Wall clock time and date at job start Mon Mar 30 2020 03:39:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86797 * 120.00287 * 2 1 4 4 H 1.48493 * 109.47054 * 275.00512 * 3 2 1 5 5 H 1.48502 * 109.46925 * 35.00311 * 3 2 1 6 6 H 1.48497 * 109.47381 * 155.00325 * 3 2 1 7 7 C 1.37876 * 119.99662 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00269 * 4.90407 * 7 2 1 9 9 C 1.50702 * 119.99882 * 184.90651 * 7 2 1 10 10 H 1.09002 * 109.50386 * 324.71212 * 9 7 2 11 11 C 1.53052 * 109.49212 * 84.76709 * 9 7 2 12 12 N 1.46953 * 109.36267 * 178.36954 * 11 9 7 13 13 C 1.46961 * 110.90181 * 300.68731 * 12 11 9 14 14 C 1.53058 * 109.35939 * 59.29197 * 13 12 11 15 15 N 1.46959 * 109.48742 * 204.66215 * 9 7 2 16 16 C 1.46894 * 111.00215 * 56.84411 * 15 9 7 17 17 C 1.50697 * 109.47446 * 57.75081 * 16 15 9 18 18 C 1.38235 * 120.00130 * 269.72835 * 17 16 15 19 19 C 1.38236 * 119.99891 * 179.74476 * 18 17 16 20 20 C 1.38232 * 119.99658 * 0.52922 * 19 18 17 21 21 C 1.38230 * 120.00438 * 359.74531 * 20 19 18 22 22 C 1.38231 * 120.00092 * 359.97438 * 21 20 19 23 23 H 0.97006 * 120.00316 * 0.02562 * 1 2 3 24 24 H 1.08994 * 109.48771 * 298.33967 * 11 9 7 25 25 H 1.09002 * 109.48436 * 58.40174 * 11 9 7 26 26 H 1.00901 * 110.99637 * 176.81460 * 12 11 9 27 27 H 1.09003 * 109.47238 * 299.33961 * 13 12 11 28 28 H 1.08997 * 109.50743 * 179.26884 * 13 12 11 29 29 H 1.08994 * 109.48423 * 181.65641 * 14 13 12 30 30 H 1.09001 * 109.48611 * 61.60941 * 14 13 12 31 31 H 1.09006 * 109.47033 * 177.75557 * 16 15 9 32 32 H 1.09007 * 109.47030 * 297.74796 * 16 15 9 33 33 H 1.08001 * 119.99894 * 359.97438 * 18 17 16 34 34 H 1.07994 * 120.00120 * 180.29490 * 19 18 17 35 35 H 1.08003 * 119.99614 * 179.77339 * 20 19 18 36 36 H 1.08005 * 120.00490 * 180.02562 * 21 20 19 37 37 H 1.08002 * 120.00636 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.3909 2.1074 -1.3947 5 1 1.5035 2.6198 0.8031 6 1 3.5956 1.4119 0.5916 7 6 2.0044 -1.1941 0.0005 8 1 1.4673 -2.1277 -0.0790 9 6 3.5073 -1.1965 0.1122 10 1 3.9129 -0.3340 -0.4168 11 6 3.9099 -1.1266 1.5871 12 7 5.3749 -1.1685 1.6947 13 6 5.9091 -2.4025 1.1018 14 6 5.5060 -2.4726 -0.3731 15 7 4.0410 -2.4307 -0.4808 16 6 3.6117 -2.5717 -1.8785 17 6 4.0636 -1.3694 -2.6666 18 6 3.2408 -0.2637 -2.7732 19 6 3.6575 0.8413 -3.4918 20 6 4.8925 0.8362 -4.1128 21 6 5.7129 -0.2716 -4.0109 22 6 5.2986 -1.3743 -3.2875 23 1 -0.4851 0.8401 -0.0004 24 1 3.5398 -0.1981 2.0215 25 1 3.4816 -1.9746 2.1215 26 1 5.6698 -1.0717 2.6548 27 1 5.5038 -3.2650 1.6309 28 1 6.9961 -2.4040 1.1821 29 1 5.8761 -3.4012 -0.8074 30 1 5.9344 -1.6248 -0.9078 31 1 4.0529 -3.4726 -2.3050 32 1 2.5248 -2.6453 -1.9191 33 1 2.2739 -0.2617 -2.2921 34 1 3.0167 1.7069 -3.5711 35 1 5.2166 1.6981 -4.6772 36 1 6.6780 -0.2754 -4.4957 37 1 5.9394 -2.2401 -3.2082 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000165626560.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:39:58 Heat of formation + Delta-G solvation = 41.001317 kcal Electronic energy + Delta-G solvation = -18869.144201 eV Core-core repulsion = 16225.242283 eV Total energy + Delta-G solvation = -2643.901918 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.41786 -37.61673 -34.13138 -32.89470 -30.56076 -30.39852 -30.06544 -26.76441 -24.95195 -23.00587 -22.14028 -21.50154 -20.61981 -18.61823 -17.09232 -16.14007 -15.95450 -14.79715 -14.70352 -14.35461 -14.03024 -13.90062 -13.67109 -13.25502 -12.94693 -12.82806 -12.45996 -11.98712 -11.81605 -11.45152 -11.05234 -10.88952 -10.64231 -10.50214 -10.40270 -10.13409 -10.02809 -9.68000 -9.20608 -8.62751 -8.33149 -8.16161 -7.87783 -7.32094 -6.14872 -4.14211 1.85500 1.93724 3.25098 3.36645 3.46689 4.29379 4.37680 4.82518 4.89346 5.20767 5.31881 5.38052 5.46924 5.59970 5.66146 5.76014 5.86787 5.97711 6.05346 6.17764 6.23668 6.35805 6.42806 6.48038 6.54045 6.62880 6.70079 6.87609 6.91351 7.09406 7.19684 7.29813 7.38892 7.57913 7.72255 7.87776 7.95121 8.10760 8.61983 8.95457 9.48330 10.96530 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.016081 B = 0.014105 C = 0.009504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1740.723485 B = 1984.676340 C = 2945.390829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.078 3.922 3 Si 0.849 3.151 4 H -0.267 1.267 5 H -0.291 1.291 6 H -0.253 1.253 7 C -0.504 4.504 8 H 0.082 0.918 9 C 0.185 3.815 10 H 0.021 0.979 11 C 0.064 3.936 12 N -0.700 5.700 13 C 0.064 3.936 14 C 0.049 3.951 15 N -0.519 5.519 16 C 0.103 3.897 17 C -0.103 4.103 18 C -0.092 4.092 19 C -0.129 4.129 20 C -0.131 4.131 21 C -0.134 4.134 22 C -0.119 4.119 23 H 0.264 0.736 24 H 0.065 0.935 25 H 0.032 0.968 26 H 0.327 0.673 27 H 0.031 0.969 28 H 0.064 0.936 29 H 0.063 0.937 30 H 0.038 0.962 31 H 0.062 0.938 32 H 0.097 0.903 33 H 0.147 0.853 34 H 0.114 0.886 35 H 0.111 0.889 36 H 0.112 0.888 37 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.502 -1.610 -4.029 11.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.125 4.125 3 Si 0.676 3.324 4 H -0.193 1.193 5 H -0.218 1.218 6 H -0.177 1.177 7 C -0.543 4.543 8 H 0.100 0.900 9 C 0.078 3.922 10 H 0.039 0.961 11 C -0.065 4.065 12 N -0.331 5.331 13 C -0.065 4.065 14 C -0.080 4.080 15 N -0.241 5.241 16 C -0.025 4.025 17 C -0.105 4.105 18 C -0.111 4.111 19 C -0.147 4.147 20 C -0.149 4.149 21 C -0.152 4.152 22 C -0.137 4.137 23 H 0.074 0.926 24 H 0.083 0.917 25 H 0.050 0.950 26 H 0.144 0.856 27 H 0.049 0.951 28 H 0.082 0.918 29 H 0.081 0.919 30 H 0.056 0.944 31 H 0.080 0.920 32 H 0.116 0.884 33 H 0.165 0.835 34 H 0.132 0.868 35 H 0.129 0.871 36 H 0.130 0.870 37 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 10.238 -1.542 -4.302 11.211 hybrid contribution 0.519 1.175 0.333 1.327 sum 10.757 -0.366 -3.969 11.471 Atomic orbital electron populations 1.69898 1.06113 1.26962 1.50031 1.24911 0.94567 0.98507 0.94499 0.87330 0.81439 0.84396 0.79258 1.19280 1.21770 1.17688 1.20892 0.88452 0.94650 1.50307 0.90040 1.19795 0.95490 0.87038 0.89889 0.96113 1.22469 0.84134 0.99826 1.00045 1.60682 1.12863 1.37190 1.22316 1.21879 0.98039 0.91175 0.95453 1.22173 0.90485 0.99793 0.95579 1.62562 1.07079 1.39864 1.14645 1.21109 1.02508 0.92464 0.86384 1.20780 0.94270 0.98232 0.97247 1.21722 1.01384 0.92215 0.95755 1.21250 0.96500 0.98683 0.98295 1.21016 0.95026 0.98101 1.00799 1.20954 0.99346 0.94229 1.00657 1.21020 0.96243 0.98221 0.98245 0.92553 0.91696 0.95000 0.85638 0.95062 0.91768 0.91872 0.94391 0.91994 0.88439 0.83548 0.86814 0.87053 0.87005 0.86947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.86 13.96 55.43 0.77 -25.09 16 2 C 0.08 2.12 4.60 -17.82 -0.08 2.03 16 3 Si 0.85 20.81 24.30 -169.99 -4.13 16.68 16 4 H -0.27 -6.29 6.19 56.52 0.35 -5.94 16 5 H -0.29 -7.24 7.11 56.52 0.40 -6.83 16 6 H -0.25 -6.25 5.82 56.52 0.33 -5.92 16 7 C -0.50 -13.27 6.40 -34.44 -0.22 -13.49 16 8 H 0.08 2.37 7.75 -52.49 -0.41 1.97 16 9 C 0.19 4.31 0.87 -68.80 -0.06 4.25 16 10 H 0.02 0.53 3.94 -51.93 -0.20 0.32 16 11 C 0.06 1.42 5.65 -3.77 -0.02 1.39 16 12 N -0.70 -13.13 6.90 -113.63 -0.78 -13.91 16 13 C 0.06 1.08 6.72 -3.76 -0.03 1.05 16 14 C 0.05 0.86 5.06 -3.76 -0.02 0.85 16 15 N -0.52 -10.71 4.73 -229.31 -1.08 -11.79 16 16 C 0.10 1.99 5.21 -4.98 -0.03 1.96 16 17 C -0.10 -1.98 4.01 -104.62 -0.42 -2.40 16 18 C -0.09 -1.92 6.56 -39.58 -0.26 -2.18 16 19 C -0.13 -2.44 9.50 -39.58 -0.38 -2.82 16 20 C -0.13 -2.15 10.05 -39.59 -0.40 -2.55 16 21 C -0.13 -2.10 10.05 -39.59 -0.40 -2.49 16 22 C -0.12 -1.98 8.05 -39.58 -0.32 -2.30 16 23 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 24 H 0.06 1.49 6.65 -51.93 -0.35 1.14 16 25 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.33 5.23 8.90 -39.29 -0.35 4.88 16 27 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 29 H 0.06 0.97 8.11 -51.93 -0.42 0.55 16 30 H 0.04 0.72 6.38 -51.93 -0.33 0.39 16 31 H 0.06 1.03 8.04 -51.93 -0.42 0.61 16 32 H 0.10 2.07 6.84 -51.93 -0.36 1.72 16 33 H 0.15 3.44 4.92 -52.49 -0.26 3.19 16 34 H 0.11 2.05 7.77 -52.49 -0.41 1.65 16 35 H 0.11 1.51 8.06 -52.48 -0.42 1.09 16 36 H 0.11 1.42 8.06 -52.48 -0.42 1.00 16 37 H 0.11 1.63 8.03 -52.49 -0.42 1.21 16 LS Contribution 277.91 15.07 4.19 4.19 Total: -1.00 -28.84 277.91 -8.95 -37.79 By element: Atomic # 1 Polarization: 14.13 SS G_CDS: -5.29 Total: 8.84 kcal Atomic # 6 Polarization: -14.07 SS G_CDS: -2.62 Total: -16.69 kcal Atomic # 7 Polarization: -49.70 SS G_CDS: -1.09 Total: -50.79 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -4.13 Total: 16.68 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -28.84 -8.95 -37.79 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000165626560.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.789 kcal (2) G-P(sol) polarization free energy of solvation -28.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.788 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds