Wall clock time and date at job start Mon Mar 30 2020 03:34:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86803 * 120.00191 * 2 1 4 4 H 1.48503 * 109.47142 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46750 * 299.99471 * 3 2 1 6 6 H 1.48496 * 109.47304 * 59.99463 * 3 2 1 7 7 C 1.38808 * 119.99919 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00300 * 197.36642 * 7 2 1 9 9 N 1.36936 * 119.99799 * 17.37347 * 7 2 1 10 10 C 1.46929 * 120.63137 * 207.68682 * 9 7 2 11 11 C 1.53189 * 108.77894 * 233.58774 * 10 9 7 12 12 H 1.09000 * 109.49917 * 65.34467 * 11 10 9 13 13 N 1.46899 * 109.49823 * 185.41609 * 11 10 9 14 14 C 1.53040 * 109.31179 * 305.36367 * 11 10 9 15 15 C 1.53043 * 109.53566 * 61.36403 * 14 11 10 16 16 H 1.08995 * 109.49650 * 58.59041 * 15 14 11 17 17 C 1.50701 * 109.49686 * 178.68040 * 15 14 11 18 18 C 1.38241 * 119.99487 * 59.56771 * 17 15 14 19 19 C 1.38236 * 119.99469 * 179.76578 * 18 17 15 20 20 C 1.38239 * 120.00347 * 0.48666 * 19 18 17 21 21 C 1.38240 * 119.99834 * 359.78580 * 20 19 18 22 22 C 1.38236 * 120.00194 * 239.84181 * 17 15 14 23 23 C 1.46929 * 120.63495 * 27.66612 * 9 7 2 24 24 H 0.97007 * 119.99487 * 0.02562 * 1 2 3 25 25 H 1.09000 * 109.58514 * 353.37609 * 10 9 7 26 26 H 1.09006 * 109.58458 * 113.65486 * 10 9 7 27 27 H 1.00901 * 110.99861 * 299.99710 * 13 11 10 28 28 H 1.00895 * 111.00325 * 63.95509 * 13 11 10 29 29 H 1.09003 * 109.45947 * 181.38265 * 14 11 10 30 30 H 1.09001 * 109.45960 * 301.36095 * 14 11 10 31 31 H 1.07997 * 120.00377 * 359.97438 * 18 17 15 32 32 H 1.08001 * 120.00095 * 180.24939 * 19 18 17 33 33 H 1.07998 * 120.00375 * 179.77252 * 20 19 18 34 34 H 1.07990 * 120.00064 * 179.97438 * 21 20 19 35 35 H 1.07990 * 120.00119 * 359.97438 * 22 17 15 36 36 H 1.09001 * 109.58684 * 246.20634 * 23 9 7 37 37 H 1.09006 * 109.58020 * 6.62858 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3963 -1.2126 6 1 1.8914 2.3965 1.2124 7 6 2.0102 -1.2021 0.0005 8 1 3.0532 -1.2234 0.2797 9 7 1.3723 -2.3611 -0.3531 10 6 1.8190 -3.6546 0.1817 11 6 2.0741 -4.6103 -0.9881 12 1 2.9083 -4.2408 -1.5845 13 7 2.3963 -5.9461 -0.4687 14 6 0.8185 -4.6902 -1.8594 15 6 0.5007 -3.3051 -2.4275 16 1 1.3494 -2.9477 -3.0107 17 6 -0.7169 -3.3912 -3.3112 18 6 -1.9197 -3.8300 -2.7898 19 6 -3.0378 -3.9044 -3.5992 20 6 -2.9508 -3.5495 -4.9325 21 6 -1.7467 -3.1161 -5.4552 22 6 -0.6298 -3.0368 -4.6446 23 6 0.2278 -2.3348 -1.2741 24 1 -0.4850 0.8401 -0.0004 25 1 2.7397 -3.5173 0.7487 26 1 1.0476 -4.0673 0.8319 27 1 3.2208 -5.9189 0.1123 28 1 1.6133 -6.3376 0.0329 29 1 0.9890 -5.3885 -2.6788 30 1 -0.0208 -5.0362 -1.2560 31 1 -1.9866 -4.1115 -1.7493 32 1 -3.9784 -4.2433 -3.1910 33 1 -3.8235 -3.6111 -5.5658 34 1 -1.6786 -2.8393 -6.4968 35 1 0.3107 -2.6979 -5.0528 36 1 -0.6744 -2.6410 -0.7446 37 1 0.0987 -1.3265 -1.6676 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000108005932.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:34:45 Heat of formation + Delta-G solvation = 36.477874 kcal Electronic energy + Delta-G solvation = -18057.509471 eV Core-core repulsion = 15413.411402 eV Total energy + Delta-G solvation = -2644.098069 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.30079 -37.50063 -34.01013 -33.13471 -30.88345 -30.55031 -28.79884 -27.14112 -25.30863 -23.08895 -22.21041 -21.61758 -20.32684 -19.01705 -16.81082 -16.36015 -15.46502 -15.07447 -14.84540 -14.40411 -13.97918 -13.54125 -13.51800 -13.21208 -12.95408 -12.69677 -12.35718 -12.21775 -11.78952 -11.11995 -10.95246 -10.88197 -10.80415 -10.70105 -10.25188 -10.13194 -9.95954 -9.82381 -9.61308 -8.67303 -8.55789 -8.31429 -8.22105 -6.68574 -5.82266 -3.25676 1.75071 1.75989 3.34854 3.42933 3.44930 4.16150 4.45042 4.86802 5.19203 5.21839 5.29754 5.36937 5.44389 5.55291 5.63740 5.78489 5.83494 5.91846 5.94748 6.05593 6.22288 6.32707 6.39478 6.47327 6.55569 6.62231 6.76358 6.82005 6.84502 6.88666 7.10885 7.34663 7.39367 7.50306 7.63987 7.76585 7.78321 8.40265 9.16272 9.79397 10.35733 11.25146 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.017500 B = 0.008394 C = 0.006269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1599.650064 B = 3334.933552 C = 4465.354905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.004 3.996 3 Si 0.901 3.099 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.290 1.290 7 C -0.256 4.256 8 H 0.066 0.934 9 N -0.588 5.588 10 C 0.117 3.883 11 C 0.070 3.930 12 H 0.077 0.923 13 N -0.847 5.847 14 C -0.088 4.088 15 C -0.078 4.078 16 H 0.071 0.929 17 C -0.051 4.051 18 C -0.111 4.111 19 C -0.121 4.121 20 C -0.137 4.137 21 C -0.123 4.123 22 C -0.121 4.121 23 C 0.183 3.817 24 H 0.254 0.746 25 H 0.050 0.950 26 H 0.014 0.986 27 H 0.336 0.664 28 H 0.333 0.667 29 H 0.054 0.946 30 H 0.053 0.947 31 H 0.120 0.880 32 H 0.116 0.884 33 H 0.113 0.887 34 H 0.115 0.885 35 H 0.118 0.882 36 H 0.021 0.979 37 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.393 -8.442 -6.431 10.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.195 4.195 3 Si 0.731 3.269 4 H -0.202 1.202 5 H -0.215 1.215 6 H -0.217 1.217 7 C -0.386 4.386 8 H 0.084 0.916 9 N -0.310 5.310 10 C -0.011 4.011 11 C -0.042 4.042 12 H 0.095 0.905 13 N -0.374 5.374 14 C -0.126 4.126 15 C -0.099 4.099 16 H 0.090 0.910 17 C -0.052 4.052 18 C -0.129 4.129 19 C -0.139 4.139 20 C -0.155 4.155 21 C -0.141 4.141 22 C -0.139 4.139 23 C 0.057 3.943 24 H 0.064 0.936 25 H 0.069 0.931 26 H 0.032 0.968 27 H 0.147 0.853 28 H 0.145 0.855 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.138 0.862 32 H 0.134 0.866 33 H 0.132 0.868 34 H 0.133 0.867 35 H 0.136 0.864 36 H 0.039 0.961 37 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -2.382 -8.491 -7.168 11.365 hybrid contribution 0.146 1.404 0.979 1.718 sum -2.237 -7.087 -6.189 9.671 Atomic orbital electron populations 1.70042 1.05261 1.25513 1.53460 1.25049 0.95286 0.98464 1.00685 0.86244 0.79406 0.83923 0.77341 1.20209 1.21452 1.21681 1.19212 0.92737 0.84804 1.41834 0.91642 1.43988 1.36067 1.01216 1.49712 1.21757 0.97465 0.88153 0.93767 1.22018 0.97800 0.87412 0.97009 0.90529 1.59063 1.09125 1.23948 1.45261 1.21405 0.96695 0.96110 0.98413 1.20967 0.94113 0.97127 0.97706 0.91008 1.20007 0.95480 0.95956 0.93767 1.21040 0.92412 0.99710 0.99707 1.21079 0.98227 1.00580 0.94040 1.21001 0.97507 1.01448 0.95583 1.21043 0.93195 1.00479 0.99372 1.21091 0.98522 1.00683 0.93594 1.20843 0.88477 0.98042 0.86896 0.93592 0.93115 0.96825 0.85277 0.85515 0.92736 0.92822 0.86212 0.86642 0.86844 0.86715 0.86424 0.96145 0.89275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.04 11.19 55.49 0.62 -25.42 16 2 C 0.00 0.12 4.91 -17.43 -0.09 0.03 16 3 Si 0.90 21.66 29.59 -169.99 -5.03 16.63 16 4 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 7 C -0.26 -7.00 9.59 -15.06 -0.14 -7.14 16 8 H 0.07 1.76 7.89 -52.49 -0.41 1.35 16 9 N -0.59 -14.56 3.00 -172.32 -0.52 -15.08 16 10 C 0.12 2.41 6.09 -3.71 -0.02 2.39 16 11 C 0.07 1.23 3.40 -67.59 -0.23 1.00 16 12 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 13 N -0.85 -12.27 9.26 -4.57 -0.04 -12.31 16 14 C -0.09 -1.54 4.50 -26.69 -0.12 -1.66 16 15 C -0.08 -1.51 2.51 -91.65 -0.23 -1.74 16 16 H 0.07 1.43 7.88 -51.93 -0.41 1.02 16 17 C -0.05 -0.90 4.79 -104.62 -0.50 -1.40 16 18 C -0.11 -1.84 8.67 -39.58 -0.34 -2.18 16 19 C -0.12 -1.76 10.05 -39.58 -0.40 -2.16 16 20 C -0.14 -1.88 10.05 -39.58 -0.40 -2.28 16 21 C -0.12 -1.74 10.05 -39.58 -0.40 -2.14 16 22 C -0.12 -1.94 9.67 -39.58 -0.38 -2.32 16 23 C 0.18 4.33 4.48 -3.71 -0.02 4.31 16 24 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 25 H 0.05 1.03 7.93 -51.93 -0.41 0.62 16 26 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 27 H 0.34 4.36 9.04 -39.29 -0.36 4.00 16 28 H 0.33 4.46 8.98 -39.29 -0.35 4.11 16 29 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 30 H 0.05 0.93 7.41 -51.93 -0.38 0.54 16 31 H 0.12 1.98 7.08 -52.49 -0.37 1.61 16 32 H 0.12 1.40 8.06 -52.49 -0.42 0.98 16 33 H 0.11 1.25 8.06 -52.49 -0.42 0.82 16 34 H 0.11 1.33 8.06 -52.49 -0.42 0.90 16 35 H 0.12 1.75 7.95 -52.49 -0.42 1.33 16 36 H 0.02 0.51 7.25 -51.93 -0.38 0.13 16 37 H 0.09 2.41 6.04 -51.93 -0.31 2.10 16 LS Contribution 297.45 15.07 4.48 4.48 Total: -1.00 -29.33 297.45 -9.23 -38.56 By element: Atomic # 1 Polarization: 13.90 SS G_CDS: -5.48 Total: 8.42 kcal Atomic # 6 Polarization: -12.02 SS G_CDS: -3.27 Total: -15.29 kcal Atomic # 7 Polarization: -52.87 SS G_CDS: 0.06 Total: -52.80 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.03 Total: 16.63 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -29.33 -9.23 -38.56 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108005932.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.039 kcal (2) G-P(sol) polarization free energy of solvation -29.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.561 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds