Wall clock time and date at job start Mon Mar 30 2020 03:40:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86793 * 120.00240 * 2 1 4 4 H 1.48503 * 109.47118 * 239.99531 * 3 2 1 5 5 H 1.48505 * 109.47345 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47472 * 119.99677 * 3 2 1 7 7 C 1.37882 * 119.99432 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99487 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00209 * 0.02562 * 7 2 1 10 10 H 1.08997 * 109.48407 * 59.96029 * 9 7 2 11 11 C 1.53045 * 109.48702 * 299.89094 * 9 7 2 12 12 N 1.46966 * 109.35993 * 181.63021 * 11 9 7 13 13 C 1.46958 * 110.87901 * 59.32299 * 12 11 9 14 14 C 1.53044 * 109.36348 * 300.67872 * 13 12 11 15 15 N 1.46953 * 109.36757 * 58.40240 * 14 13 12 16 16 C 1.46905 * 111.00406 * 176.81231 * 15 14 13 17 17 C 1.50703 * 109.46698 * 293.80236 * 16 15 14 18 18 C 1.38235 * 120.00293 * 89.99772 * 17 16 15 19 19 C 1.38230 * 119.99899 * 180.02562 * 18 17 16 20 20 C 1.38235 * 120.00326 * 359.95697 * 19 18 17 21 21 C 1.38234 * 119.99814 * 359.97438 * 20 19 18 22 22 C 1.38234 * 119.99481 * 270.01653 * 17 16 15 23 23 H 0.97004 * 119.99460 * 0.02562 * 1 2 3 24 24 H 1.08994 * 109.49090 * 301.59485 * 11 9 7 25 25 H 1.08997 * 109.49203 * 61.67039 * 11 9 7 26 26 H 1.00907 * 110.99716 * 183.19004 * 12 11 9 27 27 H 1.09005 * 109.48973 * 60.64401 * 13 12 11 28 28 H 1.08999 * 109.48806 * 180.68913 * 13 12 11 29 29 H 1.09007 * 109.49157 * 298.43248 * 14 13 12 30 30 H 1.09003 * 109.48994 * 178.37215 * 14 13 12 31 31 H 1.08993 * 109.47248 * 173.80278 * 16 15 14 32 32 H 1.09003 * 109.47029 * 53.79642 * 16 15 14 33 33 H 1.08001 * 119.99730 * 359.97438 * 18 17 16 34 34 H 1.08000 * 120.00376 * 179.97438 * 19 18 17 35 35 H 1.08000 * 120.00616 * 179.72578 * 20 19 18 36 36 H 1.08001 * 120.00299 * 179.97438 * 21 20 19 37 37 H 1.07997 * 120.00441 * 0.02562 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1030 1.6962 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0044 -1.1942 0.0005 8 1 3.0844 -1.1942 0.0010 9 6 1.2508 -2.4992 0.0005 10 1 0.6239 -2.5570 -0.8892 11 6 0.3724 -2.5815 1.2511 12 7 -0.3313 -3.8716 1.2681 13 6 0.6233 -4.9890 1.2687 14 6 1.5018 -4.9065 0.0182 15 7 2.2054 -3.6165 0.0012 16 6 3.1182 -3.5298 -1.1466 17 6 4.2271 -4.5372 -0.9838 18 6 4.0805 -5.8145 -1.4917 19 6 5.0975 -6.7387 -1.3418 20 6 6.2613 -6.3854 -0.6849 21 6 6.4084 -5.1077 -0.1783 22 6 5.3906 -4.1841 -0.3263 23 1 -0.4849 0.8401 -0.0004 24 1 0.9968 -2.4961 2.1404 25 1 -0.3556 -1.7704 1.2382 26 1 -0.9583 -3.9312 2.0565 27 1 1.2506 -4.9309 2.1583 28 1 0.0782 -5.9329 1.2691 29 1 0.8774 -4.9920 -0.8712 30 1 2.2298 -5.7177 0.0311 31 1 3.5428 -2.5273 -1.1982 32 1 2.5687 -3.7394 -2.0644 33 1 3.1712 -6.0906 -2.0048 34 1 4.9829 -7.7368 -1.7382 35 1 7.0541 -7.1088 -0.5640 36 1 7.3175 -4.8317 0.3353 37 1 5.5048 -3.1864 0.0711 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000165626687.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:40:00 Heat of formation + Delta-G solvation = 17.352136 kcal Electronic energy + Delta-G solvation = -18062.835606 eV Core-core repulsion = 15417.908183 eV Total energy + Delta-G solvation = -2644.927423 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.55159 -39.26346 -35.52809 -35.01916 -32.10324 -31.79448 -31.29178 -28.02088 -26.97294 -24.47149 -23.71347 -23.15434 -21.78510 -20.47572 -18.64476 -17.54401 -17.42678 -16.53389 -16.07798 -15.99569 -15.55723 -15.40542 -15.06124 -14.91802 -14.41268 -14.17739 -14.05677 -13.34881 -13.23116 -12.92616 -12.76878 -12.63353 -12.47631 -12.15847 -11.97720 -11.94883 -11.73731 -11.25276 -10.98215 -10.57201 -9.73130 -9.58202 -9.32169 -8.95272 -8.14312 -6.27355 0.51793 0.58288 1.41580 1.42871 1.50762 2.39943 2.89333 3.11408 3.46325 3.56084 3.95003 4.04372 4.22122 4.24417 4.34266 4.42325 4.46778 4.49907 4.71351 4.72023 4.77453 4.84830 4.94605 4.98752 5.07031 5.20004 5.24928 5.39698 5.58426 5.63416 5.67565 5.68252 5.87228 6.03804 6.19775 6.24983 6.32340 6.65595 6.73020 6.87260 7.42010 8.91511 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.021407 B = 0.007663 C = 0.006010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1307.699414 B = 3653.211337 C = 4657.679692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.016 3.984 3 Si 0.960 3.040 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.271 1.271 7 C -0.527 4.527 8 H 0.060 0.940 9 C 0.230 3.770 10 H -0.038 1.038 11 C 0.083 3.917 12 N -0.702 5.702 13 C 0.064 3.936 14 C 0.056 3.944 15 N -0.534 5.534 16 C 0.102 3.898 17 C -0.081 4.081 18 C -0.127 4.127 19 C -0.121 4.121 20 C -0.126 4.126 21 C -0.124 4.124 22 C -0.120 4.120 23 H 0.264 0.736 24 H -0.001 1.001 25 H 0.079 0.921 26 H 0.341 0.659 27 H 0.026 0.974 28 H 0.098 0.902 29 H 0.016 0.984 30 H 0.088 0.912 31 H 0.072 0.928 32 H 0.018 0.982 33 H 0.119 0.881 34 H 0.147 0.853 35 H 0.150 0.850 36 H 0.140 0.860 37 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.728 -12.197 0.026 14.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.183 4.183 3 Si 0.785 3.215 4 H -0.197 1.197 5 H -0.207 1.207 6 H -0.196 1.196 7 C -0.566 4.566 8 H 0.078 0.922 9 C 0.123 3.877 10 H -0.021 1.021 11 C -0.047 4.047 12 N -0.333 5.333 13 C -0.065 4.065 14 C -0.072 4.072 15 N -0.258 5.258 16 C -0.026 4.026 17 C -0.082 4.082 18 C -0.145 4.145 19 C -0.138 4.138 20 C -0.143 4.143 21 C -0.142 4.142 22 C -0.138 4.138 23 H 0.073 0.927 24 H 0.017 0.983 25 H 0.097 0.903 26 H 0.159 0.841 27 H 0.045 0.955 28 H 0.116 0.884 29 H 0.034 0.966 30 H 0.106 0.894 31 H 0.090 0.910 32 H 0.037 0.963 33 H 0.137 0.863 34 H 0.165 0.835 35 H 0.167 0.833 36 H 0.158 0.842 37 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 8.738 -12.045 -0.227 14.882 hybrid contribution -0.245 1.335 0.128 1.363 sum 8.493 -10.710 -0.099 13.669 Atomic orbital electron populations 1.70011 1.07155 1.27540 1.50769 1.25726 0.95702 1.02408 0.94512 0.85582 0.78337 0.78727 0.78835 1.19681 1.20743 1.19628 1.21358 0.93253 0.90841 1.51117 0.92155 1.18990 0.88486 0.88297 0.91942 1.02057 1.21893 0.96207 0.90224 0.96329 1.60632 1.20916 1.03013 1.48751 1.21987 0.93488 0.94645 0.96406 1.22213 0.95628 0.92648 0.96746 1.62217 1.19851 1.02566 1.41211 1.20875 0.92352 0.98325 0.91020 1.19892 0.94900 0.95033 0.98353 1.21180 0.99763 0.92886 1.00681 1.21400 0.93315 0.99924 0.99192 1.21466 0.98365 0.96498 0.98018 1.21397 0.98893 0.93853 1.00012 1.21140 0.93768 1.00195 0.98716 0.92721 0.98279 0.90291 0.84128 0.95546 0.88430 0.96588 0.89412 0.90956 0.96342 0.86268 0.83539 0.83267 0.84175 0.87218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.03 11.34 21.45 0.24 -52.79 16 2 C 0.02 0.89 5.30 84.66 0.45 1.34 16 3 Si 0.96 43.75 29.54 68.60 2.03 45.78 16 4 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 5 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 6 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 7 C -0.53 -29.46 7.80 25.60 0.20 -29.26 16 8 H 0.06 3.34 6.51 -2.91 -0.02 3.32 16 9 C 0.23 12.22 1.95 44.17 0.09 12.30 16 10 H -0.04 -2.32 8.14 -2.39 -0.02 -2.34 16 11 C 0.08 4.18 5.76 86.31 0.50 4.68 16 12 N -0.70 -29.02 6.90 -513.44 -3.54 -32.57 16 13 C 0.06 2.30 6.72 86.31 0.58 2.88 16 14 C 0.06 2.15 5.25 86.31 0.45 2.60 16 15 N -0.53 -24.02 4.51 -879.43 -3.97 -27.98 16 16 C 0.10 4.24 4.91 85.56 0.42 4.66 16 17 C -0.08 -2.77 4.89 -19.87 -0.10 -2.87 16 18 C -0.13 -3.60 7.92 22.27 0.18 -3.42 16 19 C -0.12 -2.72 10.05 22.27 0.22 -2.49 16 20 C -0.13 -2.67 10.05 22.27 0.22 -2.44 16 21 C -0.12 -3.06 10.05 22.27 0.22 -2.84 16 22 C -0.12 -3.80 9.70 22.27 0.22 -3.58 16 23 H 0.26 14.50 8.31 -92.71 -0.77 13.73 16 24 H 0.00 -0.05 8.14 -2.39 -0.02 -0.07 16 25 H 0.08 4.41 6.13 -2.39 -0.01 4.39 16 26 H 0.34 12.13 8.90 -89.69 -0.80 11.33 16 27 H 0.03 0.96 8.14 -2.38 -0.02 0.94 16 28 H 0.10 2.79 8.14 -2.39 -0.02 2.77 16 29 H 0.02 0.65 8.14 -2.38 -0.02 0.63 16 30 H 0.09 2.96 5.95 -2.39 -0.01 2.95 16 31 H 0.07 3.30 5.93 -2.39 -0.01 3.29 16 32 H 0.02 0.78 8.06 -2.39 -0.02 0.76 16 33 H 0.12 3.22 7.99 -2.91 -0.02 3.20 16 34 H 0.15 2.38 8.06 -2.91 -0.02 2.35 16 35 H 0.15 2.16 8.06 -2.91 -0.02 2.13 16 36 H 0.14 2.73 8.06 -2.91 -0.02 2.71 16 37 H 0.11 3.67 8.06 -2.91 -0.02 3.64 16 Total: -1.00 -63.49 294.68 -1.33 -64.82 By element: Atomic # 1 Polarization: 20.93 SS G_CDS: 0.26 Total: 21.19 kcal Atomic # 6 Polarization: -22.10 SS G_CDS: 3.65 Total: -18.45 kcal Atomic # 7 Polarization: -106.07 SS G_CDS: -7.27 Total: -113.34 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.78 kcal Total: -63.49 -1.33 -64.82 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000165626687.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.171 kcal (2) G-P(sol) polarization free energy of solvation -63.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.819 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds