Wall clock time and date at job start Mon Mar 30 2020 03:31:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86801 * 120.00042 * 2 1 4 4 H 1.48502 * 109.47304 * 270.00575 * 3 2 1 5 5 H 1.48505 * 109.46912 * 30.00888 * 3 2 1 6 6 H 1.48496 * 109.47086 * 150.00320 * 3 2 1 7 7 C 1.37878 * 120.00027 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00253 * 359.97438 * 7 2 1 9 9 C 1.50702 * 120.00130 * 179.97438 * 7 2 1 10 10 N 1.46894 * 109.47419 * 179.97438 * 9 7 2 11 11 C 1.46905 * 111.00258 * 180.02562 * 10 9 7 12 12 H 1.09001 * 109.71747 * 319.37142 * 11 10 9 13 13 C 1.53253 * 109.72945 * 80.00282 * 11 10 9 14 14 C 1.51508 * 110.74231 * 204.25269 * 13 11 10 15 15 N 1.45525 * 114.60767 * 292.18386 * 14 13 11 16 16 C 1.46928 * 112.68040 * 69.25750 * 15 14 13 17 17 C 1.51448 * 108.56484 * 273.45449 * 16 15 14 18 18 C 1.38334 * 119.68898 * 250.28432 * 17 16 15 19 19 C 1.38295 * 119.63661 * 180.33887 * 18 17 16 20 20 C 1.38259 * 120.09723 * 359.94207 * 19 18 17 21 21 C 1.38327 * 120.05047 * 359.96660 * 20 19 18 22 22 C 1.37282 * 120.08173 * 70.43755 * 17 16 15 23 23 H 0.97005 * 120.00211 * 359.97438 * 1 2 3 24 24 H 1.09003 * 109.47199 * 59.99231 * 9 7 2 25 25 H 1.09001 * 109.47015 * 299.99950 * 9 7 2 26 26 H 1.00905 * 111.00125 * 56.04430 * 10 9 7 27 27 H 1.09002 * 109.22087 * 83.92619 * 13 11 10 28 28 H 1.09006 * 109.18764 * 324.55558 * 13 11 10 29 29 H 1.09003 * 108.45520 * 170.85906 * 14 13 11 30 30 H 1.09003 * 108.32325 * 53.42048 * 14 13 11 31 31 H 1.00898 * 111.00008 * 194.45860 * 15 14 13 32 32 H 1.09003 * 109.61970 * 33.17796 * 16 15 14 33 33 H 1.09000 * 109.61862 * 153.72955 * 16 15 14 34 34 H 1.08003 * 120.17918 * 0.31337 * 18 17 16 35 35 H 1.08000 * 119.95341 * 179.97438 * 19 18 17 36 36 H 1.08000 * 119.97669 * 179.97438 * 20 19 18 37 37 H 1.07994 * 120.20379 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4466 2.6526 0.7003 6 1 3.5466 1.4401 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 7 4.0012 -2.5790 -0.0010 11 6 5.4697 -2.6182 -0.0009 12 1 5.8582 -1.8496 -0.6691 13 6 5.9935 -2.3816 1.4197 14 6 7.4058 -1.8339 1.3866 15 7 8.4078 -2.7708 0.9008 16 6 8.2692 -3.0550 -0.5341 17 6 7.2795 -4.1882 -0.7078 18 6 7.7260 -5.4303 -1.1218 19 6 6.8204 -6.4624 -1.2868 20 6 5.4767 -6.2523 -1.0377 21 6 5.0355 -5.0089 -0.6221 22 6 5.9456 -3.9811 -0.4581 23 1 -0.4851 0.8401 0.0004 24 1 3.8752 -0.6803 0.8888 25 1 3.8745 -0.6801 -0.8911 26 1 3.6254 -3.0955 -0.7821 27 1 5.9870 -3.3246 1.9663 28 1 5.3438 -1.6683 1.9269 29 1 7.6807 -1.5273 2.3959 30 1 7.4168 -0.9531 0.7447 31 1 9.3391 -2.4486 1.1172 32 1 7.9030 -2.1670 -1.0493 33 1 9.2358 -3.3470 -0.9444 34 1 8.7760 -5.5930 -1.3155 35 1 7.1633 -7.4341 -1.6103 36 1 4.7712 -7.0595 -1.1676 37 1 3.9866 -4.8422 -0.4264 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000168712656.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:26 Heat of formation + Delta-G solvation = 32.170216 kcal Electronic energy + Delta-G solvation = -17849.672510 eV Core-core repulsion = 15205.387646 eV Total energy + Delta-G solvation = -2644.284863 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.99781 -36.83033 -35.57544 -32.76624 -31.53095 -30.87996 -29.91478 -27.05414 -25.39887 -23.95254 -22.11152 -21.32071 -20.32473 -19.67513 -17.16253 -16.47365 -16.41771 -15.00508 -14.88645 -14.66866 -14.53284 -14.20354 -13.74607 -13.49345 -13.33330 -12.67944 -12.51445 -12.37597 -11.95538 -11.76507 -11.37101 -11.23537 -10.88927 -10.84411 -10.69041 -10.57431 -10.06931 -9.80325 -9.29218 -8.62574 -8.62320 -8.44997 -8.40376 -7.54059 -6.07725 -4.05639 1.56520 1.62234 3.26016 3.33760 3.35721 3.88278 4.33437 4.39784 4.80158 4.88169 4.92107 5.10656 5.19860 5.25186 5.25972 5.29125 5.44704 5.51500 5.60656 5.81275 5.85359 5.97378 6.03964 6.16828 6.26300 6.31953 6.62425 6.67390 6.71486 6.76816 6.88869 6.99524 7.03683 7.23034 7.35310 7.60138 7.87609 8.28359 8.62601 9.00357 9.54107 11.05581 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.027012 B = 0.006394 C = 0.005436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1036.345361 B = 4377.929964 C = 5149.487776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.069 3.931 3 Si 0.877 3.123 4 H -0.278 1.278 5 H -0.285 1.285 6 H -0.267 1.267 7 C -0.515 4.515 8 H 0.080 0.920 9 C 0.164 3.836 10 N -0.674 5.674 11 C 0.122 3.878 12 H 0.040 0.960 13 C -0.103 4.103 14 C 0.066 3.934 15 N -0.691 5.691 16 C 0.099 3.901 17 C -0.074 4.074 18 C -0.114 4.114 19 C -0.131 4.131 20 C -0.123 4.123 21 C -0.107 4.107 22 C -0.065 4.065 23 H 0.264 0.736 24 H 0.028 0.972 25 H -0.022 1.022 26 H 0.338 0.662 27 H 0.072 0.928 28 H 0.081 0.919 29 H 0.070 0.930 30 H 0.023 0.977 31 H 0.344 0.656 32 H 0.048 0.952 33 H 0.075 0.925 34 H 0.116 0.884 35 H 0.115 0.885 36 H 0.118 0.882 37 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.777 -7.617 -1.368 19.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.133 4.133 3 Si 0.704 3.296 4 H -0.204 1.204 5 H -0.211 1.211 6 H -0.192 1.192 7 C -0.554 4.554 8 H 0.098 0.902 9 C 0.037 3.963 10 N -0.306 5.306 11 C 0.012 3.988 12 H 0.057 0.943 13 C -0.141 4.141 14 C -0.064 4.064 15 N -0.323 5.323 16 C -0.029 4.029 17 C -0.075 4.075 18 C -0.132 4.132 19 C -0.149 4.149 20 C -0.142 4.142 21 C -0.125 4.125 22 C -0.066 4.066 23 H 0.074 0.926 24 H 0.046 0.954 25 H -0.004 1.004 26 H 0.157 0.843 27 H 0.090 0.910 28 H 0.099 0.901 29 H 0.088 0.912 30 H 0.041 0.959 31 H 0.163 0.837 32 H 0.066 0.934 33 H 0.093 0.907 34 H 0.134 0.866 35 H 0.133 0.867 36 H 0.136 0.864 37 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 17.189 -8.058 -0.494 18.991 hybrid contribution 0.845 1.980 -1.270 2.499 sum 18.034 -6.077 -1.764 19.112 Atomic orbital electron populations 1.69895 1.06139 1.26878 1.50918 1.24894 0.94735 0.98889 0.94739 0.86839 0.80349 0.83971 0.78430 1.20391 1.21104 1.19190 1.21044 0.88860 0.94834 1.50632 0.90239 1.20042 0.96650 0.84927 0.94703 1.60610 1.03577 1.16860 1.49554 1.20644 0.90466 0.91993 0.95715 0.94272 1.21347 0.93582 1.02610 0.96563 1.21376 0.92873 0.92518 0.99615 1.59078 1.06791 1.50776 1.15616 1.21010 0.97583 0.95815 0.88521 1.19509 0.93534 0.94995 0.99448 1.20924 0.98997 0.92515 1.00789 1.21050 0.93596 0.98657 1.01582 1.21165 0.95661 0.97245 1.00088 1.21251 1.00677 0.92258 0.98287 1.19806 0.92870 0.96085 0.97789 0.92630 0.95414 1.00424 0.84260 0.90961 0.90071 0.91157 0.95871 0.83702 0.93374 0.90660 0.86563 0.86665 0.86359 0.84452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.64 13.96 55.43 0.77 -26.87 16 2 C 0.07 2.01 5.47 -17.82 -0.10 1.91 16 3 Si 0.88 21.58 27.47 -169.99 -4.67 16.91 16 4 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.27 -6.32 6.54 56.52 0.37 -5.95 16 7 C -0.52 -14.72 9.87 -34.44 -0.34 -15.06 16 8 H 0.08 2.45 8.06 -52.49 -0.42 2.03 16 9 C 0.16 3.99 4.28 -4.98 -0.02 3.97 16 10 N -0.67 -14.02 5.62 -108.70 -0.61 -14.63 16 11 C 0.12 2.16 2.18 -68.38 -0.15 2.01 16 12 H 0.04 0.72 6.72 -51.93 -0.35 0.37 16 13 C -0.10 -1.68 5.39 -27.35 -0.15 -1.83 16 14 C 0.07 0.87 5.87 -5.32 -0.03 0.84 16 15 N -0.69 -8.22 6.52 -116.49 -0.76 -8.98 16 16 C 0.10 1.19 6.03 -4.59 -0.03 1.16 16 17 C -0.07 -1.04 5.41 -104.57 -0.57 -1.60 16 18 C -0.11 -1.42 9.69 -39.53 -0.38 -1.81 16 19 C -0.13 -1.60 10.04 -39.55 -0.40 -2.00 16 20 C -0.12 -1.65 10.05 -39.54 -0.40 -2.05 16 21 C -0.11 -1.67 9.02 -39.54 -0.36 -2.02 16 22 C -0.06 -1.04 4.95 -104.61 -0.52 -1.56 16 23 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 24 H 0.03 0.69 6.07 -51.93 -0.32 0.37 16 25 H -0.02 -0.53 7.50 -51.93 -0.39 -0.92 16 26 H 0.34 6.88 6.78 -39.29 -0.27 6.62 16 27 H 0.07 1.23 7.86 -51.93 -0.41 0.83 16 28 H 0.08 1.45 6.85 -51.93 -0.36 1.09 16 29 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.02 0.31 7.72 -51.93 -0.40 -0.09 16 31 H 0.34 3.15 8.89 -39.29 -0.35 2.80 16 32 H 0.05 0.61 6.80 -51.93 -0.35 0.26 16 33 H 0.07 0.71 7.92 -51.93 -0.41 0.30 16 34 H 0.12 1.17 7.98 -52.48 -0.42 0.75 16 35 H 0.12 1.12 8.06 -52.49 -0.42 0.69 16 36 H 0.12 1.33 8.06 -52.49 -0.42 0.91 16 37 H 0.14 2.23 6.33 -52.49 -0.33 1.90 16 LS Contribution 290.63 15.07 4.38 4.38 Total: -1.00 -30.96 290.63 -9.53 -40.49 By element: Atomic # 1 Polarization: 11.94 SS G_CDS: -5.21 Total: 6.73 kcal Atomic # 6 Polarization: -14.60 SS G_CDS: -3.43 Total: -18.04 kcal Atomic # 7 Polarization: -49.88 SS G_CDS: -0.60 Total: -50.47 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -4.67 Total: 16.91 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -30.96 -9.53 -40.49 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000168712656.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.659 kcal (2) G-P(sol) polarization free energy of solvation -30.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.489 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds