Wall clock time and date at job start Mon Mar 30 2020 04:06:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09000 * 109.46411 * 2 1 4 4 C 1.50699 * 109.47178 * 239.99751 * 2 1 3 5 5 H 1.07998 * 120.00101 * 354.61440 * 4 2 1 6 6 C 1.37878 * 119.99453 * 174.61207 * 4 2 1 7 7 N 1.31519 * 119.99482 * 180.55957 * 6 4 2 8 8 Si 1.86795 * 120.00475 * 0.55614 * 6 4 2 9 9 H 1.48502 * 109.46981 * 84.38052 * 8 6 4 10 10 H 1.48495 * 109.47433 * 204.38254 * 8 6 4 11 11 H 1.48502 * 109.46865 * 324.38481 * 8 6 4 12 12 N 1.46899 * 109.47069 * 119.99255 * 2 1 3 13 13 C 1.47161 * 110.99632 * 57.98560 * 12 2 1 14 14 C 1.52892 * 108.50625 * 165.36905 * 13 12 2 15 15 C 1.50734 * 109.95889 * 50.41323 * 14 13 12 16 16 C 1.38746 * 118.45100 * 163.28785 * 15 14 13 17 17 C 1.38081 * 120.50884 * 179.59129 * 16 15 14 18 18 C 1.38134 * 119.90592 * 359.97438 * 17 16 15 19 19 C 1.38690 * 119.78714 * 0.08484 * 18 17 16 20 20 N 1.39672 * 119.89025 * 179.97438 * 19 18 17 21 21 C 1.37701 * 121.65169 * 343.01679 * 15 14 13 22 22 C 1.46629 * 111.00500 * 295.00536 * 12 2 1 23 23 H 1.09000 * 109.47537 * 297.80785 * 1 2 3 24 24 H 1.09001 * 109.47198 * 57.81374 * 1 2 3 25 25 H 1.09002 * 109.46482 * 177.80588 * 1 2 3 26 26 H 0.96996 * 119.99811 * 180.02562 * 7 6 4 27 27 H 1.08998 * 109.63672 * 285.07412 * 13 12 2 28 28 H 1.09006 * 109.63425 * 45.66987 * 13 12 2 29 29 H 1.08991 * 109.39553 * 290.26357 * 14 13 12 30 30 H 1.08999 * 109.30576 * 170.50495 * 14 13 12 31 31 H 1.07993 * 119.75278 * 359.54709 * 16 15 14 32 32 H 1.08002 * 120.04873 * 180.02562 * 17 16 15 33 33 H 1.07997 * 120.10526 * 180.02562 * 18 17 16 34 34 H 0.97003 * 120.00116 * 180.02562 * 20 19 18 35 35 H 0.96999 * 120.00555 * 0.02562 * 20 19 18 36 36 H 1.08996 * 109.26702 * 296.16999 * 22 12 2 37 37 H 1.09007 * 109.27138 * 55.67136 * 22 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 1.3345 -1.1963 -1.8962 6 6 3.3830 -0.7401 -1.5061 7 7 3.8205 -1.3507 -2.5857 8 14 4.5915 0.0868 -0.3463 9 1 4.9288 -0.8422 0.7620 10 1 5.8276 0.4405 -1.0893 11 1 3.9787 1.3196 0.2104 12 7 2.0197 -0.6923 1.1995 13 6 1.5088 -2.0712 1.2580 14 6 2.3208 -2.8460 2.2962 15 6 2.3758 -2.0721 3.5885 16 6 2.7524 -2.7412 4.7441 17 6 2.8252 -2.0718 5.9496 18 6 2.5220 -0.7254 6.0092 19 6 2.1439 -0.0527 4.8568 20 7 1.8364 1.3085 4.9146 21 6 2.0689 -0.7308 3.6411 22 6 1.6494 0.0380 2.4159 23 1 -0.3634 0.4794 0.9090 24 1 -0.3634 0.5474 -0.8697 25 1 -0.3632 -1.0270 -0.0393 26 1 4.7706 -1.3720 -2.7795 27 1 0.4583 -2.0605 1.5485 28 1 1.6170 -2.5436 0.2816 29 1 3.3333 -2.9992 1.9229 30 1 1.8502 -3.8130 2.4733 31 1 2.9898 -3.7938 4.7008 32 1 3.1196 -2.5999 6.8446 33 1 2.5783 -0.1986 6.9502 34 1 1.5714 1.7805 4.1097 35 1 1.8877 1.7819 5.7596 36 1 2.1415 1.0105 2.4154 37 1 0.5690 0.1817 2.4343 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000125667296.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:06:59 Heat of formation + Delta-G solvation = 7.882281 kcal Electronic energy + Delta-G solvation = -18433.962108 eV Core-core repulsion = 15788.624041 eV Total energy + Delta-G solvation = -2645.338067 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.14541 -38.75151 -35.90832 -34.86060 -33.46884 -31.54445 -30.44771 -28.81418 -27.53544 -25.36074 -24.48853 -22.40560 -21.86347 -20.05352 -18.87540 -17.95070 -17.40459 -16.81056 -16.32312 -16.02763 -15.70420 -15.35538 -14.91453 -14.74566 -14.42638 -14.35811 -14.01512 -13.64856 -13.09382 -12.94821 -12.81350 -12.64864 -12.50428 -12.31908 -11.97468 -11.75184 -11.70209 -11.34536 -11.17525 -11.00635 -10.73594 -9.41105 -8.90952 -8.29469 -8.23611 -6.32518 0.57659 0.77744 1.43192 1.51829 1.62478 2.48693 2.95083 3.00323 3.09004 3.52382 3.90586 3.94119 4.21631 4.35060 4.39956 4.45822 4.47145 4.59578 4.64085 4.72330 4.74841 4.81332 4.84765 5.05894 5.08900 5.14564 5.25044 5.34748 5.41444 5.52500 5.65858 5.72671 5.88115 6.07778 6.12507 6.51339 6.60266 6.64635 6.84130 7.03588 7.42093 8.89058 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.025913 B = 0.008216 C = 0.007965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1080.260050 B = 3407.080001 C = 3514.381339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.170 3.830 3 H 0.038 0.962 4 C -0.505 4.505 5 H 0.037 0.963 6 C 0.036 3.964 7 N -0.945 5.945 8 Si 0.974 3.026 9 H -0.276 1.276 10 H -0.317 1.317 11 H -0.262 1.262 12 N -0.542 5.542 13 C 0.069 3.931 14 C -0.076 4.076 15 C -0.038 4.038 16 C -0.193 4.193 17 C -0.074 4.074 18 C -0.211 4.211 19 C 0.212 3.788 20 N -0.870 5.870 21 C -0.175 4.175 22 C 0.098 3.902 23 H 0.057 0.943 24 H 0.052 0.948 25 H 0.044 0.956 26 H 0.263 0.737 27 H 0.034 0.966 28 H 0.064 0.936 29 H 0.060 0.940 30 H 0.093 0.907 31 H 0.128 0.872 32 H 0.147 0.853 33 H 0.142 0.858 34 H 0.399 0.601 35 H 0.408 0.592 36 H 0.067 0.933 37 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.132 2.283 18.993 19.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.065 3.935 3 H 0.056 0.944 4 C -0.543 4.543 5 H 0.055 0.945 6 C -0.163 4.163 7 N -0.585 5.585 8 Si 0.804 3.196 9 H -0.202 1.202 10 H -0.246 1.246 11 H -0.187 1.187 12 N -0.267 5.267 13 C -0.058 4.058 14 C -0.114 4.114 15 C -0.039 4.039 16 C -0.213 4.213 17 C -0.092 4.092 18 C -0.234 4.234 19 C 0.106 3.894 20 N -0.411 5.411 21 C -0.180 4.180 22 C -0.030 4.030 23 H 0.076 0.924 24 H 0.071 0.929 25 H 0.063 0.937 26 H 0.072 0.928 27 H 0.052 0.948 28 H 0.082 0.918 29 H 0.078 0.922 30 H 0.111 0.889 31 H 0.146 0.854 32 H 0.164 0.836 33 H 0.160 0.840 34 H 0.228 0.772 35 H 0.239 0.761 36 H 0.085 0.915 37 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -3.485 2.214 18.863 19.310 hybrid contribution -0.130 0.537 -0.268 0.614 sum -3.615 2.750 18.595 19.142 Atomic orbital electron populations 1.22165 0.97562 1.00914 1.00784 1.19718 0.91806 0.94399 0.87626 0.94368 1.21059 0.92338 1.34712 1.06177 0.94519 1.25664 1.00351 0.94797 0.95487 1.70067 1.15128 1.45428 1.27899 0.85277 0.76336 0.79807 0.78222 1.20215 1.24616 1.18695 1.62625 1.59459 1.02788 1.01816 1.21811 0.95453 0.89737 0.98838 1.20580 1.00558 0.98231 0.91991 1.19568 0.96040 0.92976 0.95286 1.21048 1.07131 1.00758 0.92399 1.21096 0.96465 0.93911 0.97775 1.20739 1.09877 0.95697 0.97086 1.17801 0.93364 0.85362 0.92883 1.42483 1.78074 1.06511 1.14000 1.19259 1.10427 0.94548 0.93754 1.20727 0.97936 0.96306 0.88043 0.92376 0.92916 0.93718 0.92818 0.94772 0.91759 0.92164 0.88859 0.85383 0.83553 0.83982 0.77151 0.76143 0.91494 0.93560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.00 8.44 71.98 0.61 -5.40 16 2 C 0.17 7.82 1.70 44.17 0.08 7.90 16 3 H 0.04 1.80 6.90 -2.39 -0.02 1.78 16 4 C -0.50 -28.34 7.70 25.60 0.20 -28.14 16 5 H 0.04 2.27 7.99 -2.91 -0.02 2.25 16 6 C 0.04 2.13 5.47 84.65 0.46 2.59 16 7 N -0.95 -59.42 13.96 21.45 0.30 -59.12 16 8 Si 0.97 49.58 26.26 68.60 1.80 51.38 16 9 H -0.28 -14.25 7.11 99.48 0.71 -13.54 16 10 H -0.32 -16.18 7.11 99.48 0.71 -15.47 16 11 H -0.26 -12.59 6.53 99.48 0.65 -11.94 16 12 N -0.54 -23.06 2.71 -880.34 -2.39 -25.44 16 13 C 0.07 2.80 4.47 86.22 0.39 3.19 16 14 C -0.08 -2.71 5.94 29.82 0.18 -2.53 16 15 C -0.04 -1.26 5.77 -19.86 -0.11 -1.38 16 16 C -0.19 -5.37 9.65 22.35 0.22 -5.16 16 17 C -0.07 -1.73 10.04 22.21 0.22 -1.51 16 18 C -0.21 -4.93 9.89 22.35 0.22 -4.71 16 19 C 0.21 5.74 6.73 38.28 0.26 5.99 16 20 N -0.87 -17.88 8.97 -51.21 -0.46 -18.34 16 21 C -0.18 -5.81 5.81 -19.74 -0.11 -5.92 16 22 C 0.10 3.44 4.26 85.58 0.36 3.80 16 23 H 0.06 1.90 6.33 -2.39 -0.02 1.89 16 24 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 25 H 0.04 1.74 6.84 -2.39 -0.02 1.72 16 26 H 0.26 15.70 8.31 -92.71 -0.77 14.93 16 27 H 0.03 1.28 7.13 -2.39 -0.02 1.26 16 28 H 0.06 2.99 6.76 -2.38 -0.02 2.98 16 29 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 30 H 0.09 2.77 8.14 -2.39 -0.02 2.75 16 31 H 0.13 3.07 8.06 -2.91 -0.02 3.05 16 32 H 0.15 2.44 8.06 -2.91 -0.02 2.42 16 33 H 0.14 2.44 8.06 -2.91 -0.02 2.42 16 34 H 0.40 8.13 6.94 -92.71 -0.64 7.48 16 35 H 0.41 5.90 8.84 -92.71 -0.82 5.08 16 36 H 0.07 2.30 7.06 -2.39 -0.02 2.28 16 37 H 0.05 1.52 6.18 -2.38 -0.01 1.51 16 Total: -1.00 -67.38 286.39 1.78 -65.60 By element: Atomic # 1 Polarization: 17.62 SS G_CDS: -0.43 Total: 17.19 kcal Atomic # 6 Polarization: -34.23 SS G_CDS: 2.96 Total: -31.27 kcal Atomic # 7 Polarization: -100.35 SS G_CDS: -2.55 Total: -102.90 kcal Atomic # 14 Polarization: 49.58 SS G_CDS: 1.80 Total: 51.38 kcal Total: -67.38 1.78 -65.60 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000125667296.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.481 kcal (2) G-P(sol) polarization free energy of solvation -67.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.599 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds