Wall clock time and date at job start Mon Mar 30 2020 04:07:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09000 * 109.46411 * 2 1 4 4 C 1.50699 * 109.47178 * 239.99751 * 2 1 3 5 5 H 1.07998 * 120.00101 * 354.61440 * 4 2 1 6 6 C 1.37878 * 119.99453 * 174.61207 * 4 2 1 7 7 N 1.31519 * 119.99482 * 180.55957 * 6 4 2 8 8 Si 1.86795 * 120.00475 * 0.55614 * 6 4 2 9 9 H 1.48502 * 109.46981 * 84.38052 * 8 6 4 10 10 H 1.48495 * 109.47433 * 204.38254 * 8 6 4 11 11 H 1.48502 * 109.46865 * 324.38481 * 8 6 4 12 12 N 1.46899 * 109.47069 * 119.99255 * 2 1 3 13 13 C 1.47161 * 110.99632 * 57.98560 * 12 2 1 14 14 C 1.52892 * 108.50625 * 165.36905 * 13 12 2 15 15 C 1.50734 * 109.95889 * 50.41323 * 14 13 12 16 16 C 1.38746 * 118.45100 * 163.28785 * 15 14 13 17 17 C 1.38081 * 120.50884 * 179.59129 * 16 15 14 18 18 C 1.38134 * 119.90592 * 359.97438 * 17 16 15 19 19 C 1.38690 * 119.78714 * 0.08484 * 18 17 16 20 20 N 1.39672 * 119.89025 * 179.97438 * 19 18 17 21 21 C 1.37701 * 121.65169 * 343.01679 * 15 14 13 22 22 C 1.46629 * 111.00500 * 295.00536 * 12 2 1 23 23 H 1.09000 * 109.47537 * 297.80785 * 1 2 3 24 24 H 1.09001 * 109.47198 * 57.81374 * 1 2 3 25 25 H 1.09002 * 109.46482 * 177.80588 * 1 2 3 26 26 H 0.96996 * 119.99811 * 180.02562 * 7 6 4 27 27 H 1.08998 * 109.63672 * 285.07412 * 13 12 2 28 28 H 1.09006 * 109.63425 * 45.66987 * 13 12 2 29 29 H 1.08991 * 109.39553 * 290.26357 * 14 13 12 30 30 H 1.08999 * 109.30576 * 170.50495 * 14 13 12 31 31 H 1.07993 * 119.75278 * 359.54709 * 16 15 14 32 32 H 1.08002 * 120.04873 * 180.02562 * 17 16 15 33 33 H 1.07997 * 120.10526 * 180.02562 * 18 17 16 34 34 H 0.97003 * 120.00116 * 180.02562 * 20 19 18 35 35 H 0.96999 * 120.00555 * 0.02562 * 20 19 18 36 36 H 1.08996 * 109.26702 * 296.16999 * 22 12 2 37 37 H 1.09007 * 109.27138 * 55.67136 * 22 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 1.3345 -1.1963 -1.8962 6 6 3.3830 -0.7401 -1.5061 7 7 3.8205 -1.3507 -2.5857 8 14 4.5915 0.0868 -0.3463 9 1 4.9288 -0.8422 0.7620 10 1 5.8276 0.4405 -1.0893 11 1 3.9787 1.3196 0.2104 12 7 2.0197 -0.6923 1.1995 13 6 1.5088 -2.0712 1.2580 14 6 2.3208 -2.8460 2.2962 15 6 2.3758 -2.0721 3.5885 16 6 2.7524 -2.7412 4.7441 17 6 2.8252 -2.0718 5.9496 18 6 2.5220 -0.7254 6.0092 19 6 2.1439 -0.0527 4.8568 20 7 1.8364 1.3085 4.9146 21 6 2.0689 -0.7308 3.6411 22 6 1.6494 0.0380 2.4159 23 1 -0.3634 0.4794 0.9090 24 1 -0.3634 0.5474 -0.8697 25 1 -0.3632 -1.0270 -0.0393 26 1 4.7706 -1.3720 -2.7795 27 1 0.4583 -2.0605 1.5485 28 1 1.6170 -2.5436 0.2816 29 1 3.3333 -2.9992 1.9229 30 1 1.8502 -3.8130 2.4733 31 1 2.9898 -3.7938 4.7008 32 1 3.1196 -2.5999 6.8446 33 1 2.5783 -0.1986 6.9502 34 1 1.5714 1.7805 4.1097 35 1 1.8877 1.7819 5.7596 36 1 2.1415 1.0105 2.4154 37 1 0.5690 0.1817 2.4343 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000125667296.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:07:00 Heat of formation + Delta-G solvation = 27.855090 kcal Electronic energy + Delta-G solvation = -18433.096022 eV Core-core repulsion = 15788.624041 eV Total energy + Delta-G solvation = -2644.471981 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.86954 -37.25024 -34.76268 -33.10410 -31.68340 -30.18431 -28.97111 -27.60967 -25.61532 -23.83900 -23.06765 -21.22181 -20.26647 -18.50338 -17.06331 -16.65622 -16.21743 -15.35510 -14.86426 -14.45867 -14.11753 -13.78817 -13.49107 -13.24156 -13.01023 -12.74578 -12.55505 -12.02674 -11.75957 -11.41788 -11.27546 -11.09219 -10.83051 -10.65399 -10.37116 -10.21984 -9.98175 -9.78458 -9.57001 -9.05243 -8.51503 -8.17964 -7.36863 -7.13124 -6.01033 -4.08073 1.73722 1.90251 3.54213 3.58833 3.72343 4.02566 4.13681 4.63064 4.80463 5.11731 5.16318 5.38634 5.48579 5.62908 5.70364 5.79590 5.93197 5.95994 6.07030 6.16772 6.19918 6.25033 6.30415 6.36193 6.47781 6.58711 6.71190 6.76324 6.84999 6.97405 7.10428 7.16001 7.22644 7.66809 7.68537 7.88550 8.03433 8.27333 8.59166 8.99199 9.64137 11.08641 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.025913 B = 0.008216 C = 0.007965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1080.260050 B = 3407.080001 C = 3514.381339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.168 3.832 3 H 0.043 0.957 4 C -0.512 4.512 5 H 0.072 0.928 6 C 0.085 3.915 7 N -0.899 5.899 8 Si 0.917 3.083 9 H -0.270 1.270 10 H -0.313 1.313 11 H -0.276 1.276 12 N -0.524 5.524 13 C 0.064 3.936 14 C -0.082 4.082 15 C -0.015 4.015 16 C -0.183 4.183 17 C -0.080 4.080 18 C -0.212 4.212 19 C 0.215 3.785 20 N -0.881 5.881 21 C -0.144 4.144 22 C 0.091 3.909 23 H 0.029 0.971 24 H 0.051 0.949 25 H 0.048 0.952 26 H 0.263 0.737 27 H 0.023 0.977 28 H 0.099 0.901 29 H 0.083 0.917 30 H 0.070 0.930 31 H 0.114 0.886 32 H 0.114 0.886 33 H 0.113 0.887 34 H 0.398 0.602 35 H 0.393 0.607 36 H 0.066 0.934 37 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.813 1.355 15.458 15.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.063 3.937 3 H 0.061 0.939 4 C -0.550 4.550 5 H 0.090 0.910 6 C -0.119 4.119 7 N -0.536 5.536 8 Si 0.748 3.252 9 H -0.195 1.195 10 H -0.242 1.242 11 H -0.202 1.202 12 N -0.249 5.249 13 C -0.064 4.064 14 C -0.119 4.119 15 C -0.016 4.016 16 C -0.203 4.203 17 C -0.099 4.099 18 C -0.235 4.235 19 C 0.110 3.890 20 N -0.421 5.421 21 C -0.148 4.148 22 C -0.037 4.037 23 H 0.048 0.952 24 H 0.070 0.930 25 H 0.067 0.933 26 H 0.072 0.928 27 H 0.041 0.959 28 H 0.117 0.883 29 H 0.101 0.899 30 H 0.088 0.912 31 H 0.132 0.868 32 H 0.132 0.868 33 H 0.131 0.869 34 H 0.227 0.773 35 H 0.221 0.779 36 H 0.084 0.916 37 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -3.143 1.254 15.301 15.671 hybrid contribution -0.151 0.846 0.770 1.154 sum -3.294 2.100 16.071 16.539 Atomic orbital electron populations 1.22297 0.99968 1.00784 0.99286 1.19901 0.89803 0.95461 0.88518 0.93868 1.20828 0.93107 1.35971 1.05116 0.91001 1.24994 0.98637 0.93936 0.94349 1.69953 1.14868 1.42983 1.25838 0.86196 0.78334 0.80377 0.80335 1.19537 1.24204 1.20200 1.62926 1.58799 1.02068 1.01123 1.21914 0.94344 0.90322 0.99852 1.20671 1.02119 0.97160 0.91972 1.19523 0.94350 0.92631 0.95086 1.20846 1.07075 0.99869 0.92491 1.20687 0.98148 0.93726 0.97294 1.20346 1.11218 0.95461 0.96443 1.17688 0.93710 0.84269 0.93286 1.42510 1.79012 1.07505 1.13025 1.19236 1.08088 0.94217 0.93291 1.20769 0.97358 0.96549 0.89032 0.95215 0.92997 0.93265 0.92750 0.95910 0.88324 0.89906 0.91176 0.86798 0.86757 0.86920 0.77333 0.77909 0.91608 0.94471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.26 8.44 37.16 0.31 -2.94 16 2 C 0.17 3.88 1.70 -68.86 -0.12 3.76 16 3 H 0.04 1.04 6.90 -51.93 -0.36 0.68 16 4 C -0.51 -13.97 7.70 -34.44 -0.27 -14.23 16 5 H 0.07 2.12 7.99 -52.49 -0.42 1.70 16 6 C 0.08 2.43 5.47 -17.82 -0.10 2.33 16 7 N -0.90 -27.27 13.96 55.43 0.77 -26.50 16 8 Si 0.92 23.63 26.26 -169.99 -4.46 19.16 16 9 H -0.27 -7.05 7.11 56.52 0.40 -6.65 16 10 H -0.31 -8.15 7.11 56.52 0.40 -7.75 16 11 H -0.28 -6.93 6.53 56.52 0.37 -6.56 16 12 N -0.52 -11.30 2.71 -229.60 -0.62 -11.92 16 13 C 0.06 1.27 4.47 -3.74 -0.02 1.26 16 14 C -0.08 -1.47 5.94 -27.92 -0.17 -1.63 16 15 C -0.01 -0.26 5.77 -104.61 -0.60 -0.87 16 16 C -0.18 -2.79 9.65 -39.45 -0.38 -3.17 16 17 C -0.08 -1.10 10.04 -39.68 -0.40 -1.50 16 18 C -0.21 -2.93 9.89 -39.45 -0.39 -3.32 16 19 C 0.21 3.27 6.73 -83.69 -0.56 2.71 16 20 N -0.88 -10.59 8.97 32.46 0.29 -10.30 16 21 C -0.14 -2.54 5.81 -104.43 -0.61 -3.15 16 22 C 0.09 1.69 4.26 -5.17 -0.02 1.67 16 23 H 0.03 0.52 6.33 -51.93 -0.33 0.19 16 24 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 25 H 0.05 0.97 6.84 -51.93 -0.36 0.61 16 26 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 27 H 0.02 0.43 7.13 -51.93 -0.37 0.06 16 28 H 0.10 2.21 6.76 -51.93 -0.35 1.85 16 29 H 0.08 1.60 8.14 -51.93 -0.42 1.18 16 30 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 31 H 0.11 1.52 8.06 -52.49 -0.42 1.10 16 32 H 0.11 1.25 8.06 -52.49 -0.42 0.83 16 33 H 0.11 1.28 8.06 -52.49 -0.42 0.85 16 34 H 0.40 4.67 6.94 -40.82 -0.28 4.38 16 35 H 0.39 3.62 8.84 -40.82 -0.36 3.26 16 36 H 0.07 1.20 7.06 -51.93 -0.37 0.84 16 37 H 0.04 0.66 6.18 -51.93 -0.32 0.34 16 LS Contribution 286.39 15.07 4.32 4.32 Total: -1.00 -30.72 286.39 -8.24 -38.96 By element: Atomic # 1 Polarization: 10.60 SS G_CDS: -5.22 Total: 5.38 kcal Atomic # 6 Polarization: -15.78 SS G_CDS: -3.31 Total: -19.09 kcal Atomic # 7 Polarization: -49.17 SS G_CDS: 0.44 Total: -48.73 kcal Atomic # 14 Polarization: 23.63 SS G_CDS: -4.46 Total: 19.16 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -30.72 -8.24 -38.96 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000125667296.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.811 kcal (2) G-P(sol) polarization free energy of solvation -30.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.956 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds