Wall clock time and date at job start Mon Mar 30 2020 04:16:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46959 * 111.00243 * 2 1 4 4 C 1.53050 * 109.36653 * 183.19092 * 3 2 1 5 5 N 1.46959 * 109.36197 * 301.59645 * 4 3 2 6 6 C 1.38733 * 110.99743 * 183.19087 * 5 4 3 7 7 C 1.38753 * 120.29440 * 299.72372 * 6 5 4 8 8 C 1.38163 * 120.02567 * 179.75074 * 7 6 5 9 9 C 1.38901 * 120.62432 * 0.55103 * 8 7 6 10 10 C 1.36444 * 120.59789 * 359.70593 * 9 8 7 11 11 C 1.40728 * 119.95256 * 0.02562 * 10 9 8 12 12 C 1.41042 * 120.30859 * 180.02562 * 11 10 9 13 13 H 1.08005 * 120.00455 * 154.56263 * 12 11 10 14 14 C 1.39929 * 120.00056 * 334.56146 * 12 11 10 15 15 N 1.30883 * 119.99904 * 343.03391 * 14 12 11 16 16 Si 1.86796 * 119.99939 * 163.02558 * 14 12 11 17 17 H 1.48497 * 109.47302 * 60.00353 * 16 14 12 18 18 H 1.48508 * 109.47126 * 180.02562 * 16 14 12 19 19 H 1.48504 * 109.47478 * 300.00410 * 16 14 12 20 20 C 1.46957 * 110.88078 * 59.32421 * 5 4 3 21 21 C 1.46954 * 111.00428 * 123.80050 * 2 1 3 22 22 H 1.08996 * 109.47194 * 60.00054 * 1 2 3 23 23 H 1.09005 * 109.46934 * 180.02562 * 1 2 3 24 24 H 1.08997 * 109.46880 * 299.99425 * 1 2 3 25 25 H 1.09002 * 109.48436 * 63.21754 * 3 2 1 26 26 H 1.09005 * 109.50586 * 303.17182 * 3 2 1 27 27 H 1.09003 * 109.48541 * 181.63202 * 4 3 2 28 28 H 1.08995 * 109.50437 * 61.57588 * 4 3 2 29 29 H 1.08007 * 119.98325 * 0.02562 * 7 6 5 30 30 H 1.08001 * 119.68796 * 180.28213 * 8 7 6 31 31 H 1.08000 * 119.69594 * 179.72423 * 9 8 7 32 32 H 1.08001 * 120.02087 * 180.02562 * 10 9 8 33 33 H 0.96998 * 119.99707 * 179.97438 * 15 14 12 34 34 H 1.08998 * 109.48775 * 60.64269 * 20 5 4 35 35 H 1.08997 * 109.48941 * 180.70678 * 20 5 4 36 36 H 1.09000 * 109.49136 * 296.78208 * 21 2 1 37 37 H 1.09004 * 109.48570 * 56.84104 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9957 1.3720 0.0000 4 6 3.5235 1.3291 -0.0804 5 7 4.0501 0.5659 1.0597 6 6 5.4374 0.5659 1.0597 7 6 6.1374 0.0318 -0.0127 8 6 7.5190 0.0394 -0.0092 9 6 8.2210 0.5682 1.0663 10 6 7.5585 1.0952 2.1365 11 6 6.1514 1.1053 2.1563 12 6 5.4590 1.6487 3.2584 13 1 4.4581 2.0339 3.1309 14 6 6.0688 1.6887 4.5172 15 7 7.1176 0.9442 4.7603 16 14 5.3863 2.8047 5.8506 17 1 3.9816 2.4230 6.1445 18 1 6.2057 2.6642 7.0812 19 1 5.4293 4.2146 5.3862 20 6 3.5235 -0.8061 1.0597 21 6 1.9957 -0.7632 1.1400 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5137 0.8900 25 1 1.6937 1.8773 0.9174 26 1 1.6013 1.9132 -0.8600 27 1 3.9178 2.3449 -0.0513 28 1 3.8256 0.8481 -1.0107 29 1 5.6019 -0.3861 -0.8525 30 1 8.0582 -0.3737 -0.8489 31 1 9.3009 0.5624 1.0553 32 1 8.1137 1.5043 2.9676 33 1 7.5405 0.9723 5.6328 34 1 3.8254 -1.3115 0.1424 35 1 3.9179 -1.3470 1.9199 36 1 1.6938 -0.2821 2.0704 37 1 1.6013 -1.7790 1.1109 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000142465511.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:16:30 Heat of formation + Delta-G solvation = 21.059325 kcal Electronic energy + Delta-G solvation = -18159.868916 eV Core-core repulsion = 15515.102249 eV Total energy + Delta-G solvation = -2644.766668 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.77546 -38.86268 -36.07914 -35.38696 -31.85001 -31.58902 -30.81587 -28.35546 -26.73725 -24.63581 -24.44974 -22.94835 -21.84172 -20.43686 -19.12872 -17.75779 -17.00299 -16.16915 -16.03370 -15.81728 -15.78114 -15.59709 -15.42812 -14.58898 -14.41052 -13.93480 -13.44246 -13.38085 -13.16007 -12.95843 -12.78931 -12.67795 -12.42966 -12.22243 -12.16371 -11.95542 -11.80495 -11.59498 -11.23562 -11.00283 -9.34941 -9.30202 -9.16297 -9.00652 -8.56903 -6.22119 0.96556 1.08048 1.38859 1.49351 1.56006 2.23243 2.77835 3.00188 3.24553 3.72108 4.00485 4.14362 4.24947 4.36225 4.41716 4.44853 4.59201 4.63113 4.65778 4.71347 4.79085 4.84648 4.96453 4.99125 5.02468 5.08781 5.22405 5.32541 5.53061 5.58848 5.91806 6.01070 6.05142 6.13848 6.21344 6.37972 6.43059 6.58487 6.86947 7.02191 7.29989 8.37212 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.018813 B = 0.008760 C = 0.006525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1487.950786 B = 3195.581388 C = 4290.047792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.553 5.553 3 C 0.066 3.934 4 C 0.066 3.934 5 N -0.486 5.486 6 C -0.042 4.042 7 C -0.119 4.119 8 C -0.239 4.239 9 C -0.111 4.111 10 C -0.184 4.184 11 C 0.099 3.901 12 C -0.457 4.457 13 H 0.077 0.923 14 C 0.033 3.967 15 N -0.827 5.827 16 Si 0.977 3.023 17 H -0.263 1.263 18 H -0.269 1.269 19 H -0.262 1.262 20 C 0.071 3.929 21 C 0.067 3.933 22 H 0.081 0.919 23 H 0.079 0.921 24 H 0.024 0.976 25 H 0.031 0.969 26 H 0.098 0.902 27 H 0.063 0.937 28 H 0.032 0.968 29 H 0.101 0.899 30 H 0.112 0.888 31 H 0.108 0.892 32 H 0.102 0.898 33 H 0.286 0.714 34 H 0.030 0.970 35 H 0.055 0.945 36 H 0.030 0.970 37 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.232 -0.338 -5.024 10.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.278 5.278 3 C -0.062 4.062 4 C -0.061 4.061 5 N -0.206 5.206 6 C -0.137 4.137 7 C -0.139 4.139 8 C -0.259 4.259 9 C -0.129 4.129 10 C -0.204 4.204 11 C 0.096 3.904 12 C -0.486 4.486 13 H 0.095 0.905 14 C -0.181 4.181 15 N -0.453 5.453 16 Si 0.798 3.202 17 H -0.188 1.188 18 H -0.193 1.193 19 H -0.186 1.186 20 C -0.056 4.056 21 C -0.061 4.061 22 H 0.100 0.900 23 H 0.097 0.903 24 H 0.043 0.957 25 H 0.049 0.951 26 H 0.116 0.884 27 H 0.081 0.919 28 H 0.050 0.950 29 H 0.119 0.881 30 H 0.130 0.870 31 H 0.126 0.874 32 H 0.120 0.880 33 H 0.097 0.903 34 H 0.049 0.951 35 H 0.073 0.927 36 H 0.048 0.952 37 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -9.104 -0.413 -4.826 10.313 hybrid contribution 0.255 0.295 0.760 0.855 sum -8.849 -0.118 -4.066 9.739 Atomic orbital electron populations 1.22406 0.85579 1.02918 1.01173 1.62189 1.09236 1.13775 1.42589 1.22130 0.93465 0.89522 1.01099 1.22143 0.94801 0.97846 0.91338 1.59023 1.05723 1.13525 1.42374 1.18635 0.87837 1.09409 0.97860 1.21226 0.94956 1.00161 0.97532 1.20544 0.93781 1.11333 1.00232 1.20699 0.98680 0.99225 0.94306 1.21033 0.94710 1.06019 0.98601 1.17827 0.91733 0.88838 0.92036 1.19560 1.01621 1.34644 0.92797 0.90535 1.26759 0.94374 0.95102 1.01908 1.69907 1.19309 1.31706 1.24365 0.85334 0.79104 0.79164 0.76572 1.18768 1.19340 1.18622 1.22056 0.94764 0.89379 0.99433 1.22105 0.93383 0.99015 0.91622 0.90033 0.90257 0.95744 0.95063 0.88368 0.91869 0.95016 0.88052 0.86978 0.87390 0.87976 0.90334 0.95134 0.92686 0.95165 0.88623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.56 9.60 127.69 1.23 1.78 16 2 N -0.55 -15.55 4.97 -921.94 -4.58 -20.13 16 3 C 0.07 1.96 5.62 86.31 0.49 2.45 16 4 C 0.07 2.42 5.31 86.31 0.46 2.88 16 5 N -0.49 -20.96 3.88 -693.20 -2.69 -23.65 16 6 C -0.04 -2.06 4.73 38.99 0.18 -1.88 16 7 C -0.12 -5.39 8.62 22.38 0.19 -5.20 16 8 C -0.24 -10.69 10.03 22.41 0.22 -10.46 16 9 C -0.11 -5.26 9.96 22.01 0.22 -5.04 16 10 C -0.18 -9.82 8.63 22.46 0.19 -9.63 16 11 C 0.10 5.40 5.58 -21.17 -0.12 5.28 16 12 C -0.46 -24.87 8.68 23.37 0.20 -24.67 16 13 H 0.08 4.17 7.60 -2.91 -0.02 4.15 16 14 C 0.03 1.68 5.15 85.24 0.44 2.12 16 15 N -0.83 -43.71 10.97 21.83 0.24 -43.47 16 16 Si 0.98 39.18 29.59 68.60 2.03 41.21 16 17 H -0.26 -10.35 7.11 99.48 0.71 -9.64 16 18 H -0.27 -10.19 7.11 99.48 0.71 -9.48 16 19 H -0.26 -10.29 7.11 99.48 0.71 -9.58 16 20 C 0.07 2.73 5.35 86.31 0.46 3.19 16 21 C 0.07 2.07 5.62 86.31 0.49 2.55 16 22 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 23 H 0.08 1.42 8.13 -2.38 -0.02 1.40 16 24 H 0.02 0.51 8.14 -2.39 -0.02 0.49 16 25 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 26 H 0.10 2.38 8.14 -2.38 -0.02 2.36 16 27 H 0.06 2.41 8.13 -2.39 -0.02 2.39 16 28 H 0.03 1.16 7.25 -2.39 -0.02 1.14 16 29 H 0.10 4.19 7.05 -2.91 -0.02 4.17 16 30 H 0.11 4.32 8.06 -2.91 -0.02 4.30 16 31 H 0.11 4.52 8.06 -2.91 -0.02 4.49 16 32 H 0.10 5.68 6.19 -2.91 -0.02 5.67 16 33 H 0.29 13.76 8.30 -92.71 -0.77 13.00 16 34 H 0.03 1.17 7.42 -2.39 -0.02 1.15 16 35 H 0.05 2.31 8.13 -2.39 -0.02 2.29 16 36 H 0.03 1.00 8.14 -2.39 -0.02 0.98 16 37 H 0.10 2.47 8.13 -2.38 -0.02 2.45 16 Total: -1.00 -59.25 296.77 0.69 -58.56 By element: Atomic # 1 Polarization: 23.07 SS G_CDS: 1.03 Total: 24.11 kcal Atomic # 6 Polarization: -41.28 SS G_CDS: 4.66 Total: -36.62 kcal Atomic # 7 Polarization: -80.22 SS G_CDS: -7.03 Total: -87.25 kcal Atomic # 14 Polarization: 39.18 SS G_CDS: 2.03 Total: 41.21 kcal Total: -59.25 0.69 -58.56 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000142465511.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.617 kcal (2) G-P(sol) polarization free energy of solvation -59.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.557 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds