Wall clock time and date at job start Mon Mar 30 2020 03:31:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86801 * 120.00042 * 2 1 4 4 H 1.48502 * 109.47304 * 270.00575 * 3 2 1 5 5 H 1.48505 * 109.46912 * 30.00888 * 3 2 1 6 6 H 1.48496 * 109.47086 * 150.00320 * 3 2 1 7 7 C 1.37878 * 120.00027 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00253 * 359.97438 * 7 2 1 9 9 C 1.50702 * 120.00130 * 179.97438 * 7 2 1 10 10 N 1.46894 * 109.47419 * 179.97438 * 9 7 2 11 11 C 1.46905 * 111.00258 * 180.02562 * 10 9 7 12 12 H 1.09001 * 109.71747 * 319.37142 * 11 10 9 13 13 C 1.53253 * 109.72945 * 80.00282 * 11 10 9 14 14 C 1.51508 * 110.74231 * 204.25269 * 13 11 10 15 15 N 1.45525 * 114.60767 * 292.18386 * 14 13 11 16 16 C 1.46928 * 112.68040 * 69.25750 * 15 14 13 17 17 C 1.51448 * 108.56484 * 273.45449 * 16 15 14 18 18 C 1.38334 * 119.68898 * 250.28432 * 17 16 15 19 19 C 1.38295 * 119.63661 * 180.33887 * 18 17 16 20 20 C 1.38259 * 120.09723 * 359.94207 * 19 18 17 21 21 C 1.38327 * 120.05047 * 359.96660 * 20 19 18 22 22 C 1.37282 * 120.08173 * 70.43755 * 17 16 15 23 23 H 0.97005 * 120.00211 * 359.97438 * 1 2 3 24 24 H 1.09003 * 109.47199 * 59.99231 * 9 7 2 25 25 H 1.09001 * 109.47015 * 299.99950 * 9 7 2 26 26 H 1.00905 * 111.00125 * 56.04430 * 10 9 7 27 27 H 1.09002 * 109.22087 * 83.92619 * 13 11 10 28 28 H 1.09006 * 109.18764 * 324.55558 * 13 11 10 29 29 H 1.09003 * 108.45520 * 170.85906 * 14 13 11 30 30 H 1.09003 * 108.32325 * 53.42048 * 14 13 11 31 31 H 1.00898 * 111.00008 * 194.45860 * 15 14 13 32 32 H 1.09003 * 109.61970 * 33.17796 * 16 15 14 33 33 H 1.09000 * 109.61862 * 153.72955 * 16 15 14 34 34 H 1.08003 * 120.17918 * 0.31337 * 18 17 16 35 35 H 1.08000 * 119.95341 * 179.97438 * 19 18 17 36 36 H 1.08000 * 119.97669 * 179.97438 * 20 19 18 37 37 H 1.07994 * 120.20379 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4466 2.6526 0.7003 6 1 3.5466 1.4401 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 7 4.0012 -2.5790 -0.0010 11 6 5.4697 -2.6182 -0.0009 12 1 5.8582 -1.8496 -0.6691 13 6 5.9935 -2.3816 1.4197 14 6 7.4058 -1.8339 1.3866 15 7 8.4078 -2.7708 0.9008 16 6 8.2692 -3.0550 -0.5341 17 6 7.2795 -4.1882 -0.7078 18 6 7.7260 -5.4303 -1.1218 19 6 6.8204 -6.4624 -1.2868 20 6 5.4767 -6.2523 -1.0377 21 6 5.0355 -5.0089 -0.6221 22 6 5.9456 -3.9811 -0.4581 23 1 -0.4851 0.8401 0.0004 24 1 3.8752 -0.6803 0.8888 25 1 3.8745 -0.6801 -0.8911 26 1 3.6254 -3.0955 -0.7821 27 1 5.9870 -3.3246 1.9663 28 1 5.3438 -1.6683 1.9269 29 1 7.6807 -1.5273 2.3959 30 1 7.4168 -0.9531 0.7447 31 1 9.3391 -2.4486 1.1172 32 1 7.9030 -2.1670 -1.0493 33 1 9.2358 -3.3470 -0.9444 34 1 8.7760 -5.5930 -1.3155 35 1 7.1633 -7.4341 -1.6103 36 1 4.7712 -7.0595 -1.1676 37 1 3.9866 -4.8422 -0.4264 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000168712656.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:26 Heat of formation + Delta-G solvation = 9.924017 kcal Electronic energy + Delta-G solvation = -17850.637177 eV Core-core repulsion = 15205.387646 eV Total energy + Delta-G solvation = -2645.249531 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.12062 -37.98500 -36.97500 -34.80358 -32.69073 -32.36943 -31.02181 -28.90647 -26.44402 -25.31464 -23.49524 -22.86378 -21.47031 -20.96971 -19.07502 -17.86532 -17.46890 -16.50261 -16.31448 -15.83942 -15.77770 -15.62110 -15.07926 -14.87611 -14.59773 -14.43906 -14.08437 -13.64886 -13.33585 -13.06394 -12.78148 -12.60339 -12.44708 -12.21753 -11.97941 -11.88517 -11.75504 -11.45429 -11.37165 -10.84939 -9.66509 -9.54725 -9.40284 -9.19949 -8.33122 -6.37844 0.51658 0.55361 1.31033 1.33255 1.44535 2.30840 2.85572 3.00464 3.29054 3.43075 3.72694 3.90326 4.06338 4.11011 4.16662 4.27749 4.36114 4.47974 4.56892 4.65580 4.73374 4.76448 4.80939 4.90732 4.99419 5.01731 5.18726 5.23228 5.27974 5.51416 5.61667 5.68355 5.75978 5.97492 6.03958 6.19740 6.49001 6.58405 6.60971 6.70916 7.26919 8.83672 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.027012 B = 0.006394 C = 0.005436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1036.345361 B = 4377.929964 C = 5149.487776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C 0.010 3.990 3 Si 0.949 3.051 4 H -0.267 1.267 5 H -0.278 1.278 6 H -0.250 1.250 7 C -0.529 4.529 8 H 0.037 0.963 9 C 0.178 3.822 10 N -0.681 5.681 11 C 0.125 3.875 12 H 0.034 0.966 13 C -0.098 4.098 14 C 0.072 3.928 15 N -0.692 5.692 16 C 0.099 3.901 17 C -0.083 4.083 18 C -0.111 4.111 19 C -0.126 4.126 20 C -0.129 4.129 21 C -0.131 4.131 22 C -0.088 4.088 23 H 0.268 0.732 24 H 0.029 0.971 25 H -0.020 1.020 26 H 0.336 0.664 27 H 0.060 0.940 28 H 0.061 0.939 29 H 0.088 0.912 30 H 0.023 0.977 31 H 0.364 0.636 32 H 0.039 0.961 33 H 0.108 0.892 34 H 0.150 0.850 35 H 0.148 0.852 36 H 0.135 0.865 37 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.338 -7.633 -1.741 22.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.188 4.188 3 Si 0.772 3.228 4 H -0.192 1.192 5 H -0.203 1.203 6 H -0.174 1.174 7 C -0.567 4.567 8 H 0.055 0.945 9 C 0.050 3.950 10 N -0.313 5.313 11 C 0.015 3.985 12 H 0.052 0.948 13 C -0.137 4.137 14 C -0.058 4.058 15 N -0.326 5.326 16 C -0.029 4.029 17 C -0.084 4.084 18 C -0.129 4.129 19 C -0.144 4.144 20 C -0.147 4.147 21 C -0.150 4.150 22 C -0.088 4.088 23 H 0.077 0.923 24 H 0.047 0.953 25 H -0.002 1.002 26 H 0.156 0.844 27 H 0.078 0.922 28 H 0.079 0.921 29 H 0.106 0.894 30 H 0.041 0.959 31 H 0.185 0.815 32 H 0.057 0.943 33 H 0.126 0.874 34 H 0.167 0.833 35 H 0.166 0.834 36 H 0.153 0.847 37 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 20.782 -8.092 -0.862 22.318 hybrid contribution -0.301 1.815 -1.168 2.179 sum 20.481 -6.277 -2.030 21.517 Atomic orbital electron populations 1.70046 1.08135 1.28278 1.52131 1.25859 0.95641 1.03230 0.94050 0.85683 0.79446 0.78453 0.79173 1.19204 1.20330 1.17358 1.21301 0.91224 0.93503 1.50677 0.94458 1.19757 0.93763 0.86936 0.94557 1.60530 1.06222 1.14812 1.49705 1.20658 0.87918 0.93387 0.96521 0.94818 1.21292 0.95583 1.01529 0.95279 1.21238 0.91325 0.92402 1.00862 1.58967 1.07511 1.50429 1.15663 1.21086 0.98549 0.94761 0.88538 1.19812 0.92899 0.96596 0.99092 1.21335 1.00713 0.91593 0.99251 1.21459 0.92789 1.00118 1.00032 1.21401 0.97055 0.96646 0.99633 1.21216 0.99837 0.93721 1.00189 1.19759 0.94238 0.95059 0.99794 0.92269 0.95346 1.00198 0.84440 0.92152 0.92080 0.89366 0.95918 0.81492 0.94329 0.87388 0.83265 0.83437 0.84718 0.86583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.86 13.96 21.45 0.30 -59.56 16 2 C 0.01 0.59 5.47 84.66 0.46 1.05 16 3 Si 0.95 44.59 27.47 68.60 1.88 46.48 16 4 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 5 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 6 H -0.25 -10.96 6.54 99.48 0.65 -10.31 16 7 C -0.53 -31.44 9.87 25.60 0.25 -31.19 16 8 H 0.04 2.46 8.06 -2.91 -0.02 2.43 16 9 C 0.18 8.82 4.28 85.56 0.37 9.19 16 10 N -0.68 -29.54 5.62 -497.81 -2.80 -32.34 16 11 C 0.12 4.47 2.18 44.48 0.10 4.56 16 12 H 0.03 1.24 6.72 -2.39 -0.02 1.23 16 13 C -0.10 -3.21 5.39 30.19 0.16 -3.05 16 14 C 0.07 1.77 5.87 86.07 0.51 2.28 16 15 N -0.69 -14.43 6.52 -522.47 -3.41 -17.84 16 16 C 0.10 2.08 6.03 85.79 0.52 2.60 16 17 C -0.08 -2.15 5.41 -19.83 -0.11 -2.26 16 18 C -0.11 -2.37 9.69 22.31 0.22 -2.15 16 19 C -0.13 -2.70 10.04 22.29 0.22 -2.47 16 20 C -0.13 -3.32 10.05 22.30 0.22 -3.09 16 21 C -0.13 -4.19 9.02 22.30 0.20 -3.99 16 22 C -0.09 -2.80 4.95 -19.85 -0.10 -2.90 16 23 H 0.27 15.75 8.31 -92.70 -0.77 14.98 16 24 H 0.03 1.41 6.07 -2.39 -0.01 1.39 16 25 H -0.02 -0.95 7.50 -2.39 -0.02 -0.97 16 26 H 0.34 14.59 6.78 -89.69 -0.61 13.98 16 27 H 0.06 2.08 7.86 -2.39 -0.02 2.06 16 28 H 0.06 2.21 6.85 -2.38 -0.02 2.19 16 29 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 30 H 0.02 0.57 7.72 -2.39 -0.02 0.55 16 31 H 0.36 5.28 8.89 -89.70 -0.80 4.49 16 32 H 0.04 0.90 6.80 -2.39 -0.02 0.88 16 33 H 0.11 1.55 7.92 -2.39 -0.02 1.53 16 34 H 0.15 2.20 7.98 -2.91 -0.02 2.18 16 35 H 0.15 2.19 8.06 -2.91 -0.02 2.17 16 36 H 0.13 2.88 8.06 -2.91 -0.02 2.86 16 37 H 0.12 4.08 6.33 -2.91 -0.02 4.06 16 Total: -1.00 -69.06 290.63 -1.38 -70.44 By element: Atomic # 1 Polarization: 24.63 SS G_CDS: -0.38 Total: 24.25 kcal Atomic # 6 Polarization: -34.46 SS G_CDS: 3.02 Total: -31.43 kcal Atomic # 7 Polarization: -103.83 SS G_CDS: -5.91 Total: -109.73 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 1.88 Total: 46.48 kcal Total: -69.06 -1.38 -70.44 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000168712656.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.363 kcal (2) G-P(sol) polarization free energy of solvation -69.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.439 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds