Wall clock time and date at job start Mon Mar 30 2020 04:06:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08998 * 109.46562 * 2 1 4 4 C 1.50693 * 109.47010 * 120.00333 * 2 1 3 5 5 H 1.08002 * 119.99868 * 120.00082 * 4 2 1 6 6 C 1.37874 * 120.00359 * 299.99769 * 4 2 1 7 7 N 1.31512 * 120.00054 * 179.97438 * 6 4 2 8 8 Si 1.86802 * 119.99745 * 0.02562 * 6 4 2 9 9 H 1.48493 * 109.47442 * 89.99686 * 8 6 4 10 10 H 1.48501 * 109.46660 * 209.99872 * 8 6 4 11 11 H 1.48496 * 109.47079 * 329.99267 * 8 6 4 12 12 N 1.46900 * 109.46779 * 240.00710 * 2 1 3 13 13 C 1.47162 * 110.99769 * 182.96884 * 12 2 1 14 14 C 1.53220 * 108.23071 * 165.08789 * 13 12 2 15 15 C 1.50727 * 109.85808 * 50.87329 * 14 13 12 16 16 C 1.38751 * 118.46726 * 162.52361 * 15 14 13 17 17 C 1.38076 * 120.50551 * 179.49922 * 16 15 14 18 18 C 1.38128 * 119.91941 * 0.03125 * 17 16 15 19 19 C 1.38703 * 119.77925 * 0.09025 * 18 17 16 20 20 N 1.39675 * 119.88733 * 179.97438 * 19 18 17 21 21 C 1.37707 * 121.64542 * 342.51980 * 15 14 13 22 22 C 1.46626 * 111.00415 * 59.99973 * 12 2 1 23 23 H 1.08996 * 109.47065 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.46862 * 299.99364 * 1 2 3 25 25 H 1.09004 * 109.47311 * 59.99621 * 1 2 3 26 26 H 0.97000 * 119.99859 * 180.02562 * 7 6 4 27 27 H 1.08992 * 109.63307 * 285.13103 * 13 12 2 28 28 H 1.09008 * 109.62715 * 45.51077 * 13 12 2 29 29 H 1.08998 * 109.99961 * 290.41023 * 14 13 12 30 30 H 1.09003 * 108.89572 * 170.64467 * 14 13 12 31 31 H 1.08000 * 119.74170 * 359.48663 * 16 15 14 32 32 H 1.08000 * 120.04166 * 180.02562 * 17 16 15 33 33 H 1.07999 * 120.11007 * 180.02562 * 18 17 16 34 34 H 0.96999 * 120.00193 * 0.02562 * 20 19 18 35 35 H 0.97005 * 119.99698 * 179.97438 * 20 19 18 36 36 H 1.09001 * 109.30288 * 55.68535 * 22 12 2 37 37 H 1.09004 * 109.13875 * 296.20161 * 22 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6533 -1.5886 1.1312 6 6 1.6993 -0.2395 2.4827 7 7 2.1373 -0.8599 3.5564 8 14 0.6249 1.2789 2.6542 9 1 -0.8027 0.8726 2.6998 10 1 0.9761 1.9948 3.9069 11 1 0.8472 2.1764 1.4922 12 7 2.0196 -0.6924 -1.1995 13 6 3.4890 -0.7739 -1.1985 14 6 3.9124 -1.8077 -2.2472 15 6 3.2394 -1.5082 -3.5622 16 6 3.7557 -2.0820 -4.7152 17 6 3.1661 -1.8445 -5.9409 18 6 2.0539 -1.0295 -6.0241 19 6 1.5357 -0.4518 -4.8745 20 7 0.4115 0.3731 -4.9561 21 6 2.1366 -0.6870 -3.6389 22 6 1.5495 -0.0274 -2.4189 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5137 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 1.9027 -0.5287 4.4374 27 1 3.9101 0.2010 -1.4437 28 1 3.8377 -1.0861 -0.2141 29 1 3.6336 -2.8086 -1.9178 30 1 4.9938 -1.7584 -2.3749 31 1 4.6256 -2.7190 -4.6534 32 1 3.5740 -2.2952 -6.8336 33 1 1.5900 -0.8420 -6.9812 34 1 -0.0057 0.5408 -5.8155 35 1 0.0475 0.7777 -4.1530 36 1 1.8493 1.0203 -2.3964 37 1 0.4622 -0.0900 -2.4635 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000125667032.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:06:58 Heat of formation + Delta-G solvation = 14.049164 kcal Electronic energy + Delta-G solvation = -18072.677856 eV Core-core repulsion = 15427.607205 eV Total energy + Delta-G solvation = -2645.070651 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.10429 -38.64135 -35.97124 -35.09343 -33.47714 -31.52946 -30.93129 -28.80876 -27.32705 -25.57123 -24.10976 -22.36208 -21.95371 -20.34862 -18.91497 -18.11317 -17.44093 -16.98261 -16.34279 -15.93379 -15.69062 -15.50647 -14.96511 -14.82816 -14.50826 -14.20922 -13.89207 -13.73449 -13.51687 -12.97724 -12.88990 -12.61698 -12.51591 -12.38195 -12.08589 -11.78939 -11.48739 -11.34744 -11.19407 -10.95139 -10.72583 -9.41981 -9.05485 -8.28645 -8.28494 -6.31583 0.58544 0.79428 1.29021 1.34063 1.44003 2.30973 2.98928 3.03128 3.06397 3.21903 3.88581 3.93179 4.19624 4.30556 4.34402 4.44563 4.50226 4.58764 4.61783 4.68756 4.72658 4.80350 4.85263 4.95660 5.07429 5.09466 5.19202 5.27541 5.40742 5.52266 5.62889 5.72928 5.86327 6.03799 6.13574 6.33547 6.64921 6.69802 6.74540 7.04313 7.32834 8.87656 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.035905 B = 0.006520 C = 0.005668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 779.644938 B = 4293.760479 C = 4938.895197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.183 3.817 3 H -0.012 1.012 4 C -0.507 4.507 5 H 0.044 0.956 6 C 0.014 3.986 7 N -0.946 5.946 8 Si 0.948 3.052 9 H -0.264 1.264 10 H -0.298 1.298 11 H -0.253 1.253 12 N -0.527 5.527 13 C 0.058 3.942 14 C -0.070 4.070 15 C -0.037 4.037 16 C -0.191 4.191 17 C -0.073 4.073 18 C -0.212 4.212 19 C 0.214 3.786 20 N -0.870 5.870 21 C -0.175 4.175 22 C 0.103 3.897 23 H 0.054 0.946 24 H 0.036 0.964 25 H 0.063 0.937 26 H 0.266 0.734 27 H 0.022 0.978 28 H 0.067 0.933 29 H 0.074 0.926 30 H 0.092 0.908 31 H 0.131 0.869 32 H 0.147 0.853 33 H 0.142 0.858 34 H 0.408 0.592 35 H 0.399 0.601 36 H 0.026 0.974 37 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.505 2.598 -19.872 20.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.075 3.925 3 H 0.006 0.994 4 C -0.545 4.545 5 H 0.063 0.937 6 C -0.183 4.183 7 N -0.586 5.586 8 Si 0.775 3.225 9 H -0.190 1.190 10 H -0.226 1.226 11 H -0.178 1.178 12 N -0.251 5.251 13 C -0.070 4.070 14 C -0.107 4.107 15 C -0.038 4.038 16 C -0.211 4.211 17 C -0.091 4.091 18 C -0.234 4.234 19 C 0.108 3.892 20 N -0.411 5.411 21 C -0.180 4.180 22 C -0.025 4.025 23 H 0.073 0.927 24 H 0.055 0.945 25 H 0.082 0.918 26 H 0.075 0.925 27 H 0.041 0.959 28 H 0.086 0.914 29 H 0.092 0.908 30 H 0.110 0.890 31 H 0.149 0.851 32 H 0.165 0.835 33 H 0.160 0.840 34 H 0.239 0.761 35 H 0.228 0.772 36 H 0.044 0.956 37 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -1.684 2.102 -19.678 19.861 hybrid contribution -0.319 1.467 0.952 1.778 sum -2.003 3.569 -18.726 19.168 Atomic orbital electron populations 1.22091 0.96687 1.01455 0.99623 1.19559 0.92892 0.91547 0.88527 0.99412 1.21182 1.31008 1.12434 0.89874 0.93743 1.25743 0.97368 0.99879 0.95345 1.70026 1.47689 1.42407 0.98524 0.85871 0.79442 0.80067 0.77117 1.18970 1.22578 1.17758 1.62202 1.09787 1.51880 1.01246 1.22106 0.88081 0.97205 0.99639 1.20584 0.99875 0.99040 0.91203 1.19558 0.93972 0.94839 0.95393 1.21044 1.03237 1.04799 0.92033 1.21108 0.94376 0.95922 0.97740 1.20750 1.01039 1.04671 0.96970 1.17783 0.87813 0.90859 0.92758 1.42494 1.31250 1.54537 1.12813 1.19192 0.99953 1.05633 0.93231 1.20735 0.99651 0.94224 0.87916 0.92681 0.94512 0.91800 0.92509 0.95930 0.91436 0.90757 0.89009 0.85149 0.83509 0.83993 0.76129 0.77187 0.95571 0.89866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.97 8.43 71.98 0.61 -5.37 16 2 C 0.18 8.71 1.63 44.17 0.07 8.78 16 3 H -0.01 -0.57 7.20 -2.39 -0.02 -0.58 16 4 C -0.51 -29.05 8.31 25.60 0.21 -28.84 16 5 H 0.04 2.84 6.83 -2.91 -0.02 2.82 16 6 C 0.01 0.82 5.45 84.65 0.46 1.28 16 7 N -0.95 -59.15 13.96 21.45 0.30 -58.85 16 8 Si 0.95 44.96 24.37 68.60 1.67 46.63 16 9 H -0.26 -11.83 6.87 99.48 0.68 -11.15 16 10 H -0.30 -14.08 7.11 99.48 0.71 -13.38 16 11 H -0.25 -11.25 6.53 99.48 0.65 -10.60 16 12 N -0.53 -22.47 4.53 -879.67 -3.99 -26.45 16 13 C 0.06 2.36 5.39 86.33 0.47 2.83 16 14 C -0.07 -2.33 5.96 29.93 0.18 -2.15 16 15 C -0.04 -1.16 5.77 -19.86 -0.11 -1.28 16 16 C -0.19 -4.94 9.65 22.35 0.22 -4.72 16 17 C -0.07 -1.59 10.04 22.21 0.22 -1.37 16 18 C -0.21 -4.65 9.89 22.35 0.22 -4.43 16 19 C 0.21 5.52 6.73 38.28 0.26 5.78 16 20 N -0.87 -17.00 8.97 -51.20 -0.46 -17.46 16 21 C -0.18 -5.59 5.81 -19.74 -0.11 -5.71 16 22 C 0.10 3.58 3.96 85.58 0.34 3.92 16 23 H 0.05 2.38 8.14 -2.39 -0.02 2.36 16 24 H 0.04 1.58 3.27 -2.39 -0.01 1.57 16 25 H 0.06 2.20 6.49 -2.38 -0.02 2.19 16 26 H 0.27 15.58 8.31 -92.71 -0.77 14.81 16 27 H 0.02 0.90 8.05 -2.39 -0.02 0.88 16 28 H 0.07 3.16 5.94 -2.38 -0.01 3.15 16 29 H 0.07 2.59 8.14 -2.39 -0.02 2.57 16 30 H 0.09 2.59 8.14 -2.39 -0.02 2.57 16 31 H 0.13 2.84 8.06 -2.91 -0.02 2.82 16 32 H 0.15 2.23 8.06 -2.91 -0.02 2.21 16 33 H 0.14 2.28 8.06 -2.91 -0.02 2.25 16 34 H 0.41 5.53 8.84 -92.71 -0.82 4.71 16 35 H 0.40 7.75 6.93 -92.70 -0.64 7.10 16 36 H 0.03 0.93 8.13 -2.39 -0.02 0.91 16 37 H 0.08 2.68 5.40 -2.38 -0.01 2.67 16 Total: -1.00 -67.64 283.32 0.10 -67.53 By element: Atomic # 1 Polarization: 20.32 SS G_CDS: -0.45 Total: 19.87 kcal Atomic # 6 Polarization: -34.30 SS G_CDS: 3.02 Total: -31.27 kcal Atomic # 7 Polarization: -98.61 SS G_CDS: -4.15 Total: -102.76 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 1.67 Total: 46.63 kcal Total: -67.64 0.10 -67.53 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000125667032.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.584 kcal (2) G-P(sol) polarization free energy of solvation -67.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.535 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds