Wall clock time and date at job start Mon Mar 30 2020 03:34:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86800 * 119.99936 * 2 1 4 4 H 1.48502 * 109.47046 * 239.99901 * 3 2 1 5 5 H 1.48503 * 109.46997 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.46913 * 120.00009 * 3 2 1 7 7 C 1.38807 * 119.99543 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99722 * 197.36191 * 7 2 1 9 9 N 1.36934 * 120.00790 * 17.36280 * 7 2 1 10 10 C 1.46931 * 120.62700 * 27.68118 * 9 7 2 11 11 C 1.53200 * 108.77157 * 126.37442 * 10 9 7 12 12 H 1.09005 * 109.49334 * 294.68569 * 11 10 9 13 13 N 1.46899 * 109.49585 * 174.61839 * 11 10 9 14 14 C 1.53036 * 109.33897 * 54.65099 * 11 10 9 15 15 C 1.53103 * 109.50448 * 298.65296 * 14 11 10 16 16 H 1.08999 * 109.51824 * 301.36534 * 15 14 11 17 17 C 1.50703 * 109.49138 * 181.29945 * 15 14 11 18 18 C 1.38241 * 120.00003 * 299.87611 * 17 15 14 19 19 C 1.38230 * 119.99823 * 179.74253 * 18 17 15 20 20 C 1.38234 * 120.00328 * 0.54280 * 19 18 17 21 21 C 1.38240 * 119.99798 * 359.71142 * 20 19 18 22 22 C 1.38232 * 120.00216 * 120.13954 * 17 15 14 23 23 C 1.46921 * 120.63402 * 207.66536 * 9 7 2 24 24 H 0.96994 * 119.99917 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.58618 * 6.59087 * 10 9 7 26 26 H 1.08997 * 109.58661 * 246.15713 * 10 9 7 27 27 H 1.00901 * 110.99778 * 60.06282 * 13 11 10 28 28 H 1.00893 * 110.99902 * 184.01698 * 13 11 10 29 29 H 1.09006 * 109.45949 * 58.63714 * 14 11 10 30 30 H 1.08998 * 109.46422 * 178.59743 * 14 11 10 31 31 H 1.07996 * 119.99321 * 359.97438 * 18 17 15 32 32 H 1.07998 * 120.00057 * 180.26902 * 19 18 17 33 33 H 1.07998 * 120.00283 * 179.72473 * 20 19 18 34 34 H 1.08002 * 119.99830 * 180.02562 * 21 20 19 35 35 H 1.07999 * 119.99931 * 0.02562 * 22 17 15 36 36 H 1.08997 * 109.58770 * 353.41644 * 23 9 7 37 37 H 1.09006 * 109.58845 * 113.69341 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2852 2.7465 -0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0534 -1.2236 0.2786 9 7 1.3724 -2.3609 -0.3549 10 6 0.2280 -2.3339 -1.2760 11 6 0.5015 -3.3028 -2.4307 12 1 1.3502 -2.9442 -3.0132 13 7 -0.6851 -3.3856 -3.2928 14 6 0.8194 -4.6887 -1.8648 15 6 2.0752 -4.6089 -0.9926 16 1 2.9094 -4.2385 -1.5883 17 6 2.4063 -5.9798 -0.4613 18 6 1.4948 -6.6529 0.3306 19 6 1.7964 -7.9125 0.8135 20 6 3.0140 -8.4944 0.5140 21 6 3.9276 -7.8191 -0.2736 22 6 3.6237 -6.5619 -0.7612 23 6 1.8196 -3.6548 0.1784 24 1 -0.4850 0.8400 0.0004 25 1 0.0985 -1.3252 -1.6684 26 1 -0.6741 -2.6412 -0.7471 27 1 -0.9159 -2.4820 -3.6779 28 1 -0.5534 -4.0677 -4.0245 29 1 -0.0197 -5.0361 -1.2620 30 1 0.9900 -5.3857 -2.6853 31 1 0.5456 -6.1962 0.5688 32 1 1.0825 -8.4402 1.4286 33 1 3.2514 -9.4767 0.8949 34 1 4.8787 -8.2739 -0.5080 35 1 4.3377 -6.0341 -1.3760 36 1 2.7401 -3.5178 0.7457 37 1 1.0482 -4.0686 0.8280 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000108005939.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:34:50 Heat of formation + Delta-G solvation = 38.308256 kcal Electronic energy + Delta-G solvation = -17921.365614 eV Core-core repulsion = 15277.346916 eV Total energy + Delta-G solvation = -2644.018698 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.41796 -37.43090 -33.78044 -33.34600 -30.86188 -30.68373 -28.73039 -27.33426 -25.28322 -23.15533 -22.34268 -21.57064 -20.29644 -18.80289 -16.89943 -16.42612 -15.18229 -14.99878 -14.80721 -14.60746 -14.21942 -13.87636 -13.45300 -13.18855 -13.05343 -12.54759 -12.35527 -12.18683 -11.86550 -11.14237 -11.01214 -10.96325 -10.69167 -10.64514 -10.45774 -10.17745 -9.91219 -9.81628 -9.43124 -8.72211 -8.56796 -8.34540 -8.12145 -6.67059 -5.78658 -3.21769 1.58701 1.60232 3.37923 3.43731 3.44841 4.00330 4.47037 4.86083 5.06813 5.12081 5.20608 5.31391 5.40042 5.57210 5.67629 5.71382 5.74196 5.83833 5.89176 6.07268 6.23167 6.29235 6.33177 6.35878 6.59736 6.66443 6.68209 6.73614 6.80847 6.93249 7.09607 7.22672 7.34445 7.56442 7.79326 7.83560 7.96437 8.44670 9.20912 9.83890 10.40554 11.29198 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.027056 B = 0.006311 C = 0.005597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1034.653005 B = 4435.777985 C = 5001.692622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.004 3.996 3 Si 0.902 3.098 4 H -0.284 1.284 5 H -0.290 1.290 6 H -0.282 1.282 7 C -0.257 4.257 8 H 0.066 0.934 9 N -0.590 5.590 10 C 0.180 3.820 11 C 0.063 3.937 12 H 0.026 0.974 13 N -0.845 5.845 14 C -0.089 4.089 15 C -0.069 4.069 16 H 0.072 0.928 17 C -0.058 4.058 18 C -0.112 4.112 19 C -0.121 4.121 20 C -0.135 4.135 21 C -0.123 4.123 22 C -0.121 4.121 23 C 0.157 3.843 24 H 0.255 0.745 25 H 0.085 0.915 26 H 0.027 0.973 27 H 0.339 0.661 28 H 0.327 0.673 29 H 0.064 0.936 30 H 0.043 0.957 31 H 0.123 0.877 32 H 0.117 0.883 33 H 0.115 0.885 34 H 0.116 0.884 35 H 0.118 0.882 36 H 0.053 0.947 37 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.686 -13.000 -3.225 13.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.195 4.195 3 Si 0.732 3.268 4 H -0.211 1.211 5 H -0.216 1.216 6 H -0.208 1.208 7 C -0.386 4.386 8 H 0.083 0.917 9 N -0.312 5.312 10 C 0.054 3.946 11 C -0.049 4.049 12 H 0.044 0.956 13 N -0.374 5.374 14 C -0.127 4.127 15 C -0.090 4.090 16 H 0.091 0.909 17 C -0.058 4.058 18 C -0.130 4.130 19 C -0.139 4.139 20 C -0.154 4.154 21 C -0.141 4.141 22 C -0.139 4.139 23 C 0.030 3.970 24 H 0.065 0.935 25 H 0.103 0.897 26 H 0.046 0.954 27 H 0.151 0.849 28 H 0.138 0.862 29 H 0.083 0.917 30 H 0.061 0.939 31 H 0.141 0.859 32 H 0.135 0.865 33 H 0.133 0.867 34 H 0.134 0.866 35 H 0.136 0.864 36 H 0.072 0.928 37 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges 3.184 -13.038 -2.530 13.658 hybrid contribution 1.115 1.117 -0.792 1.766 sum 4.299 -11.921 -3.322 13.101 Atomic orbital electron populations 1.70045 1.05201 1.25635 1.53419 1.25040 0.95272 0.98384 1.00792 0.86382 0.78942 0.83383 0.78141 1.21094 1.21582 1.20817 1.19142 0.92754 0.84835 1.41877 0.91673 1.43994 1.35938 1.01299 1.49920 1.20722 0.88859 0.97568 0.87458 1.22145 0.89916 0.96876 0.95978 0.95626 1.58684 1.40207 1.12639 1.25870 1.21434 0.96850 0.96307 0.98100 1.20796 0.98217 0.91179 0.98783 0.90908 1.20047 0.93654 0.95982 0.96151 1.21103 0.99800 0.94588 0.97510 1.21113 0.96923 0.95657 1.00178 1.21039 0.94572 0.99887 0.99863 1.21066 0.99211 0.95272 0.98535 1.21096 0.96700 0.95455 1.00654 1.20926 0.97769 0.86332 0.91929 0.93541 0.89724 0.95445 0.84888 0.86195 0.91721 0.93869 0.85904 0.86476 0.86719 0.86619 0.86396 0.92801 0.96008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.14 11.19 55.49 0.62 -25.52 16 2 C 0.00 0.11 4.91 -17.43 -0.09 0.03 16 3 Si 0.90 21.67 29.59 -169.99 -5.03 16.64 16 4 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 7 C -0.26 -7.07 9.58 -15.06 -0.14 -7.21 16 8 H 0.07 1.76 7.89 -52.48 -0.41 1.35 16 9 N -0.59 -14.86 2.99 -172.32 -0.52 -15.38 16 10 C 0.18 4.35 4.89 -3.70 -0.02 4.34 16 11 C 0.06 1.23 3.39 -67.59 -0.23 1.00 16 12 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 13 N -0.84 -14.13 9.25 -4.56 -0.04 -14.17 16 14 C -0.09 -1.57 4.51 -26.66 -0.12 -1.69 16 15 C -0.07 -1.23 2.51 -91.62 -0.23 -1.46 16 16 H 0.07 1.34 7.88 -51.93 -0.41 0.93 16 17 C -0.06 -0.91 4.79 -104.62 -0.50 -1.41 16 18 C -0.11 -1.67 8.67 -39.58 -0.34 -2.01 16 19 C -0.12 -1.56 10.05 -39.59 -0.40 -1.96 16 20 C -0.14 -1.63 10.05 -39.58 -0.40 -2.03 16 21 C -0.12 -1.53 10.05 -39.58 -0.40 -1.92 16 22 C -0.12 -1.71 9.67 -39.58 -0.38 -2.09 16 23 C 0.16 3.36 5.68 -3.71 -0.02 3.34 16 24 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 25 H 0.08 2.28 6.03 -51.93 -0.31 1.96 16 26 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.34 5.43 9.04 -39.29 -0.36 5.08 16 28 H 0.33 4.60 8.99 -39.30 -0.35 4.25 16 29 H 0.06 1.19 7.45 -51.93 -0.39 0.80 16 30 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.12 1.85 7.09 -52.49 -0.37 1.48 16 32 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 33 H 0.11 1.09 8.06 -52.49 -0.42 0.67 16 34 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 35 H 0.12 1.53 7.95 -52.49 -0.42 1.11 16 36 H 0.05 1.16 7.93 -51.93 -0.41 0.74 16 37 H 0.02 0.48 7.23 -51.93 -0.38 0.10 16 LS Contribution 297.48 15.07 4.48 4.48 Total: -1.00 -29.52 297.48 -9.23 -38.76 By element: Atomic # 1 Polarization: 13.75 SS G_CDS: -5.48 Total: 8.27 kcal Atomic # 6 Polarization: -9.81 SS G_CDS: -3.27 Total: -13.08 kcal Atomic # 7 Polarization: -55.13 SS G_CDS: 0.06 Total: -55.07 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.03 Total: 16.64 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -29.52 -9.23 -38.76 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108005939.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.066 kcal (2) G-P(sol) polarization free energy of solvation -29.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.757 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds