Wall clock time and date at job start Mon Mar 30 2020 03:35:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86796 * 119.99727 * 2 1 4 4 H 1.48503 * 109.47100 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47464 * 300.00111 * 3 2 1 6 6 H 1.48502 * 109.47234 * 60.00335 * 3 2 1 7 7 C 1.37875 * 119.99661 * 180.02562 * 2 1 3 8 8 H 1.08009 * 119.99408 * 174.60709 * 7 2 1 9 9 C 1.50696 * 120.00410 * 354.59912 * 7 2 1 10 10 H 1.08995 * 109.47312 * 333.74138 * 9 7 2 11 11 C 1.50697 * 109.47081 * 93.74534 * 9 7 2 12 12 C 1.38231 * 120.00039 * 253.23500 * 11 9 7 13 13 C 1.38240 * 120.00287 * 179.97438 * 12 11 9 14 14 C 1.38236 * 119.99856 * 0.02562 * 13 12 11 15 15 C 1.38239 * 119.99826 * 0.25481 * 14 13 12 16 16 C 1.38231 * 119.99850 * 359.49069 * 15 14 13 17 17 N 1.46897 * 109.47076 * 213.74485 * 9 7 2 18 18 C 1.47437 * 111.00464 * 59.38631 * 17 9 7 19 19 C 1.54320 * 107.23552 * 123.25556 * 18 17 9 20 20 C 1.55139 * 103.01929 * 22.28637 * 19 18 17 21 21 H 1.09003 * 110.98746 * 82.47540 * 20 19 18 22 22 N 1.46893 * 110.99216 * 206.25676 * 20 19 18 23 23 C 1.47849 * 111.00090 * 180.23319 * 17 9 7 24 24 H 0.97002 * 120.00329 * 5.00775 * 1 2 3 25 25 H 1.08002 * 120.00319 * 0.02562 * 12 11 9 26 26 H 1.07997 * 119.99909 * 180.02562 * 13 12 11 27 27 H 1.07999 * 120.00320 * 179.97438 * 14 13 12 28 28 H 1.07997 * 119.99697 * 179.72518 * 15 14 13 29 29 H 1.08004 * 120.00232 * 180.24924 * 16 15 14 30 30 H 1.08997 * 109.89442 * 242.66652 * 18 17 9 31 31 H 1.09003 * 109.88904 * 3.85118 * 18 17 9 32 32 H 1.08996 * 110.70824 * 140.66959 * 19 18 17 33 33 H 1.09000 * 110.70505 * 263.90565 * 19 18 17 34 34 H 1.00898 * 110.99849 * 298.54331 * 22 20 19 35 35 H 1.00901 * 111.00589 * 62.50107 * 22 20 19 36 36 H 1.08999 * 110.36786 * 332.46131 * 23 17 9 37 37 H 1.08995 * 110.37594 * 94.80209 * 23 17 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0044 -1.1941 -0.0005 8 1 3.0809 -1.1961 -0.0885 9 6 1.2560 -2.4963 0.1217 10 1 0.3163 -2.3273 0.6474 11 6 0.9711 -3.0430 -1.2534 12 6 -0.3128 -2.9963 -1.7634 13 6 -0.5740 -3.4972 -3.0251 14 6 0.4486 -4.0454 -3.7765 15 6 1.7315 -4.0974 -3.2641 16 6 1.9937 -3.5916 -2.0046 17 7 2.0706 -3.4606 0.8729 18 6 2.3821 -2.9522 2.2213 19 6 1.8678 -3.9968 3.2340 20 6 1.8048 -5.2983 2.3920 21 1 2.7839 -5.7740 2.3347 22 7 0.8026 -6.2266 2.9322 23 6 1.3691 -4.7550 1.0083 24 1 -0.4851 0.8368 -0.0733 25 1 -1.1117 -2.5676 -1.1766 26 1 -1.5771 -3.4603 -3.4237 27 1 0.2445 -4.4372 -4.7620 28 1 2.5296 -4.5297 -3.8494 29 1 2.9967 -3.6286 -1.6059 30 1 3.4594 -2.8282 2.3313 31 1 1.8786 -1.9991 2.3837 32 1 2.5673 -4.1074 4.0626 33 1 0.8770 -3.7252 3.5983 34 1 1.0351 -6.5012 3.8748 35 1 -0.1221 -5.8250 2.8901 36 1 0.2896 -4.6060 0.9819 37 1 1.6781 -5.4387 0.2177 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000130861047.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:35:32 Heat of formation + Delta-G solvation = 28.143849 kcal Electronic energy + Delta-G solvation = -18208.366705 eV Core-core repulsion = 15563.907246 eV Total energy + Delta-G solvation = -2644.459460 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -38.95185 -37.67111 -34.29752 -32.38173 -30.84505 -29.91230 -28.49377 -27.52430 -25.40893 -23.07856 -21.57989 -20.63564 -20.23873 -19.37721 -16.44791 -16.27508 -15.75326 -15.28990 -14.57664 -14.35629 -13.94119 -13.67176 -12.98665 -12.88487 -12.74417 -12.48858 -12.16242 -11.76411 -11.67391 -11.42666 -11.14948 -11.00661 -10.68721 -10.63917 -10.34473 -10.16267 -9.97824 -9.79285 -9.33270 -8.63725 -8.48135 -7.95726 -7.60627 -7.22814 -6.14420 -4.18313 2.37846 2.40218 3.23081 3.31731 3.36461 4.31263 4.60924 4.80001 5.04266 5.18462 5.21123 5.40901 5.52268 5.72606 5.84046 5.89146 5.93158 5.97331 6.11117 6.33278 6.41266 6.51200 6.57912 6.60573 6.74079 6.77840 6.95513 7.01938 7.26902 7.28534 7.39838 7.43832 7.55576 7.75589 7.78883 7.83032 8.08915 8.16819 8.47184 8.94340 9.45746 10.91332 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.014207 B = 0.011071 C = 0.007108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1970.428435 B = 2528.605297 C = 3938.066265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.065 3.935 3 Si 0.895 3.105 4 H -0.270 1.270 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.496 4.496 8 H 0.066 0.934 9 C 0.232 3.768 10 H 0.036 0.964 11 C -0.022 4.022 12 C -0.113 4.113 13 C -0.132 4.132 14 C -0.153 4.153 15 C -0.137 4.137 16 C -0.102 4.102 17 N -0.524 5.524 18 C 0.062 3.938 19 C -0.179 4.179 20 C 0.080 3.920 21 H 0.090 0.910 22 N -0.841 5.841 23 C 0.053 3.947 24 H 0.263 0.737 25 H 0.115 0.885 26 H 0.105 0.895 27 H 0.103 0.897 28 H 0.105 0.895 29 H 0.118 0.882 30 H 0.062 0.938 31 H 0.067 0.933 32 H 0.063 0.937 33 H 0.058 0.942 34 H 0.336 0.664 35 H 0.339 0.661 36 H 0.037 0.963 37 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.839 -7.538 2.135 7.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.138 4.138 3 Si 0.723 3.277 4 H -0.195 1.195 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.534 4.534 8 H 0.084 0.916 9 C 0.126 3.874 10 H 0.054 0.946 11 C -0.023 4.023 12 C -0.131 4.131 13 C -0.150 4.150 14 C -0.171 4.171 15 C -0.155 4.155 16 C -0.121 4.121 17 N -0.249 5.249 18 C -0.066 4.066 19 C -0.220 4.220 20 C -0.032 4.032 21 H 0.108 0.892 22 N -0.369 5.369 23 C -0.076 4.076 24 H 0.073 0.927 25 H 0.134 0.866 26 H 0.123 0.877 27 H 0.121 0.879 28 H 0.123 0.877 29 H 0.136 0.864 30 H 0.081 0.919 31 H 0.085 0.915 32 H 0.081 0.919 33 H 0.077 0.923 34 H 0.148 0.852 35 H 0.151 0.849 36 H 0.056 0.944 37 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 1.360 -7.958 1.323 8.181 hybrid contribution -0.600 2.014 0.946 2.305 sum 0.759 -5.944 2.269 6.408 Atomic orbital electron populations 1.69905 1.05976 1.27188 1.49208 1.25013 0.94910 0.99417 0.94506 0.86477 0.80335 0.83331 0.77598 1.19472 1.20968 1.20977 1.20990 0.93799 0.88687 1.49946 0.91614 1.18658 0.93076 0.88861 0.86829 0.94583 1.20421 0.91651 0.91571 0.98640 1.21060 0.97281 0.99158 0.95627 1.20949 0.98146 1.00599 0.95352 1.20799 0.93696 1.03317 0.99274 1.20990 0.96169 1.01894 0.96433 1.20952 0.99522 0.98137 0.93448 1.63694 1.44212 1.02735 1.14297 1.22434 1.00295 0.97066 0.86850 1.23637 1.00936 0.98180 0.99209 1.22681 0.95747 0.90079 0.94721 0.89237 1.58824 1.05447 1.45460 1.27188 1.22920 0.96683 0.92790 0.95185 0.92717 0.86647 0.87729 0.87878 0.87699 0.86359 0.91934 0.91474 0.91869 0.92302 0.85167 0.84863 0.94449 0.90996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.32 12.86 55.43 0.71 -23.61 16 2 C 0.07 1.73 5.45 -17.82 -0.10 1.63 16 3 Si 0.89 20.85 29.54 -169.99 -5.02 15.83 16 4 H -0.27 -6.24 7.11 56.52 0.40 -5.83 16 5 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 6 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 7 C -0.50 -12.97 7.14 -34.44 -0.25 -13.21 16 8 H 0.07 1.76 7.82 -52.48 -0.41 1.35 16 9 C 0.23 5.53 1.32 -70.02 -0.09 5.44 16 10 H 0.04 0.97 7.17 -51.93 -0.37 0.60 16 11 C -0.02 -0.49 4.01 -104.63 -0.42 -0.91 16 12 C -0.11 -2.49 9.67 -39.58 -0.38 -2.88 16 13 C -0.13 -2.57 10.05 -39.58 -0.40 -2.96 16 14 C -0.15 -2.78 10.05 -39.58 -0.40 -3.18 16 15 C -0.14 -2.57 10.05 -39.58 -0.40 -2.97 16 16 C -0.10 -2.17 9.15 -39.58 -0.36 -2.53 16 17 N -0.52 -10.85 4.54 -226.08 -1.03 -11.87 16 18 C 0.06 1.19 6.28 -2.84 -0.02 1.17 16 19 C -0.18 -2.76 6.63 -24.91 -0.17 -2.93 16 20 C 0.08 1.21 4.21 -65.58 -0.28 0.94 16 21 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 22 N -0.84 -10.99 9.42 -2.86 -0.03 -11.02 16 23 C 0.05 0.97 5.43 -2.29 -0.01 0.96 16 24 H 0.26 6.94 8.32 -40.82 -0.34 6.60 16 25 H 0.12 2.66 7.99 -52.49 -0.42 2.24 16 26 H 0.10 1.76 8.06 -52.49 -0.42 1.34 16 27 H 0.10 1.57 8.06 -52.49 -0.42 1.15 16 28 H 0.10 1.68 8.06 -52.49 -0.42 1.26 16 29 H 0.12 2.51 7.93 -52.48 -0.42 2.09 16 30 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 31 H 0.07 1.46 7.02 -51.93 -0.36 1.10 16 32 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 34 H 0.34 3.64 9.07 -39.29 -0.36 3.29 16 35 H 0.34 4.34 8.83 -39.29 -0.35 4.00 16 36 H 0.04 0.73 7.59 -51.93 -0.39 0.33 16 37 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 LS Contribution 303.74 15.07 4.58 4.58 Total: -1.00 -27.28 303.74 -9.65 -36.93 By element: Atomic # 1 Polarization: 16.20 SS G_CDS: -5.60 Total: 10.60 kcal Atomic # 6 Polarization: -18.17 SS G_CDS: -3.26 Total: -21.43 kcal Atomic # 7 Polarization: -46.16 SS G_CDS: -0.34 Total: -46.50 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -27.28 -9.65 -36.93 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000130861047.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.074 kcal (2) G-P(sol) polarization free energy of solvation -27.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.931 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds