Wall clock time and date at job start Mon Mar 30 2020 03:40:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86793 * 120.00240 * 2 1 4 4 H 1.48503 * 109.47118 * 239.99531 * 3 2 1 5 5 H 1.48505 * 109.47345 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47472 * 119.99677 * 3 2 1 7 7 C 1.37882 * 119.99432 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99487 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00209 * 0.02562 * 7 2 1 10 10 H 1.08997 * 109.48407 * 59.96029 * 9 7 2 11 11 C 1.53045 * 109.48702 * 299.89094 * 9 7 2 12 12 N 1.46966 * 109.35993 * 181.63021 * 11 9 7 13 13 C 1.46958 * 110.87901 * 59.32299 * 12 11 9 14 14 C 1.53044 * 109.36348 * 300.67872 * 13 12 11 15 15 N 1.46953 * 109.36757 * 58.40240 * 14 13 12 16 16 C 1.46905 * 111.00406 * 176.81231 * 15 14 13 17 17 C 1.50703 * 109.46698 * 293.80236 * 16 15 14 18 18 C 1.38235 * 120.00293 * 89.99772 * 17 16 15 19 19 C 1.38230 * 119.99899 * 180.02562 * 18 17 16 20 20 C 1.38235 * 120.00326 * 359.95697 * 19 18 17 21 21 C 1.38234 * 119.99814 * 359.97438 * 20 19 18 22 22 C 1.38234 * 119.99481 * 270.01653 * 17 16 15 23 23 H 0.97004 * 119.99460 * 0.02562 * 1 2 3 24 24 H 1.08994 * 109.49090 * 301.59485 * 11 9 7 25 25 H 1.08997 * 109.49203 * 61.67039 * 11 9 7 26 26 H 1.00907 * 110.99716 * 183.19004 * 12 11 9 27 27 H 1.09005 * 109.48973 * 60.64401 * 13 12 11 28 28 H 1.08999 * 109.48806 * 180.68913 * 13 12 11 29 29 H 1.09007 * 109.49157 * 298.43248 * 14 13 12 30 30 H 1.09003 * 109.48994 * 178.37215 * 14 13 12 31 31 H 1.08993 * 109.47248 * 173.80278 * 16 15 14 32 32 H 1.09003 * 109.47029 * 53.79642 * 16 15 14 33 33 H 1.08001 * 119.99730 * 359.97438 * 18 17 16 34 34 H 1.08000 * 120.00376 * 179.97438 * 19 18 17 35 35 H 1.08000 * 120.00616 * 179.72578 * 20 19 18 36 36 H 1.08001 * 120.00299 * 179.97438 * 21 20 19 37 37 H 1.07997 * 120.00441 * 0.02562 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1030 1.6962 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0044 -1.1942 0.0005 8 1 3.0844 -1.1942 0.0010 9 6 1.2508 -2.4992 0.0005 10 1 0.6239 -2.5570 -0.8892 11 6 0.3724 -2.5815 1.2511 12 7 -0.3313 -3.8716 1.2681 13 6 0.6233 -4.9890 1.2687 14 6 1.5018 -4.9065 0.0182 15 7 2.2054 -3.6165 0.0012 16 6 3.1182 -3.5298 -1.1466 17 6 4.2271 -4.5372 -0.9838 18 6 4.0805 -5.8145 -1.4917 19 6 5.0975 -6.7387 -1.3418 20 6 6.2613 -6.3854 -0.6849 21 6 6.4084 -5.1077 -0.1783 22 6 5.3906 -4.1841 -0.3263 23 1 -0.4849 0.8401 -0.0004 24 1 0.9968 -2.4961 2.1404 25 1 -0.3556 -1.7704 1.2382 26 1 -0.9583 -3.9312 2.0565 27 1 1.2506 -4.9309 2.1583 28 1 0.0782 -5.9329 1.2691 29 1 0.8774 -4.9920 -0.8712 30 1 2.2298 -5.7177 0.0311 31 1 3.5428 -2.5273 -1.1982 32 1 2.5687 -3.7394 -2.0644 33 1 3.1712 -6.0906 -2.0048 34 1 4.9829 -7.7368 -1.7382 35 1 7.0541 -7.1088 -0.5640 36 1 7.3175 -4.8317 0.3353 37 1 5.5048 -3.1864 0.0711 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000165626687.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:40:00 Heat of formation + Delta-G solvation = 36.394520 kcal Electronic energy + Delta-G solvation = -18062.009866 eV Core-core repulsion = 15417.908183 eV Total energy + Delta-G solvation = -2644.101684 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.19776 -37.72175 -33.92667 -33.02205 -30.72221 -30.62072 -29.51891 -26.39128 -25.08174 -22.90067 -22.31950 -21.61603 -20.47611 -18.67281 -16.67912 -16.41427 -15.57002 -15.01426 -14.76509 -14.45983 -13.90207 -13.68742 -13.46305 -13.24048 -13.13595 -12.77203 -12.35748 -12.04350 -11.73646 -11.24376 -10.96869 -10.85700 -10.73716 -10.66697 -10.60269 -10.16179 -10.03052 -9.54604 -9.04481 -8.61892 -8.50604 -8.35813 -7.59948 -7.15649 -6.06225 -4.11783 1.65746 1.69843 3.29409 3.34328 3.36695 4.06595 4.37182 5.05469 5.10296 5.15570 5.19340 5.29170 5.32195 5.43610 5.77548 5.79138 5.82521 5.99998 6.01045 6.10079 6.27217 6.37347 6.38804 6.55394 6.61834 6.73080 6.76760 6.82946 6.92179 7.08782 7.31118 7.36504 7.57354 7.73863 7.89057 8.10041 8.19842 8.33932 8.58791 8.95539 9.53607 11.00310 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.021407 B = 0.007663 C = 0.006010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1307.699414 B = 3653.211337 C = 4657.679692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.062 3.938 3 Si 0.897 3.103 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.511 4.511 8 H 0.064 0.936 9 C 0.224 3.776 10 H 0.008 0.992 11 C 0.068 3.932 12 N -0.698 5.698 13 C 0.064 3.936 14 C 0.055 3.945 15 N -0.529 5.529 16 C 0.095 3.905 17 C -0.059 4.059 18 C -0.119 4.119 19 C -0.126 4.126 20 C -0.134 4.134 21 C -0.124 4.124 22 C -0.099 4.099 23 H 0.263 0.737 24 H 0.012 0.988 25 H 0.107 0.893 26 H 0.324 0.676 27 H 0.026 0.974 28 H 0.060 0.940 29 H 0.027 0.973 30 H 0.064 0.936 31 H 0.098 0.902 32 H 0.029 0.971 33 H 0.116 0.884 34 H 0.115 0.885 35 H 0.114 0.886 36 H 0.116 0.884 37 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.973 -10.145 -0.363 12.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.140 4.140 3 Si 0.724 3.276 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.550 4.550 8 H 0.082 0.918 9 C 0.117 3.883 10 H 0.026 0.974 11 C -0.060 4.060 12 N -0.328 5.328 13 C -0.066 4.066 14 C -0.074 4.074 15 N -0.254 5.254 16 C -0.033 4.033 17 C -0.060 4.060 18 C -0.137 4.137 19 C -0.144 4.144 20 C -0.152 4.152 21 C -0.143 4.143 22 C -0.118 4.118 23 H 0.073 0.927 24 H 0.030 0.970 25 H 0.124 0.876 26 H 0.140 0.860 27 H 0.044 0.956 28 H 0.078 0.922 29 H 0.045 0.955 30 H 0.083 0.917 31 H 0.116 0.884 32 H 0.047 0.953 33 H 0.134 0.866 34 H 0.133 0.867 35 H 0.132 0.868 36 H 0.134 0.866 37 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 6.979 -9.969 -0.621 12.185 hybrid contribution 0.262 0.803 0.278 0.889 sum 7.241 -9.166 -0.343 11.686 Atomic orbital electron populations 1.69875 1.05847 1.26800 1.50222 1.24955 0.94905 0.99176 0.94972 0.86583 0.79516 0.82810 0.78657 1.20237 1.21275 1.20219 1.21103 0.93260 0.89654 1.50988 0.91760 1.19240 0.88374 0.87145 0.93516 0.97431 1.22297 0.97203 0.88985 0.97563 1.60741 1.20453 1.03940 1.47636 1.21862 0.93612 0.94115 0.97049 1.22120 0.95196 0.93368 0.96670 1.62229 1.20457 1.02447 1.40257 1.21021 0.91837 0.98336 0.92068 1.20144 0.95411 0.94675 0.95776 1.21094 0.98644 0.93401 1.00610 1.21030 0.94108 0.99093 1.00163 1.21015 0.97791 0.96502 0.99886 1.21112 0.98921 0.93852 1.00370 1.21114 0.92973 0.99884 0.97831 0.92740 0.96954 0.87554 0.85983 0.95562 0.92207 0.95511 0.91744 0.88428 0.95293 0.86630 0.86728 0.86832 0.86597 0.85854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.88 11.34 55.43 0.63 -24.25 16 2 C 0.06 1.67 5.30 -17.82 -0.09 1.58 16 3 Si 0.90 20.89 29.54 -169.99 -5.02 15.87 16 4 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 5 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 6 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 7 C -0.51 -13.69 7.80 -34.44 -0.27 -13.96 16 8 H 0.06 1.70 6.51 -52.49 -0.34 1.36 16 9 C 0.22 5.66 1.95 -68.81 -0.13 5.53 16 10 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 11 C 0.07 1.66 5.76 -3.76 -0.02 1.64 16 12 N -0.70 -14.45 6.90 -113.64 -0.78 -15.23 16 13 C 0.06 1.19 6.72 -3.77 -0.03 1.16 16 14 C 0.06 1.07 5.25 -3.77 -0.02 1.05 16 15 N -0.53 -11.56 4.51 -229.32 -1.03 -12.59 16 16 C 0.09 1.89 4.91 -4.97 -0.02 1.87 16 17 C -0.06 -1.02 4.89 -104.62 -0.51 -1.53 16 18 C -0.12 -1.79 7.92 -39.59 -0.31 -2.11 16 19 C -0.13 -1.66 10.05 -39.59 -0.40 -2.05 16 20 C -0.13 -1.71 10.05 -39.58 -0.40 -2.10 16 21 C -0.12 -1.71 10.05 -39.58 -0.40 -2.11 16 22 C -0.10 -1.60 9.70 -39.58 -0.38 -1.99 16 23 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 24 H 0.01 0.31 8.14 -51.93 -0.42 -0.12 16 25 H 0.11 2.84 6.13 -51.93 -0.32 2.52 16 26 H 0.32 5.89 8.90 -39.29 -0.35 5.54 16 27 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 29 H 0.03 0.54 8.14 -51.92 -0.42 0.12 16 30 H 0.06 1.14 5.95 -51.93 -0.31 0.83 16 31 H 0.10 2.08 5.93 -51.93 -0.31 1.77 16 32 H 0.03 0.58 8.06 -51.93 -0.42 0.16 16 33 H 0.12 1.64 7.99 -52.49 -0.42 1.22 16 34 H 0.11 1.22 8.06 -52.49 -0.42 0.80 16 35 H 0.11 1.15 8.06 -52.49 -0.42 0.73 16 36 H 0.12 1.32 8.06 -52.49 -0.42 0.90 16 37 H 0.12 1.99 8.06 -52.49 -0.42 1.57 16 LS Contribution 294.68 15.07 4.44 4.44 Total: -1.00 -28.35 294.68 -10.17 -38.52 By element: Atomic # 1 Polarization: 11.67 SS G_CDS: -5.40 Total: 6.26 kcal Atomic # 6 Polarization: -10.03 SS G_CDS: -2.99 Total: -13.02 kcal Atomic # 7 Polarization: -50.88 SS G_CDS: -1.19 Total: -52.07 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -28.35 -10.17 -38.52 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000165626687.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.911 kcal (2) G-P(sol) polarization free energy of solvation -28.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.516 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds