Wall clock time and date at job start Mon Mar 30 2020 03:35:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86796 * 119.99727 * 2 1 4 4 H 1.48503 * 109.47100 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47464 * 300.00111 * 3 2 1 6 6 H 1.48502 * 109.47234 * 60.00335 * 3 2 1 7 7 C 1.37875 * 119.99661 * 180.02562 * 2 1 3 8 8 H 1.08009 * 119.99408 * 174.60709 * 7 2 1 9 9 C 1.50696 * 120.00410 * 354.59912 * 7 2 1 10 10 H 1.08995 * 109.47312 * 333.74138 * 9 7 2 11 11 C 1.50697 * 109.47081 * 93.74534 * 9 7 2 12 12 C 1.38231 * 120.00039 * 253.23500 * 11 9 7 13 13 C 1.38240 * 120.00287 * 179.97438 * 12 11 9 14 14 C 1.38236 * 119.99856 * 0.02562 * 13 12 11 15 15 C 1.38239 * 119.99826 * 0.25481 * 14 13 12 16 16 C 1.38231 * 119.99850 * 359.49069 * 15 14 13 17 17 N 1.46897 * 109.47076 * 213.74485 * 9 7 2 18 18 C 1.47437 * 111.00464 * 59.38631 * 17 9 7 19 19 C 1.54320 * 107.23552 * 123.25556 * 18 17 9 20 20 C 1.55139 * 103.01929 * 22.28637 * 19 18 17 21 21 H 1.09003 * 110.98746 * 82.47540 * 20 19 18 22 22 N 1.46893 * 110.99216 * 206.25676 * 20 19 18 23 23 C 1.47849 * 111.00090 * 180.23319 * 17 9 7 24 24 H 0.97002 * 120.00329 * 5.00775 * 1 2 3 25 25 H 1.08002 * 120.00319 * 0.02562 * 12 11 9 26 26 H 1.07997 * 119.99909 * 180.02562 * 13 12 11 27 27 H 1.07999 * 120.00320 * 179.97438 * 14 13 12 28 28 H 1.07997 * 119.99697 * 179.72518 * 15 14 13 29 29 H 1.08004 * 120.00232 * 180.24924 * 16 15 14 30 30 H 1.08997 * 109.89442 * 242.66652 * 18 17 9 31 31 H 1.09003 * 109.88904 * 3.85118 * 18 17 9 32 32 H 1.08996 * 110.70824 * 140.66959 * 19 18 17 33 33 H 1.09000 * 110.70505 * 263.90565 * 19 18 17 34 34 H 1.00898 * 110.99849 * 298.54331 * 22 20 19 35 35 H 1.00901 * 111.00589 * 62.50107 * 22 20 19 36 36 H 1.08999 * 110.36786 * 332.46131 * 23 17 9 37 37 H 1.08995 * 110.37594 * 94.80209 * 23 17 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0044 -1.1941 -0.0005 8 1 3.0809 -1.1961 -0.0885 9 6 1.2560 -2.4963 0.1217 10 1 0.3163 -2.3273 0.6474 11 6 0.9711 -3.0430 -1.2534 12 6 -0.3128 -2.9963 -1.7634 13 6 -0.5740 -3.4972 -3.0251 14 6 0.4486 -4.0454 -3.7765 15 6 1.7315 -4.0974 -3.2641 16 6 1.9937 -3.5916 -2.0046 17 7 2.0706 -3.4606 0.8729 18 6 2.3821 -2.9522 2.2213 19 6 1.8678 -3.9968 3.2340 20 6 1.8048 -5.2983 2.3920 21 1 2.7839 -5.7740 2.3347 22 7 0.8026 -6.2266 2.9322 23 6 1.3691 -4.7550 1.0083 24 1 -0.4851 0.8368 -0.0733 25 1 -1.1117 -2.5676 -1.1766 26 1 -1.5771 -3.4603 -3.4237 27 1 0.2445 -4.4372 -4.7620 28 1 2.5296 -4.5297 -3.8494 29 1 2.9967 -3.6286 -1.6059 30 1 3.4594 -2.8282 2.3313 31 1 1.8786 -1.9991 2.3837 32 1 2.5673 -4.1074 4.0626 33 1 0.8770 -3.7252 3.5983 34 1 1.0351 -6.5012 3.8748 35 1 -0.1221 -5.8250 2.8901 36 1 0.2896 -4.6060 0.9819 37 1 1.6781 -5.4387 0.2177 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000130861047.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:35:32 Heat of formation + Delta-G solvation = 10.322633 kcal Electronic energy + Delta-G solvation = -18209.139491 eV Core-core repulsion = 15563.907246 eV Total energy + Delta-G solvation = -2645.232246 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.53807 -39.17520 -35.90694 -34.12732 -32.41825 -31.50033 -29.97531 -29.17394 -27.09755 -24.82913 -23.17342 -22.18336 -21.59058 -21.06434 -18.39250 -17.74076 -17.17417 -16.97660 -16.19752 -15.97133 -15.41385 -15.19726 -14.69700 -14.35396 -14.18555 -14.04874 -13.79246 -13.46276 -13.34143 -12.98954 -12.87193 -12.71472 -12.36485 -12.12109 -11.97261 -11.74786 -11.63003 -11.54489 -11.15784 -10.63744 -9.62380 -9.55082 -9.26496 -8.94598 -8.16064 -6.26750 0.76925 0.81591 1.35914 1.38573 1.49890 2.37091 3.00954 3.25627 3.38388 3.62877 3.82081 4.04596 4.17403 4.29601 4.33383 4.44259 4.47616 4.59465 4.64587 4.84111 4.89256 4.92439 4.98697 5.10964 5.15189 5.25409 5.35012 5.42244 5.47779 5.69192 5.81881 5.82236 6.05710 6.12769 6.16155 6.34050 6.46172 6.58408 6.70659 6.91581 7.40382 8.88299 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.014207 B = 0.011071 C = 0.007108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1970.428435 B = 2528.605297 C = 3938.066265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.018 3.982 3 Si 0.952 3.048 4 H -0.266 1.266 5 H -0.283 1.283 6 H -0.280 1.280 7 C -0.503 4.503 8 H 0.054 0.946 9 C 0.244 3.756 10 H -0.007 1.007 11 C -0.044 4.044 12 C -0.137 4.137 13 C -0.132 4.132 14 C -0.144 4.144 15 C -0.130 4.130 16 C -0.116 4.116 17 N -0.528 5.528 18 C 0.058 3.942 19 C -0.166 4.166 20 C 0.096 3.904 21 H 0.101 0.899 22 N -0.838 5.838 23 C 0.056 3.944 24 H 0.262 0.738 25 H 0.090 0.910 26 H 0.131 0.869 27 H 0.145 0.855 28 H 0.141 0.859 29 H 0.112 0.888 30 H 0.069 0.931 31 H 0.031 0.969 32 H 0.092 0.908 33 H 0.054 0.946 34 H 0.354 0.646 35 H 0.341 0.659 36 H 0.018 0.982 37 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.792 -8.998 1.339 9.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.182 4.182 3 Si 0.778 3.222 4 H -0.190 1.190 5 H -0.209 1.209 6 H -0.205 1.205 7 C -0.541 4.541 8 H 0.072 0.928 9 C 0.137 3.863 10 H 0.011 0.989 11 C -0.046 4.046 12 C -0.156 4.156 13 C -0.150 4.150 14 C -0.162 4.162 15 C -0.148 4.148 16 C -0.135 4.135 17 N -0.253 5.253 18 C -0.071 4.071 19 C -0.206 4.206 20 C -0.017 4.017 21 H 0.119 0.881 22 N -0.367 5.367 23 C -0.073 4.073 24 H 0.071 0.929 25 H 0.108 0.892 26 H 0.149 0.851 27 H 0.163 0.837 28 H 0.158 0.842 29 H 0.130 0.870 30 H 0.088 0.912 31 H 0.050 0.950 32 H 0.111 0.889 33 H 0.073 0.927 34 H 0.168 0.832 35 H 0.153 0.847 36 H 0.037 0.963 37 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 2.322 -9.439 0.547 9.735 hybrid contribution -0.910 2.380 1.154 2.798 sum 1.412 -7.058 1.701 7.396 Atomic orbital electron populations 1.70034 1.07142 1.27609 1.50544 1.25702 0.95626 1.02320 0.94536 0.85583 0.79307 0.79766 0.77521 1.18980 1.20883 1.20533 1.21143 0.93264 0.90140 1.49544 0.92757 1.18330 0.91071 0.89130 0.87753 0.98907 1.20352 0.92661 0.93290 0.98248 1.21025 0.96575 1.00873 0.97162 1.21262 1.00096 0.99530 0.94111 1.21259 0.92763 1.01577 1.00551 1.21380 0.97646 1.00401 0.95379 1.20977 0.98697 0.99049 0.94739 1.63620 1.43622 1.03015 1.15025 1.22455 1.00379 0.96736 0.87494 1.23557 1.01275 0.96782 0.98997 1.22496 0.96570 0.90183 0.92462 0.88132 1.58770 1.05033 1.44416 1.28512 1.22871 0.95330 0.91681 0.97403 0.92899 0.89152 0.85117 0.83703 0.84170 0.86973 0.91243 0.95048 0.88899 0.92694 0.83191 0.84661 0.96342 0.91362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.60 12.86 21.45 0.28 -52.32 16 2 C 0.02 1.01 5.45 84.65 0.46 1.47 16 3 Si 0.95 43.82 29.54 68.60 2.03 45.84 16 4 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 5 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 6 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 7 C -0.50 -27.38 7.14 25.60 0.18 -27.20 16 8 H 0.05 3.01 7.82 -2.91 -0.02 2.99 16 9 C 0.24 12.28 1.32 43.42 0.06 12.33 16 10 H -0.01 -0.40 7.17 -2.39 -0.02 -0.41 16 11 C -0.04 -2.09 4.01 -19.87 -0.08 -2.17 16 12 C -0.14 -6.28 9.67 22.27 0.22 -6.07 16 13 C -0.13 -4.94 10.05 22.27 0.22 -4.72 16 14 C -0.14 -4.75 10.05 22.27 0.22 -4.52 16 15 C -0.13 -4.55 10.05 22.27 0.22 -4.32 16 16 C -0.12 -4.90 9.15 22.27 0.20 -4.69 16 17 N -0.53 -22.56 4.54 -869.19 -3.95 -26.51 16 18 C 0.06 2.27 6.28 86.65 0.54 2.82 16 19 C -0.17 -4.94 6.63 31.78 0.21 -4.73 16 20 C 0.10 2.76 4.21 46.30 0.19 2.96 16 21 H 0.10 2.77 8.14 -2.39 -0.02 2.75 16 22 N -0.84 -20.31 9.42 -162.96 -1.53 -21.85 16 23 C 0.06 2.07 5.43 86.77 0.47 2.54 16 24 H 0.26 14.38 8.32 -92.71 -0.77 13.61 16 25 H 0.09 4.47 7.99 -2.91 -0.02 4.45 16 26 H 0.13 4.12 8.06 -2.91 -0.02 4.09 16 27 H 0.15 3.63 8.06 -2.91 -0.02 3.61 16 28 H 0.14 3.89 8.06 -2.91 -0.02 3.86 16 29 H 0.11 4.77 7.93 -2.91 -0.02 4.75 16 30 H 0.07 2.59 8.14 -2.39 -0.02 2.57 16 31 H 0.03 1.44 7.02 -2.39 -0.02 1.42 16 32 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 33 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 34 H 0.35 6.68 9.07 -89.70 -0.81 5.87 16 35 H 0.34 8.36 8.83 -89.69 -0.79 7.56 16 36 H 0.02 0.75 7.59 -2.39 -0.02 0.73 16 37 H 0.07 2.57 8.14 -2.39 -0.02 2.55 16 Total: -1.00 -61.48 303.74 -0.59 -62.07 By element: Atomic # 1 Polarization: 29.62 SS G_CDS: -0.54 Total: 29.07 kcal Atomic # 6 Polarization: -39.45 SS G_CDS: 3.13 Total: -36.31 kcal Atomic # 7 Polarization: -95.47 SS G_CDS: -5.21 Total: -100.68 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.84 kcal Total: -61.48 -0.59 -62.07 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000130861047.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.398 kcal (2) G-P(sol) polarization free energy of solvation -61.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.075 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds