Wall clock time and date at job start Mon Mar 30 2020 03:34:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86803 * 120.00191 * 2 1 4 4 H 1.48503 * 109.47142 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46750 * 299.99471 * 3 2 1 6 6 H 1.48496 * 109.47304 * 59.99463 * 3 2 1 7 7 C 1.38808 * 119.99919 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00300 * 197.36642 * 7 2 1 9 9 N 1.36936 * 119.99799 * 17.37347 * 7 2 1 10 10 C 1.46929 * 120.63137 * 207.68682 * 9 7 2 11 11 C 1.53189 * 108.77894 * 233.58774 * 10 9 7 12 12 H 1.09000 * 109.49917 * 65.34467 * 11 10 9 13 13 N 1.46899 * 109.49823 * 185.41609 * 11 10 9 14 14 C 1.53040 * 109.31179 * 305.36367 * 11 10 9 15 15 C 1.53043 * 109.53566 * 61.36403 * 14 11 10 16 16 H 1.08995 * 109.49650 * 58.59041 * 15 14 11 17 17 C 1.50701 * 109.49686 * 178.68040 * 15 14 11 18 18 C 1.38241 * 119.99487 * 59.56771 * 17 15 14 19 19 C 1.38236 * 119.99469 * 179.76578 * 18 17 15 20 20 C 1.38239 * 120.00347 * 0.48666 * 19 18 17 21 21 C 1.38240 * 119.99834 * 359.78580 * 20 19 18 22 22 C 1.38236 * 120.00194 * 239.84181 * 17 15 14 23 23 C 1.46929 * 120.63495 * 27.66612 * 9 7 2 24 24 H 0.97007 * 119.99487 * 0.02562 * 1 2 3 25 25 H 1.09000 * 109.58514 * 353.37609 * 10 9 7 26 26 H 1.09006 * 109.58458 * 113.65486 * 10 9 7 27 27 H 1.00901 * 110.99861 * 299.99710 * 13 11 10 28 28 H 1.00895 * 111.00325 * 63.95509 * 13 11 10 29 29 H 1.09003 * 109.45947 * 181.38265 * 14 11 10 30 30 H 1.09001 * 109.45960 * 301.36095 * 14 11 10 31 31 H 1.07997 * 120.00377 * 359.97438 * 18 17 15 32 32 H 1.08001 * 120.00095 * 180.24939 * 19 18 17 33 33 H 1.07998 * 120.00375 * 179.77252 * 20 19 18 34 34 H 1.07990 * 120.00064 * 179.97438 * 21 20 19 35 35 H 1.07990 * 120.00119 * 359.97438 * 22 17 15 36 36 H 1.09001 * 109.58684 * 246.20634 * 23 9 7 37 37 H 1.09006 * 109.58020 * 6.62858 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3963 -1.2126 6 1 1.8914 2.3965 1.2124 7 6 2.0102 -1.2021 0.0005 8 1 3.0532 -1.2234 0.2797 9 7 1.3723 -2.3611 -0.3531 10 6 1.8190 -3.6546 0.1817 11 6 2.0741 -4.6103 -0.9881 12 1 2.9083 -4.2408 -1.5845 13 7 2.3963 -5.9461 -0.4687 14 6 0.8185 -4.6902 -1.8594 15 6 0.5007 -3.3051 -2.4275 16 1 1.3494 -2.9477 -3.0107 17 6 -0.7169 -3.3912 -3.3112 18 6 -1.9197 -3.8300 -2.7898 19 6 -3.0378 -3.9044 -3.5992 20 6 -2.9508 -3.5495 -4.9325 21 6 -1.7467 -3.1161 -5.4552 22 6 -0.6298 -3.0368 -4.6446 23 6 0.2278 -2.3348 -1.2741 24 1 -0.4850 0.8401 -0.0004 25 1 2.7397 -3.5173 0.7487 26 1 1.0476 -4.0673 0.8319 27 1 3.2208 -5.9189 0.1123 28 1 1.6133 -6.3376 0.0329 29 1 0.9890 -5.3885 -2.6788 30 1 -0.0208 -5.0362 -1.2560 31 1 -1.9866 -4.1115 -1.7493 32 1 -3.9784 -4.2433 -3.1910 33 1 -3.8235 -3.6111 -5.5658 34 1 -1.6786 -2.8393 -6.4968 35 1 0.3107 -2.6979 -5.0528 36 1 -0.6744 -2.6410 -0.7446 37 1 0.0987 -1.3265 -1.6676 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000108005932.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:34:45 Heat of formation + Delta-G solvation = 18.504020 kcal Electronic energy + Delta-G solvation = -18058.288876 eV Core-core repulsion = 15413.411402 eV Total energy + Delta-G solvation = -2644.877474 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.66138 -38.97282 -35.75882 -34.60037 -32.78785 -31.72226 -30.15927 -28.71214 -27.27258 -24.52768 -23.48598 -23.35080 -21.70637 -20.59778 -18.71726 -17.63928 -16.91646 -16.79128 -16.12006 -16.00172 -15.43108 -15.30634 -15.01622 -14.73454 -14.27081 -14.11208 -13.98719 -13.59462 -13.25509 -12.98830 -12.77975 -12.51801 -12.30880 -12.12684 -12.04253 -11.83175 -11.58504 -11.51377 -11.18478 -10.63366 -9.78947 -9.73790 -9.49979 -8.66545 -7.90435 -5.37870 0.55057 0.57923 1.42694 1.44789 1.55236 2.46758 2.96043 3.22787 3.42791 3.87460 3.90411 3.97232 4.15832 4.23231 4.29193 4.35885 4.38611 4.48221 4.64445 4.70955 4.74105 4.79492 4.94634 5.05637 5.14825 5.22356 5.26937 5.32514 5.47768 5.58196 5.64747 5.67959 5.72395 5.88795 6.20319 6.21532 6.35785 6.64736 7.09364 7.79838 8.31626 9.13916 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.017500 B = 0.008394 C = 0.006269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1599.650064 B = 3334.933552 C = 4465.354905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.048 4.048 3 Si 0.965 3.035 4 H -0.266 1.266 5 H -0.290 1.290 6 H -0.291 1.291 7 C -0.267 4.267 8 H 0.066 0.934 9 N -0.607 5.607 10 C 0.116 3.884 11 C 0.087 3.913 12 H 0.067 0.933 13 N -0.836 5.836 14 C -0.079 4.079 15 C -0.064 4.064 16 H 0.061 0.939 17 C -0.077 4.077 18 C -0.128 4.128 19 C -0.124 4.124 20 C -0.132 4.132 21 C -0.122 4.122 22 C -0.135 4.135 23 C 0.198 3.802 24 H 0.250 0.750 25 H 0.050 0.950 26 H 0.011 0.989 27 H 0.347 0.653 28 H 0.343 0.657 29 H 0.067 0.933 30 H 0.054 0.946 31 H 0.110 0.890 32 H 0.140 0.860 33 H 0.149 0.851 34 H 0.145 0.855 35 H 0.122 0.878 36 H -0.003 1.003 37 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.535 -9.436 -7.815 12.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.244 4.244 3 Si 0.793 3.207 4 H -0.190 1.190 5 H -0.216 1.216 6 H -0.217 1.217 7 C -0.397 4.397 8 H 0.084 0.916 9 N -0.330 5.330 10 C -0.011 4.011 11 C -0.027 4.027 12 H 0.085 0.915 13 N -0.364 5.364 14 C -0.117 4.117 15 C -0.084 4.084 16 H 0.079 0.921 17 C -0.078 4.078 18 C -0.146 4.146 19 C -0.142 4.142 20 C -0.150 4.150 21 C -0.140 4.140 22 C -0.153 4.153 23 C 0.072 3.928 24 H 0.059 0.941 25 H 0.069 0.931 26 H 0.028 0.972 27 H 0.160 0.840 28 H 0.156 0.844 29 H 0.086 0.914 30 H 0.073 0.927 31 H 0.128 0.872 32 H 0.158 0.842 33 H 0.166 0.834 34 H 0.163 0.837 35 H 0.140 0.860 36 H 0.015 0.985 37 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -2.504 -9.527 -8.547 13.041 hybrid contribution 0.144 1.657 1.413 2.182 sum -2.360 -7.870 -7.133 10.881 Atomic orbital electron populations 1.70198 1.06677 1.25824 1.54964 1.25802 0.96036 1.01536 1.01039 0.85243 0.78721 0.79862 0.76866 1.18979 1.21627 1.21749 1.19528 0.92977 0.86069 1.41124 0.91604 1.44252 1.36116 1.02073 1.50562 1.21935 0.97052 0.87110 0.95045 1.21711 0.97431 0.87983 0.95539 0.91503 1.59006 1.10042 1.21466 1.45932 1.21317 0.96568 0.95128 0.98676 1.20667 0.94792 0.96847 0.96118 0.92078 1.19942 0.95125 0.98230 0.94471 1.21094 0.93113 1.00682 0.99751 1.21405 0.98386 0.99954 0.94469 1.21448 0.98498 0.99549 0.95479 1.21418 0.92578 0.99358 1.00605 1.21274 0.99807 1.00971 0.93297 1.20525 0.87449 0.96966 0.87824 0.94093 0.93102 0.97151 0.83960 0.84418 0.91396 0.92714 0.87187 0.84197 0.83371 0.83711 0.85959 0.98484 0.93214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.89 11.19 21.65 0.24 -55.65 16 2 C -0.05 -2.74 4.91 84.86 0.42 -2.32 16 3 Si 0.97 45.36 29.59 68.60 2.03 47.39 16 4 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 5 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 6 H -0.29 -13.59 7.11 99.48 0.71 -12.89 16 7 C -0.27 -14.89 9.59 84.03 0.81 -14.08 16 8 H 0.07 3.59 7.89 -2.91 -0.02 3.56 16 9 N -0.61 -30.93 3.00 -699.09 -2.09 -33.03 16 10 C 0.12 4.82 6.09 86.36 0.53 5.35 16 11 C 0.09 2.97 3.40 44.99 0.15 3.12 16 12 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 13 N -0.84 -22.63 9.26 -168.36 -1.56 -24.19 16 14 C -0.08 -2.71 4.50 30.62 0.14 -2.58 16 15 C -0.06 -2.50 2.51 -11.46 -0.03 -2.53 16 16 H 0.06 2.49 7.88 -2.39 -0.02 2.47 16 17 C -0.08 -2.73 4.79 -19.86 -0.10 -2.82 16 18 C -0.13 -4.26 8.67 22.27 0.19 -4.07 16 19 C -0.12 -3.38 10.05 22.27 0.22 -3.16 16 20 C -0.13 -3.19 10.05 22.27 0.22 -2.97 16 21 C -0.12 -3.13 10.05 22.27 0.22 -2.91 16 22 C -0.14 -4.24 9.67 22.27 0.22 -4.02 16 23 C 0.20 9.78 4.48 86.36 0.39 10.16 16 24 H 0.25 14.51 8.31 -92.70 -0.77 13.74 16 25 H 0.05 2.07 7.93 -2.39 -0.02 2.05 16 26 H 0.01 0.45 8.14 -2.38 -0.02 0.43 16 27 H 0.35 8.29 9.04 -89.69 -0.81 7.48 16 28 H 0.34 8.48 8.98 -89.70 -0.81 7.67 16 29 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 30 H 0.05 1.87 7.41 -2.39 -0.02 1.85 16 31 H 0.11 3.75 7.08 -2.91 -0.02 3.73 16 32 H 0.14 3.03 8.06 -2.91 -0.02 3.01 16 33 H 0.15 2.56 8.06 -2.91 -0.02 2.53 16 34 H 0.15 2.81 8.06 -2.92 -0.02 2.78 16 35 H 0.12 3.58 7.95 -2.92 -0.02 3.56 16 36 H 0.00 -0.15 7.25 -2.39 -0.02 -0.17 16 37 H 0.05 2.83 6.04 -2.38 -0.01 2.82 16 Total: -1.00 -64.48 297.45 1.45 -63.03 By element: Atomic # 1 Polarization: 25.80 SS G_CDS: -0.55 Total: 25.25 kcal Atomic # 6 Polarization: -26.19 SS G_CDS: 3.38 Total: -22.81 kcal Atomic # 7 Polarization: -109.45 SS G_CDS: -3.41 Total: -112.86 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 2.03 Total: 47.39 kcal Total: -64.48 1.45 -63.03 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108005932.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.531 kcal (2) G-P(sol) polarization free energy of solvation -64.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.027 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds