Wall clock time and date at job start Mon Mar 30 2020 04:22:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86800 * 119.99648 * 2 1 4 4 H 1.48500 * 109.46923 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47075 * 299.99805 * 3 2 1 6 6 H 1.48499 * 109.47273 * 59.99553 * 3 2 1 7 7 C 1.38942 * 119.99899 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99640 * 179.97438 * 7 2 1 9 9 N 1.37092 * 120.00596 * 0.02562 * 7 2 1 10 10 C 1.34775 * 120.00092 * 180.02562 * 9 7 2 11 11 O 1.21292 * 120.00203 * 359.97438 * 10 9 7 12 12 C 1.50701 * 119.99835 * 179.97438 * 10 9 7 13 13 Br 1.96600 * 112.85160 * 321.19579 * 12 10 9 14 14 C 1.53782 * 113.61600 * 189.99753 * 12 10 9 15 15 C 1.53781 * 87.08260 * 219.93680 * 14 12 10 16 16 C 1.53786 * 87.17350 * 25.39213 * 15 14 12 17 17 H 0.97000 * 120.00675 * 0.02562 * 1 2 3 18 18 H 0.97003 * 119.99788 * 359.97438 * 9 7 2 19 19 H 1.09001 * 113.61250 * 105.38498 * 14 12 10 20 20 H 1.08996 * 113.68722 * 334.49812 * 14 12 10 21 21 H 1.09002 * 113.61445 * 139.98212 * 15 14 12 22 22 H 1.09002 * 113.61408 * 270.79943 * 15 14 12 23 23 H 1.08993 * 113.61491 * 89.15923 * 16 15 14 24 24 H 1.09000 * 113.61138 * 220.06261 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.7080 1.3465 0.0006 5 1 1.8892 2.3965 -1.2126 6 1 1.8891 2.3965 1.2124 7 6 2.0088 -1.2033 0.0005 8 1 3.0889 -1.2032 0.0001 9 7 1.3234 -2.3906 0.0005 10 6 1.9974 -3.5577 0.0016 11 8 3.2103 -3.5577 0.0021 12 6 1.2439 -4.8629 0.0022 13 35 -0.3609 -4.8175 1.1368 14 6 2.1376 -6.0900 0.2480 15 6 1.2989 -6.8160 -0.8172 16 6 0.9857 -5.4302 -1.4057 17 1 -0.4851 0.8400 -0.0004 18 1 0.3534 -2.3906 0.0005 19 1 2.0342 -6.5122 1.2475 20 1 3.1773 -5.9398 -0.0427 21 1 1.8886 -7.4489 -1.4804 22 1 0.4250 -7.3260 -0.4119 23 1 1.7096 -5.0980 -2.1498 24 1 -0.0462 -5.3205 -1.7391 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000135516262.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:22:35 Heat of formation + Delta-G solvation = -22.370135 kcal Electronic energy + Delta-G solvation = -11194.260309 eV Core-core repulsion = 8961.365012 eV Total energy + Delta-G solvation = -2232.895297 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 246.995 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -39.30440 -36.75820 -33.98040 -31.34349 -29.73616 -26.37798 -25.49133 -24.19803 -20.28222 -18.44147 -17.81686 -16.45091 -15.11451 -14.88856 -14.08610 -13.68818 -13.32132 -12.43504 -12.13730 -11.89049 -11.62341 -11.13260 -10.87108 -10.40767 -10.34364 -10.31747 -10.27664 -9.72325 -9.58136 -9.45368 -8.37353 -8.03667 -6.47419 -3.88057 1.89272 3.13050 3.24320 3.31465 3.73839 4.11416 4.66314 4.71915 4.79434 4.95095 5.31535 5.40405 5.83073 5.99117 6.03817 6.13515 6.17565 6.30379 6.53629 7.49330 7.97685 8.51651 9.08838 9.45901 9.95191 10.69091 Molecular weight = 246.99amu Principal moments of inertia in cm(-1) A = 0.039592 B = 0.009190 C = 0.007998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 707.038833 B = 3045.998852 C = 3499.911591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.026 3.974 3 Si 0.932 3.068 4 H -0.267 1.267 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.303 4.303 8 H 0.106 0.894 9 N -0.542 5.542 10 C 0.448 3.552 11 O -0.586 6.586 12 C -0.057 4.057 13 Br -0.133 7.133 14 C -0.106 4.106 15 C -0.143 4.143 16 C -0.114 4.114 17 H 0.273 0.727 18 H 0.398 0.602 19 H 0.075 0.925 20 H 0.108 0.892 21 H 0.074 0.926 22 H 0.084 0.916 23 H 0.098 0.902 24 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.765 -10.428 -0.268 10.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.177 4.177 3 Si 0.758 3.242 4 H -0.191 1.191 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.433 4.433 8 H 0.124 0.876 9 N -0.176 5.176 10 C 0.232 3.768 11 O -0.473 6.473 12 C -0.138 4.138 13 Br -0.053 7.053 14 C -0.144 4.144 15 C -0.180 4.180 16 C -0.153 4.153 17 H 0.083 0.917 18 H 0.233 0.767 19 H 0.094 0.906 20 H 0.126 0.874 21 H 0.092 0.908 22 H 0.103 0.897 23 H 0.116 0.884 24 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -2.658 -10.217 0.122 10.558 hybrid contribution -0.028 0.926 -0.156 0.940 sum -2.686 -9.291 -0.034 9.671 Atomic orbital electron populations 1.69644 1.06015 1.28357 1.48946 1.25338 0.95654 0.99913 0.96799 0.85772 0.79739 0.80848 0.77831 1.19089 1.20600 1.20572 1.19822 0.93499 0.82093 1.47892 0.87637 1.41939 1.09781 1.04409 1.61514 1.18998 0.87705 0.83799 0.86284 1.90524 1.12970 1.86254 1.57504 1.25795 0.91649 0.99142 0.97186 1.97314 1.39001 1.99251 1.69780 1.23012 0.99597 0.91882 0.99930 1.22927 1.00364 0.96275 0.98465 1.23115 1.03101 0.95390 0.93695 0.91651 0.76725 0.90612 0.87414 0.90777 0.89701 0.88380 0.90126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.37 13.05 55.50 0.72 -23.65 14 2 C 0.03 0.70 5.50 -17.47 -0.10 0.61 14 3 Si 0.93 20.93 29.55 -169.99 -5.02 15.91 14 4 H -0.27 -5.98 7.11 56.52 0.40 -5.57 14 5 H -0.28 -6.17 7.11 56.52 0.40 -5.76 14 6 H -0.28 -6.19 7.11 56.52 0.40 -5.79 14 7 C -0.30 -8.54 9.68 -14.94 -0.14 -8.69 14 8 H 0.11 3.08 7.16 -52.48 -0.38 2.71 14 9 N -0.54 -14.23 5.14 -10.96 -0.06 -14.28 14 10 C 0.45 10.92 7.01 -10.99 -0.08 10.84 14 11 O -0.59 -16.00 15.47 5.55 0.09 -15.92 14 12 C -0.06 -1.08 1.56 -90.86 -0.14 -1.22 14 13 Br -0.13 -2.36 32.18 -68.01 -2.19 -4.54 14 14 C -0.11 -1.69 7.11 -25.92 -0.18 -1.88 14 15 C -0.14 -1.86 7.85 -25.92 -0.20 -2.07 14 16 C -0.11 -1.79 7.29 -25.82 -0.19 -1.98 14 17 H 0.27 7.01 8.31 -40.82 -0.34 6.67 14 18 H 0.40 10.23 6.98 -40.82 -0.28 9.94 14 19 H 0.08 1.13 8.12 -51.93 -0.42 0.71 14 20 H 0.11 1.85 7.36 -51.93 -0.38 1.47 14 21 H 0.07 0.83 8.14 -51.93 -0.42 0.40 14 22 H 0.08 1.01 8.14 -51.93 -0.42 0.59 14 23 H 0.10 1.57 8.10 -51.93 -0.42 1.15 14 24 H 0.08 1.17 8.12 -51.93 -0.42 0.75 14 LS Contribution 233.12 15.07 3.51 3.51 Total: -1.00 -29.81 233.12 -6.27 -36.08 By element: Atomic # 1 Polarization: 9.55 SS G_CDS: -2.29 Total: 7.27 kcal Atomic # 6 Polarization: -3.34 SS G_CDS: -1.03 Total: -4.38 kcal Atomic # 7 Polarization: -38.60 SS G_CDS: 0.67 Total: -37.93 kcal Atomic # 8 Polarization: -16.00 SS G_CDS: 0.09 Total: -15.92 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Atomic # 35 Polarization: -2.36 SS G_CDS: -2.19 Total: -4.54 kcal Total LS contribution 3.51 Total: 3.51 kcal Total: -29.81 -6.27 -36.08 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000135516262.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.709 kcal (2) G-P(sol) polarization free energy of solvation -29.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.079 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds