Wall clock time and date at job start Mon Mar 30 2020 04:16:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46959 * 111.00243 * 2 1 4 4 C 1.53050 * 109.36653 * 183.19092 * 3 2 1 5 5 N 1.46959 * 109.36197 * 301.59645 * 4 3 2 6 6 C 1.38733 * 110.99743 * 183.19087 * 5 4 3 7 7 C 1.38753 * 120.29440 * 299.72372 * 6 5 4 8 8 C 1.38163 * 120.02567 * 179.75074 * 7 6 5 9 9 C 1.38901 * 120.62432 * 0.55103 * 8 7 6 10 10 C 1.36444 * 120.59789 * 359.70593 * 9 8 7 11 11 C 1.40728 * 119.95256 * 0.02562 * 10 9 8 12 12 C 1.41042 * 120.30859 * 180.02562 * 11 10 9 13 13 H 1.08005 * 120.00455 * 154.56263 * 12 11 10 14 14 C 1.39929 * 120.00056 * 334.56146 * 12 11 10 15 15 N 1.30883 * 119.99904 * 343.03391 * 14 12 11 16 16 Si 1.86796 * 119.99939 * 163.02558 * 14 12 11 17 17 H 1.48497 * 109.47302 * 60.00353 * 16 14 12 18 18 H 1.48508 * 109.47126 * 180.02562 * 16 14 12 19 19 H 1.48504 * 109.47478 * 300.00410 * 16 14 12 20 20 C 1.46957 * 110.88078 * 59.32421 * 5 4 3 21 21 C 1.46954 * 111.00428 * 123.80050 * 2 1 3 22 22 H 1.08996 * 109.47194 * 60.00054 * 1 2 3 23 23 H 1.09005 * 109.46934 * 180.02562 * 1 2 3 24 24 H 1.08997 * 109.46880 * 299.99425 * 1 2 3 25 25 H 1.09002 * 109.48436 * 63.21754 * 3 2 1 26 26 H 1.09005 * 109.50586 * 303.17182 * 3 2 1 27 27 H 1.09003 * 109.48541 * 181.63202 * 4 3 2 28 28 H 1.08995 * 109.50437 * 61.57588 * 4 3 2 29 29 H 1.08007 * 119.98325 * 0.02562 * 7 6 5 30 30 H 1.08001 * 119.68796 * 180.28213 * 8 7 6 31 31 H 1.08000 * 119.69594 * 179.72423 * 9 8 7 32 32 H 1.08001 * 120.02087 * 180.02562 * 10 9 8 33 33 H 0.96998 * 119.99707 * 179.97438 * 15 14 12 34 34 H 1.08998 * 109.48775 * 60.64269 * 20 5 4 35 35 H 1.08997 * 109.48941 * 180.70678 * 20 5 4 36 36 H 1.09000 * 109.49136 * 296.78208 * 21 2 1 37 37 H 1.09004 * 109.48570 * 56.84104 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9957 1.3720 0.0000 4 6 3.5235 1.3291 -0.0804 5 7 4.0501 0.5659 1.0597 6 6 5.4374 0.5659 1.0597 7 6 6.1374 0.0318 -0.0127 8 6 7.5190 0.0394 -0.0092 9 6 8.2210 0.5682 1.0663 10 6 7.5585 1.0952 2.1365 11 6 6.1514 1.1053 2.1563 12 6 5.4590 1.6487 3.2584 13 1 4.4581 2.0339 3.1309 14 6 6.0688 1.6887 4.5172 15 7 7.1176 0.9442 4.7603 16 14 5.3863 2.8047 5.8506 17 1 3.9816 2.4230 6.1445 18 1 6.2057 2.6642 7.0812 19 1 5.4293 4.2146 5.3862 20 6 3.5235 -0.8061 1.0597 21 6 1.9957 -0.7632 1.1400 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5137 0.8900 25 1 1.6937 1.8773 0.9174 26 1 1.6013 1.9132 -0.8600 27 1 3.9178 2.3449 -0.0513 28 1 3.8256 0.8481 -1.0107 29 1 5.6019 -0.3861 -0.8525 30 1 8.0582 -0.3737 -0.8489 31 1 9.3009 0.5624 1.0553 32 1 8.1137 1.5043 2.9676 33 1 7.5405 0.9723 5.6328 34 1 3.8254 -1.3115 0.1424 35 1 3.9179 -1.3470 1.9199 36 1 1.6938 -0.2821 2.0704 37 1 1.6013 -1.7790 1.1109 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000142465511.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:16:31 Heat of formation + Delta-G solvation = 36.967439 kcal Electronic energy + Delta-G solvation = -18159.179089 eV Core-core repulsion = 15515.102249 eV Total energy + Delta-G solvation = -2644.076840 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.19490 -37.24233 -34.51990 -33.52873 -30.44850 -29.73912 -29.15706 -26.83135 -24.93619 -23.27256 -23.04232 -21.13400 -20.11140 -18.90487 -17.22167 -16.11709 -15.23898 -14.79150 -14.61363 -14.42699 -14.27086 -13.91615 -13.86016 -12.92280 -12.65362 -12.27283 -12.15812 -11.82307 -11.76433 -11.47311 -11.10165 -11.00560 -10.81667 -10.79156 -10.49216 -10.40373 -10.31031 -9.75281 -9.44380 -9.12440 -8.13715 -7.38147 -7.35387 -7.27527 -6.70541 -4.25494 2.79863 2.96587 3.09100 3.12740 3.28109 3.97188 4.19090 4.67037 4.81365 5.26384 5.32857 5.52613 5.56852 5.69412 5.83010 5.84706 5.89659 5.91040 6.01549 6.19804 6.20361 6.41154 6.44454 6.48760 6.50545 6.64480 7.12266 7.20999 7.25838 7.26873 7.41318 7.49399 7.82640 7.91266 7.94404 8.14240 8.33630 8.49233 8.77756 8.95432 9.17895 10.22240 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.018813 B = 0.008760 C = 0.006525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1487.950786 B = 3195.581388 C = 4290.047792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.546 5.546 3 C 0.058 3.942 4 C 0.064 3.936 5 N -0.468 5.468 6 C -0.044 4.044 7 C -0.112 4.112 8 C -0.241 4.241 9 C -0.105 4.105 10 C -0.159 4.159 11 C 0.133 3.867 12 C -0.429 4.429 13 H 0.087 0.913 14 C 0.072 3.928 15 N -0.795 5.795 16 Si 0.907 3.093 17 H -0.266 1.266 18 H -0.280 1.280 19 H -0.265 1.265 20 C 0.068 3.932 21 C 0.058 3.942 22 H 0.063 0.937 23 H 0.063 0.937 24 H 0.023 0.977 25 H 0.041 0.959 26 H 0.070 0.930 27 H 0.074 0.926 28 H 0.033 0.967 29 H 0.084 0.916 30 H 0.083 0.917 31 H 0.085 0.915 32 H 0.118 0.882 33 H 0.280 0.720 34 H 0.032 0.968 35 H 0.077 0.923 36 H 0.042 0.958 37 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.757 -0.233 -4.178 8.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.271 5.271 3 C -0.070 4.070 4 C -0.064 4.064 5 N -0.188 5.188 6 C -0.139 4.139 7 C -0.132 4.132 8 C -0.261 4.261 9 C -0.124 4.124 10 C -0.179 4.179 11 C 0.129 3.871 12 C -0.458 4.458 13 H 0.105 0.895 14 C -0.146 4.146 15 N -0.421 5.421 16 Si 0.732 3.268 17 H -0.191 1.191 18 H -0.205 1.205 19 H -0.189 1.189 20 C -0.059 4.059 21 C -0.070 4.070 22 H 0.082 0.918 23 H 0.082 0.918 24 H 0.041 0.959 25 H 0.059 0.941 26 H 0.088 0.912 27 H 0.093 0.907 28 H 0.051 0.949 29 H 0.102 0.898 30 H 0.101 0.899 31 H 0.103 0.897 32 H 0.136 0.864 33 H 0.090 0.910 34 H 0.050 0.950 35 H 0.095 0.905 36 H 0.060 0.940 37 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -7.621 -0.300 -3.961 8.594 hybrid contribution -0.213 0.329 0.621 0.734 sum -7.834 0.029 -3.341 8.516 Atomic orbital electron populations 1.22316 0.88067 1.01547 1.00269 1.62173 1.07051 1.14468 1.43425 1.22195 0.95703 0.88754 1.00321 1.22144 0.92654 0.99024 0.92561 1.59050 1.06981 1.12087 1.40708 1.18407 0.86275 1.10768 0.98439 1.20993 0.94591 1.00327 0.97295 1.20174 0.93565 1.12526 0.99884 1.20434 0.97354 0.99851 0.94740 1.21050 0.94549 1.04321 0.97964 1.17439 0.91070 0.87742 0.90833 1.19493 1.01650 1.32943 0.91707 0.89537 1.26004 0.94176 0.94249 1.00141 1.69856 1.18143 1.30647 1.23441 0.86381 0.79776 0.81375 0.79242 1.19055 1.20544 1.18920 1.22100 0.92468 0.90779 1.00587 1.22209 0.95781 0.97438 0.91585 0.91788 0.91779 0.95867 0.94100 0.91161 0.90749 0.94916 0.89829 0.89869 0.89661 0.86374 0.90957 0.95021 0.90464 0.94020 0.91129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 9.60 60.06 0.58 0.90 16 2 N -0.55 -8.38 4.97 -242.75 -1.21 -9.58 16 3 C 0.06 0.92 5.62 -3.77 -0.02 0.90 16 4 C 0.06 1.19 5.31 -3.77 -0.02 1.17 16 5 N -0.47 -10.02 3.88 -170.46 -0.66 -10.69 16 6 C -0.04 -1.06 4.73 -83.29 -0.39 -1.45 16 7 C -0.11 -2.58 8.62 -39.42 -0.34 -2.92 16 8 C -0.24 -5.55 10.03 -39.36 -0.40 -5.94 16 9 C -0.11 -2.51 9.96 -39.98 -0.40 -2.90 16 10 C -0.16 -4.13 8.63 -39.29 -0.34 -4.47 16 11 C 0.13 3.51 5.58 -106.64 -0.60 2.91 16 12 C -0.43 -11.27 8.68 -37.89 -0.33 -11.60 16 13 H 0.09 2.27 7.60 -52.48 -0.40 1.87 16 14 C 0.07 1.79 5.15 -17.32 -0.09 1.70 16 15 N -0.80 -20.46 10.97 55.55 0.61 -19.86 16 16 Si 0.91 18.84 29.59 -169.99 -5.03 13.81 16 17 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 18 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 19 H -0.26 -5.45 7.11 56.52 0.40 -5.05 16 20 C 0.07 1.32 5.35 -3.77 -0.02 1.29 16 21 C 0.06 0.94 5.62 -3.77 -0.02 0.92 16 22 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 23 H 0.06 0.69 8.13 -51.93 -0.42 0.27 16 24 H 0.02 0.27 8.14 -51.93 -0.42 -0.15 16 25 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 26 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 27 H 0.07 1.41 8.13 -51.93 -0.42 0.99 16 28 H 0.03 0.62 7.25 -51.93 -0.38 0.24 16 29 H 0.08 1.79 7.05 -52.48 -0.37 1.42 16 30 H 0.08 1.72 8.06 -52.49 -0.42 1.29 16 31 H 0.09 1.82 8.06 -52.49 -0.42 1.40 16 32 H 0.12 3.15 6.19 -52.49 -0.32 2.83 16 33 H 0.28 6.59 8.30 -40.82 -0.34 6.25 16 34 H 0.03 0.62 7.42 -51.93 -0.39 0.23 16 35 H 0.08 1.58 8.13 -51.93 -0.42 1.16 16 36 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.07 1.00 8.13 -51.93 -0.42 0.58 16 LS Contribution 296.77 15.07 4.47 4.47 Total: -1.00 -27.19 296.77 -9.84 -37.03 By element: Atomic # 1 Polarization: 9.94 SS G_CDS: -5.64 Total: 4.30 kcal Atomic # 6 Polarization: -17.11 SS G_CDS: -2.39 Total: -19.49 kcal Atomic # 7 Polarization: -38.86 SS G_CDS: -1.26 Total: -40.12 kcal Atomic # 14 Polarization: 18.84 SS G_CDS: -5.03 Total: 13.81 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -27.19 -9.84 -37.03 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000142465511.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.995 kcal (2) G-P(sol) polarization free energy of solvation -27.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.028 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds