Wall clock time and date at job start Mon Mar 30 2020 04:06:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08998 * 109.46562 * 2 1 4 4 C 1.50693 * 109.47010 * 120.00333 * 2 1 3 5 5 H 1.08002 * 119.99868 * 120.00082 * 4 2 1 6 6 C 1.37874 * 120.00359 * 299.99769 * 4 2 1 7 7 N 1.31512 * 120.00054 * 179.97438 * 6 4 2 8 8 Si 1.86802 * 119.99745 * 0.02562 * 6 4 2 9 9 H 1.48493 * 109.47442 * 89.99686 * 8 6 4 10 10 H 1.48501 * 109.46660 * 209.99872 * 8 6 4 11 11 H 1.48496 * 109.47079 * 329.99267 * 8 6 4 12 12 N 1.46900 * 109.46779 * 240.00710 * 2 1 3 13 13 C 1.47162 * 110.99769 * 182.96884 * 12 2 1 14 14 C 1.53220 * 108.23071 * 165.08789 * 13 12 2 15 15 C 1.50727 * 109.85808 * 50.87329 * 14 13 12 16 16 C 1.38751 * 118.46726 * 162.52361 * 15 14 13 17 17 C 1.38076 * 120.50551 * 179.49922 * 16 15 14 18 18 C 1.38128 * 119.91941 * 0.03125 * 17 16 15 19 19 C 1.38703 * 119.77925 * 0.09025 * 18 17 16 20 20 N 1.39675 * 119.88733 * 179.97438 * 19 18 17 21 21 C 1.37707 * 121.64542 * 342.51980 * 15 14 13 22 22 C 1.46626 * 111.00415 * 59.99973 * 12 2 1 23 23 H 1.08996 * 109.47065 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.46862 * 299.99364 * 1 2 3 25 25 H 1.09004 * 109.47311 * 59.99621 * 1 2 3 26 26 H 0.97000 * 119.99859 * 180.02562 * 7 6 4 27 27 H 1.08992 * 109.63307 * 285.13103 * 13 12 2 28 28 H 1.09008 * 109.62715 * 45.51077 * 13 12 2 29 29 H 1.08998 * 109.99961 * 290.41023 * 14 13 12 30 30 H 1.09003 * 108.89572 * 170.64467 * 14 13 12 31 31 H 1.08000 * 119.74170 * 359.48663 * 16 15 14 32 32 H 1.08000 * 120.04166 * 180.02562 * 17 16 15 33 33 H 1.07999 * 120.11007 * 180.02562 * 18 17 16 34 34 H 0.96999 * 120.00193 * 0.02562 * 20 19 18 35 35 H 0.97005 * 119.99698 * 179.97438 * 20 19 18 36 36 H 1.09001 * 109.30288 * 55.68535 * 22 12 2 37 37 H 1.09004 * 109.13875 * 296.20161 * 22 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6533 -1.5886 1.1312 6 6 1.6993 -0.2395 2.4827 7 7 2.1373 -0.8599 3.5564 8 14 0.6249 1.2789 2.6542 9 1 -0.8027 0.8726 2.6998 10 1 0.9761 1.9948 3.9069 11 1 0.8472 2.1764 1.4922 12 7 2.0196 -0.6924 -1.1995 13 6 3.4890 -0.7739 -1.1985 14 6 3.9124 -1.8077 -2.2472 15 6 3.2394 -1.5082 -3.5622 16 6 3.7557 -2.0820 -4.7152 17 6 3.1661 -1.8445 -5.9409 18 6 2.0539 -1.0295 -6.0241 19 6 1.5357 -0.4518 -4.8745 20 7 0.4115 0.3731 -4.9561 21 6 2.1366 -0.6870 -3.6389 22 6 1.5495 -0.0274 -2.4189 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5137 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 1.9027 -0.5287 4.4374 27 1 3.9101 0.2010 -1.4437 28 1 3.8377 -1.0861 -0.2141 29 1 3.6336 -2.8086 -1.9178 30 1 4.9938 -1.7584 -2.3749 31 1 4.6256 -2.7190 -4.6534 32 1 3.5740 -2.2952 -6.8336 33 1 1.5900 -0.8420 -6.9812 34 1 -0.0057 0.5408 -5.8155 35 1 0.0475 0.7777 -4.1530 36 1 1.8493 1.0203 -2.3964 37 1 0.4622 -0.0900 -2.4635 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000125667032.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:06:58 Heat of formation + Delta-G solvation = 35.590913 kcal Electronic energy + Delta-G solvation = -18071.743736 eV Core-core repulsion = 15427.607205 eV Total energy + Delta-G solvation = -2644.136531 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.89014 -37.15011 -34.83765 -33.38105 -31.71503 -30.21264 -29.42866 -27.63248 -25.49835 -24.01466 -22.73150 -21.23284 -20.28598 -18.91452 -17.02261 -16.81838 -16.38458 -15.45003 -14.93026 -14.42972 -14.31499 -13.90547 -13.52598 -13.41672 -13.07172 -12.64034 -12.46929 -12.19283 -11.96053 -11.63566 -11.36590 -11.27664 -10.83757 -10.60393 -10.37821 -10.27941 -10.15079 -9.86739 -9.49688 -9.01405 -8.57977 -8.24853 -7.46138 -7.22843 -6.08666 -4.07264 1.68523 1.85515 3.24762 3.34271 3.36789 3.98413 4.08739 4.37753 4.73400 5.06516 5.10726 5.22858 5.33686 5.56189 5.63498 5.73543 5.85436 5.95094 5.99404 6.09521 6.17446 6.26828 6.31678 6.42410 6.49042 6.53728 6.64129 6.73356 6.78562 6.90451 7.03708 7.11471 7.26954 7.57572 7.64022 7.84599 7.96460 8.05737 8.63910 8.97560 9.53175 11.03946 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.035905 B = 0.006520 C = 0.005668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 779.644938 B = 4293.760479 C = 4938.895197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.180 3.820 3 H -0.002 1.002 4 C -0.506 4.506 5 H 0.085 0.915 6 C 0.071 3.929 7 N -0.898 5.898 8 Si 0.886 3.114 9 H -0.278 1.278 10 H -0.297 1.297 11 H -0.270 1.270 12 N -0.514 5.514 13 C 0.056 3.944 14 C -0.078 4.078 15 C -0.016 4.016 16 C -0.183 4.183 17 C -0.079 4.079 18 C -0.211 4.211 19 C 0.216 3.784 20 N -0.880 5.880 21 C -0.144 4.144 22 C 0.096 3.904 23 H 0.061 0.939 24 H 0.042 0.958 25 H 0.026 0.974 26 H 0.264 0.736 27 H 0.023 0.977 28 H 0.101 0.899 29 H 0.084 0.916 30 H 0.070 0.930 31 H 0.114 0.886 32 H 0.115 0.885 33 H 0.113 0.887 34 H 0.394 0.606 35 H 0.398 0.602 36 H 0.030 0.970 37 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.330 1.603 -16.753 16.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.073 3.927 3 H 0.015 0.985 4 C -0.544 4.544 5 H 0.103 0.897 6 C -0.131 4.131 7 N -0.536 5.536 8 Si 0.717 3.283 9 H -0.205 1.205 10 H -0.225 1.225 11 H -0.195 1.195 12 N -0.238 5.238 13 C -0.072 4.072 14 C -0.116 4.116 15 C -0.017 4.017 16 C -0.203 4.203 17 C -0.098 4.098 18 C -0.234 4.234 19 C 0.112 3.888 20 N -0.420 5.420 21 C -0.148 4.148 22 C -0.032 4.032 23 H 0.081 0.919 24 H 0.060 0.940 25 H 0.045 0.955 26 H 0.074 0.926 27 H 0.042 0.958 28 H 0.119 0.881 29 H 0.103 0.897 30 H 0.089 0.911 31 H 0.133 0.867 32 H 0.133 0.867 33 H 0.131 0.869 34 H 0.221 0.779 35 H 0.227 0.773 36 H 0.048 0.952 37 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -0.489 1.100 -16.514 16.558 hybrid contribution -0.759 1.854 0.081 2.005 sum -1.248 2.953 -16.433 16.743 Atomic orbital electron populations 1.22193 0.98569 1.01395 0.98116 1.19716 0.91475 0.92636 0.88885 0.98478 1.20957 1.31999 1.13618 0.87811 0.89744 1.24913 0.95799 0.96576 0.95811 1.69876 1.45655 1.40209 0.97878 0.86886 0.80805 0.83839 0.76809 1.20547 1.22478 1.19513 1.62247 1.09168 1.51597 1.00820 1.22184 0.88477 0.96314 1.00253 1.20695 0.98445 1.00874 0.91547 1.19504 0.93375 0.93598 0.95176 1.20844 1.02547 1.04651 0.92213 1.20695 0.94971 0.96887 0.97214 1.20362 1.01203 1.05557 0.96313 1.17678 0.87294 0.90624 0.93206 1.42524 1.32172 1.55492 1.11838 1.19193 0.98749 1.03953 0.92926 1.20762 0.99171 0.94524 0.88752 0.91948 0.93992 0.95490 0.92598 0.95827 0.88051 0.89722 0.91139 0.86746 0.86714 0.86866 0.77863 0.77317 0.95226 0.90724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.18 8.43 37.16 0.31 -2.87 16 2 C 0.18 4.27 1.63 -68.86 -0.11 4.16 16 3 H 0.00 -0.06 7.20 -51.93 -0.37 -0.43 16 4 C -0.51 -13.94 8.31 -34.44 -0.29 -14.23 16 5 H 0.08 2.51 6.83 -52.49 -0.36 2.16 16 6 C 0.07 2.01 5.45 -17.82 -0.10 1.92 16 7 N -0.90 -27.06 13.96 55.43 0.77 -26.28 16 8 Si 0.89 21.77 24.37 -169.99 -4.14 17.63 16 9 H -0.28 -6.68 6.87 56.52 0.39 -6.29 16 10 H -0.30 -7.32 7.11 56.52 0.40 -6.92 16 11 H -0.27 -6.40 6.53 56.52 0.37 -6.03 16 12 N -0.51 -10.83 4.53 -229.40 -1.04 -11.86 16 13 C 0.06 1.09 5.39 -3.57 -0.02 1.08 16 14 C -0.08 -1.29 5.96 -27.76 -0.17 -1.46 16 15 C -0.02 -0.25 5.77 -104.61 -0.60 -0.86 16 16 C -0.18 -2.58 9.65 -39.45 -0.38 -2.96 16 17 C -0.08 -1.01 10.04 -39.68 -0.40 -1.41 16 18 C -0.21 -2.75 9.89 -39.45 -0.39 -3.14 16 19 C 0.22 3.10 6.73 -83.68 -0.56 2.54 16 20 N -0.88 -9.98 8.97 32.47 0.29 -9.69 16 21 C -0.14 -2.40 5.81 -104.43 -0.61 -3.00 16 22 C 0.10 1.73 3.96 -5.17 -0.02 1.71 16 23 H 0.06 1.38 8.14 -51.93 -0.42 0.96 16 24 H 0.04 0.95 3.27 -51.93 -0.17 0.78 16 25 H 0.03 0.50 6.49 -51.93 -0.34 0.16 16 26 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 27 H 0.02 0.46 8.05 -51.93 -0.42 0.04 16 28 H 0.10 2.20 5.94 -51.92 -0.31 1.89 16 29 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 30 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.11 1.40 8.06 -52.49 -0.42 0.97 16 32 H 0.11 1.16 8.06 -52.49 -0.42 0.73 16 33 H 0.11 1.20 8.06 -52.49 -0.42 0.77 16 34 H 0.39 3.39 8.84 -40.82 -0.36 3.03 16 35 H 0.40 4.43 6.93 -40.82 -0.28 4.15 16 36 H 0.03 0.54 8.13 -51.93 -0.42 0.12 16 37 H 0.07 1.28 5.40 -51.93 -0.28 1.00 16 LS Contribution 283.32 15.07 4.27 4.27 Total: -1.00 -30.44 283.32 -8.21 -38.65 By element: Atomic # 1 Polarization: 10.84 SS G_CDS: -5.03 Total: 5.81 kcal Atomic # 6 Polarization: -15.20 SS G_CDS: -3.33 Total: -18.52 kcal Atomic # 7 Polarization: -47.86 SS G_CDS: 0.03 Total: -47.84 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -4.14 Total: 17.63 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -30.44 -8.21 -38.65 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000125667032.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.242 kcal (2) G-P(sol) polarization free energy of solvation -30.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.651 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds