Wall clock time and date at job start Mon Mar 30 2020 03:34:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86800 * 119.99936 * 2 1 4 4 H 1.48502 * 109.47046 * 239.99901 * 3 2 1 5 5 H 1.48503 * 109.46997 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.46913 * 120.00009 * 3 2 1 7 7 C 1.38807 * 119.99543 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99722 * 197.36191 * 7 2 1 9 9 N 1.36934 * 120.00790 * 17.36280 * 7 2 1 10 10 C 1.46931 * 120.62700 * 27.68118 * 9 7 2 11 11 C 1.53200 * 108.77157 * 126.37442 * 10 9 7 12 12 H 1.09005 * 109.49334 * 294.68569 * 11 10 9 13 13 N 1.46899 * 109.49585 * 174.61839 * 11 10 9 14 14 C 1.53036 * 109.33897 * 54.65099 * 11 10 9 15 15 C 1.53103 * 109.50448 * 298.65296 * 14 11 10 16 16 H 1.08999 * 109.51824 * 301.36534 * 15 14 11 17 17 C 1.50703 * 109.49138 * 181.29945 * 15 14 11 18 18 C 1.38241 * 120.00003 * 299.87611 * 17 15 14 19 19 C 1.38230 * 119.99823 * 179.74253 * 18 17 15 20 20 C 1.38234 * 120.00328 * 0.54280 * 19 18 17 21 21 C 1.38240 * 119.99798 * 359.71142 * 20 19 18 22 22 C 1.38232 * 120.00216 * 120.13954 * 17 15 14 23 23 C 1.46921 * 120.63402 * 207.66536 * 9 7 2 24 24 H 0.96994 * 119.99917 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.58618 * 6.59087 * 10 9 7 26 26 H 1.08997 * 109.58661 * 246.15713 * 10 9 7 27 27 H 1.00901 * 110.99778 * 60.06282 * 13 11 10 28 28 H 1.00893 * 110.99902 * 184.01698 * 13 11 10 29 29 H 1.09006 * 109.45949 * 58.63714 * 14 11 10 30 30 H 1.08998 * 109.46422 * 178.59743 * 14 11 10 31 31 H 1.07996 * 119.99321 * 359.97438 * 18 17 15 32 32 H 1.07998 * 120.00057 * 180.26902 * 19 18 17 33 33 H 1.07998 * 120.00283 * 179.72473 * 20 19 18 34 34 H 1.08002 * 119.99830 * 180.02562 * 21 20 19 35 35 H 1.07999 * 119.99931 * 0.02562 * 22 17 15 36 36 H 1.08997 * 109.58770 * 353.41644 * 23 9 7 37 37 H 1.09006 * 109.58845 * 113.69341 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2852 2.7465 -0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0534 -1.2236 0.2786 9 7 1.3724 -2.3609 -0.3549 10 6 0.2280 -2.3339 -1.2760 11 6 0.5015 -3.3028 -2.4307 12 1 1.3502 -2.9442 -3.0132 13 7 -0.6851 -3.3856 -3.2928 14 6 0.8194 -4.6887 -1.8648 15 6 2.0752 -4.6089 -0.9926 16 1 2.9094 -4.2385 -1.5883 17 6 2.4063 -5.9798 -0.4613 18 6 1.4948 -6.6529 0.3306 19 6 1.7964 -7.9125 0.8135 20 6 3.0140 -8.4944 0.5140 21 6 3.9276 -7.8191 -0.2736 22 6 3.6237 -6.5619 -0.7612 23 6 1.8196 -3.6548 0.1784 24 1 -0.4850 0.8400 0.0004 25 1 0.0985 -1.3252 -1.6684 26 1 -0.6741 -2.6412 -0.7471 27 1 -0.9159 -2.4820 -3.6779 28 1 -0.5534 -4.0677 -4.0245 29 1 -0.0197 -5.0361 -1.2620 30 1 0.9900 -5.3857 -2.6853 31 1 0.5456 -6.1962 0.5688 32 1 1.0825 -8.4402 1.4286 33 1 3.2514 -9.4767 0.8949 34 1 4.8787 -8.2739 -0.5080 35 1 4.3377 -6.0341 -1.3760 36 1 2.7401 -3.5178 0.7457 37 1 1.0482 -4.0686 0.8280 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000108005939.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:34:50 Heat of formation + Delta-G solvation = 20.095354 kcal Electronic energy + Delta-G solvation = -17922.155384 eV Core-core repulsion = 15277.346916 eV Total energy + Delta-G solvation = -2644.808469 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.66464 -38.92788 -35.61273 -34.79211 -32.70431 -31.72079 -30.09963 -28.97026 -27.26284 -24.55043 -23.51811 -23.26406 -21.66007 -20.41683 -18.75908 -17.62854 -16.90945 -16.39799 -16.15520 -16.07502 -15.86289 -15.40985 -14.89638 -14.74823 -14.20722 -14.09510 -13.91473 -13.58505 -13.33433 -12.99893 -12.71158 -12.43856 -12.32812 -12.14394 -12.09234 -11.93936 -11.56109 -11.47223 -11.16278 -10.58141 -9.74548 -9.57443 -9.54139 -8.70758 -7.89411 -5.36551 0.53141 0.57668 1.45491 1.47614 1.54920 2.48566 2.95332 3.21217 3.39841 3.86005 3.89640 3.99673 4.17219 4.23681 4.31259 4.34778 4.39070 4.48876 4.62278 4.72794 4.76864 4.77860 4.98326 5.12340 5.19036 5.22239 5.24516 5.29670 5.45236 5.59612 5.66078 5.68917 5.70021 5.86953 6.20279 6.25615 6.36987 6.69915 7.11425 7.81262 8.33904 9.16195 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.027056 B = 0.006311 C = 0.005597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1034.653005 B = 4435.777985 C = 5001.692622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.047 4.047 3 Si 0.969 3.031 4 H -0.277 1.277 5 H -0.292 1.292 6 H -0.275 1.275 7 C -0.271 4.271 8 H 0.066 0.934 9 N -0.608 5.608 10 C 0.192 3.808 11 C 0.077 3.923 12 H 0.020 0.980 13 N -0.843 5.843 14 C -0.080 4.080 15 C -0.053 4.053 16 H 0.068 0.932 17 C -0.078 4.078 18 C -0.128 4.128 19 C -0.124 4.124 20 C -0.130 4.130 21 C -0.121 4.121 22 C -0.129 4.129 23 C 0.157 3.843 24 H 0.251 0.749 25 H 0.053 0.947 26 H -0.005 1.005 27 H 0.343 0.657 28 H 0.347 0.653 29 H 0.055 0.945 30 H 0.068 0.932 31 H 0.110 0.890 32 H 0.139 0.861 33 H 0.147 0.853 34 H 0.145 0.855 35 H 0.126 0.874 36 H 0.047 0.953 37 H 0.013 0.987 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.208 -15.013 -3.756 16.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.243 4.243 3 Si 0.796 3.204 4 H -0.203 1.203 5 H -0.218 1.218 6 H -0.200 1.200 7 C -0.401 4.401 8 H 0.084 0.916 9 N -0.330 5.330 10 C 0.065 3.935 11 C -0.036 4.036 12 H 0.038 0.962 13 N -0.375 5.375 14 C -0.118 4.118 15 C -0.074 4.074 16 H 0.087 0.913 17 C -0.078 4.078 18 C -0.146 4.146 19 C -0.142 4.142 20 C -0.148 4.148 21 C -0.139 4.139 22 C -0.147 4.147 23 C 0.032 3.968 24 H 0.060 0.940 25 H 0.071 0.929 26 H 0.013 0.987 27 H 0.156 0.844 28 H 0.161 0.839 29 H 0.074 0.926 30 H 0.086 0.914 31 H 0.128 0.872 32 H 0.156 0.844 33 H 0.165 0.835 34 H 0.163 0.837 35 H 0.144 0.856 36 H 0.065 0.935 37 H 0.030 0.970 Dipole moment (debyes) X Y Z Total from point charges 4.719 -15.089 -3.075 16.106 hybrid contribution 0.637 1.643 -0.568 1.851 sum 5.356 -13.446 -3.643 14.925 Atomic orbital electron populations 1.70209 1.06683 1.26036 1.54775 1.25818 0.96034 1.01536 1.00897 0.85332 0.77605 0.79063 0.78397 1.20337 1.21805 1.20049 1.19480 0.93036 0.86051 1.41506 0.91605 1.44241 1.35991 1.02112 1.50704 1.20453 0.87537 0.96992 0.88478 1.21808 0.90536 0.96668 0.94567 0.96180 1.58577 1.38695 1.13591 1.26600 1.21351 0.96462 0.95364 0.98601 1.20505 0.98026 0.91846 0.97009 0.91324 1.19853 0.95058 0.95057 0.97869 1.21122 0.99435 0.95780 0.98311 1.21395 0.97981 0.94837 0.99963 1.21462 0.93689 1.00967 0.98656 1.21428 1.00432 0.94425 0.97619 1.21264 0.96065 0.96428 1.00984 1.21001 0.96837 0.85583 0.93394 0.93990 0.92881 0.98688 0.84408 0.83896 0.92628 0.91355 0.87175 0.84352 0.83534 0.83711 0.85587 0.93465 0.96956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.09 11.19 21.65 0.24 -55.84 16 2 C -0.05 -2.67 4.91 84.86 0.42 -2.25 16 3 Si 0.97 45.28 29.59 68.60 2.03 47.31 16 4 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 5 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 6 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 7 C -0.27 -15.30 9.58 84.03 0.81 -14.50 16 8 H 0.07 3.63 7.89 -2.91 -0.02 3.60 16 9 N -0.61 -31.70 2.99 -699.08 -2.09 -33.79 16 10 C 0.19 9.65 4.89 86.36 0.42 10.07 16 11 C 0.08 3.01 3.39 44.99 0.15 3.17 16 12 H 0.02 0.82 8.14 -2.38 -0.02 0.80 16 13 N -0.84 -27.72 9.25 -168.35 -1.56 -29.27 16 14 C -0.08 -2.78 4.51 30.64 0.14 -2.64 16 15 C -0.05 -1.90 2.51 -11.44 -0.03 -1.93 16 16 H 0.07 2.49 7.88 -2.39 -0.02 2.47 16 17 C -0.08 -2.36 4.79 -19.86 -0.10 -2.46 16 18 C -0.13 -3.72 8.67 22.27 0.19 -3.52 16 19 C -0.12 -2.89 10.05 22.27 0.22 -2.67 16 20 C -0.13 -2.63 10.05 22.27 0.22 -2.41 16 21 C -0.12 -2.57 10.05 22.27 0.22 -2.35 16 22 C -0.13 -3.37 9.67 22.27 0.22 -3.15 16 23 C 0.16 6.93 5.68 86.36 0.49 7.42 16 24 H 0.25 14.61 8.31 -92.71 -0.77 13.84 16 25 H 0.05 2.98 6.03 -2.39 -0.01 2.97 16 26 H 0.00 -0.28 8.14 -2.39 -0.02 -0.30 16 27 H 0.34 10.94 9.04 -89.69 -0.81 10.13 16 28 H 0.35 9.15 8.99 -89.70 -0.81 8.34 16 29 H 0.05 2.05 7.45 -2.38 -0.02 2.03 16 30 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 31 H 0.11 3.38 7.09 -2.91 -0.02 3.36 16 32 H 0.14 2.56 8.06 -2.91 -0.02 2.54 16 33 H 0.15 2.05 8.06 -2.91 -0.02 2.02 16 34 H 0.15 2.22 8.06 -2.91 -0.02 2.19 16 35 H 0.13 2.99 7.95 -2.91 -0.02 2.97 16 36 H 0.05 2.09 7.93 -2.39 -0.02 2.07 16 37 H 0.01 0.57 7.23 -2.38 -0.02 0.55 16 Total: -1.00 -65.15 297.48 1.45 -63.70 By element: Atomic # 1 Polarization: 25.67 SS G_CDS: -0.55 Total: 25.12 kcal Atomic # 6 Polarization: -20.60 SS G_CDS: 3.38 Total: -17.22 kcal Atomic # 7 Polarization: -115.50 SS G_CDS: -3.41 Total: -118.91 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 2.03 Total: 47.31 kcal Total: -65.15 1.45 -63.70 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108005939.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.796 kcal (2) G-P(sol) polarization free energy of solvation -65.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.700 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds