Wall clock time and date at job start Mon Mar 30 2020 03:31:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86796 * 120.00549 * 2 1 4 4 H 1.48496 * 109.47566 * 240.00640 * 3 2 1 5 5 H 1.48507 * 109.46838 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47082 * 119.99781 * 3 2 1 7 7 C 1.37883 * 119.99638 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99908 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00200 * 359.97438 * 7 2 1 10 10 N 1.46894 * 109.47324 * 180.02562 * 9 7 2 11 11 C 1.46899 * 111.00116 * 179.97438 * 10 9 7 12 12 H 1.08992 * 109.76110 * 325.65074 * 11 10 9 13 13 C 1.53266 * 109.72708 * 204.99603 * 11 10 9 14 14 C 1.51513 * 110.69337 * 155.81530 * 13 11 10 15 15 N 1.45521 * 114.60883 * 67.79917 * 14 13 11 16 16 C 1.46918 * 112.69617 * 290.70040 * 15 14 13 17 17 C 1.51465 * 108.55454 * 86.58914 * 16 15 14 18 18 C 1.38320 * 119.69734 * 109.68061 * 17 16 15 19 19 C 1.38302 * 119.62740 * 179.91873 * 18 17 16 20 20 C 1.38258 * 120.09526 * 359.96071 * 19 18 17 21 21 C 1.38326 * 120.05017 * 0.05342 * 20 19 18 22 22 C 1.37280 * 120.05125 * 289.63024 * 17 16 15 23 23 H 0.97005 * 120.00162 * 359.97438 * 1 2 3 24 24 H 1.08994 * 109.47303 * 59.99833 * 9 7 2 25 25 H 1.09006 * 109.46627 * 299.99661 * 9 7 2 26 26 H 1.00906 * 111.00420 * 56.03721 * 10 9 7 27 27 H 1.09002 * 109.22664 * 35.51470 * 13 11 10 28 28 H 1.08997 * 109.22848 * 276.11600 * 13 11 10 29 29 H 1.08999 * 108.45548 * 189.13038 * 14 13 11 30 30 H 1.09003 * 108.45488 * 306.47132 * 14 13 11 31 31 H 1.00908 * 110.99994 * 55.91145 * 15 14 13 32 32 H 1.09007 * 109.61895 * 206.30651 * 16 15 14 33 33 H 1.08997 * 109.62060 * 326.86323 * 16 15 14 34 34 H 1.08001 * 120.18689 * 359.89265 * 18 17 16 35 35 H 1.07999 * 119.95562 * 179.97438 * 19 18 17 36 36 H 1.07999 * 119.97510 * 180.02562 * 20 19 18 37 37 H 1.07998 * 120.20057 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6962 1.2125 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 7 2.2054 -3.6158 -0.0005 11 6 1.5050 -4.9071 0.0001 12 1 0.5851 -4.8271 0.5791 13 6 2.4080 -5.9851 0.6097 14 6 1.5799 -7.1258 1.1652 15 7 0.8852 -7.9159 0.1598 16 6 -0.2052 -7.1753 -0.4892 17 6 0.3685 -6.3951 -1.6538 18 6 0.0688 -6.7776 -2.9489 19 6 0.5921 -6.0631 -4.0112 20 6 1.4092 -4.9725 -3.7778 21 6 1.7060 -4.5943 -2.4808 22 6 1.1810 -5.3130 -1.4227 23 1 -0.4850 0.8401 0.0004 24 1 0.6239 -2.5567 -0.8902 25 1 0.6246 -2.5571 0.8898 26 1 2.8404 -3.5488 0.7808 27 1 2.9989 -5.5459 1.4135 28 1 3.0780 -6.3692 -0.1594 29 1 2.2377 -7.7868 1.7296 30 1 0.8403 -6.7131 1.8514 31 1 1.5317 -8.2805 -0.5239 32 1 -0.9575 -7.8755 -0.8527 33 1 -0.6565 -6.4873 0.2256 34 1 -0.5698 -7.6296 -3.1295 35 1 0.3619 -6.3573 -5.0245 36 1 1.8164 -4.4157 -4.6088 37 1 2.3436 -3.7426 -2.2957 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000168712756.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:28 Heat of formation + Delta-G solvation = 22.373576 kcal Electronic energy + Delta-G solvation = -17951.195475 eV Core-core repulsion = 15306.485798 eV Total energy + Delta-G solvation = -2644.709677 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.97040 -36.75083 -35.42455 -32.81661 -31.43618 -30.48930 -29.69816 -26.56542 -25.06178 -23.83924 -22.28238 -21.22346 -21.01699 -19.61791 -16.81687 -16.48058 -15.62743 -15.12661 -14.73268 -14.60897 -14.39258 -13.97943 -13.76896 -13.38191 -12.95211 -12.51723 -12.22970 -12.17019 -11.96940 -11.84749 -11.30702 -11.10732 -10.92060 -10.84656 -10.55154 -10.49986 -10.34748 -9.91860 -9.21755 -8.76265 -8.53295 -8.29864 -8.07318 -7.41620 -6.05974 -4.08772 1.68718 1.82126 3.30977 3.35282 3.37869 4.09076 4.39381 4.49090 4.81463 5.01237 5.03943 5.14490 5.24710 5.30090 5.34550 5.49306 5.52978 5.71763 5.80554 5.86558 5.88115 6.00073 6.07627 6.17028 6.36927 6.41251 6.54143 6.78606 6.96725 7.06023 7.09752 7.27706 7.36840 7.39673 7.46386 7.74363 8.09151 8.31990 8.54639 9.00163 9.56355 11.04905 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.025602 B = 0.006375 C = 0.005592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1093.391877 B = 4391.120922 C = 5006.033543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.057 3.943 3 Si 0.899 3.101 4 H -0.276 1.276 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.517 4.517 8 H 0.062 0.938 9 C 0.196 3.804 10 N -0.683 5.683 11 C 0.121 3.879 12 H 0.048 0.952 13 C -0.149 4.149 14 C 0.058 3.942 15 N -0.680 5.680 16 C 0.099 3.901 17 C -0.133 4.133 18 C -0.119 4.119 19 C -0.132 4.132 20 C -0.129 4.129 21 C -0.081 4.081 22 C -0.057 4.057 23 H 0.262 0.738 24 H 0.029 0.971 25 H -0.015 1.015 26 H 0.333 0.667 27 H 0.073 0.927 28 H 0.065 0.935 29 H 0.071 0.929 30 H 0.067 0.933 31 H 0.342 0.658 32 H 0.080 0.920 33 H 0.078 0.922 34 H 0.116 0.884 35 H 0.113 0.887 36 H 0.116 0.884 37 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.793 -14.287 -2.490 14.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.144 4.144 3 Si 0.727 3.273 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.556 4.556 8 H 0.080 0.920 9 C 0.069 3.931 10 N -0.314 5.314 11 C 0.010 3.990 12 H 0.066 0.934 13 C -0.189 4.189 14 C -0.072 4.072 15 N -0.307 5.307 16 C -0.029 4.029 17 C -0.135 4.135 18 C -0.138 4.138 19 C -0.150 4.150 20 C -0.147 4.147 21 C -0.099 4.099 22 C -0.058 4.058 23 H 0.072 0.928 24 H 0.048 0.952 25 H 0.003 0.997 26 H 0.151 0.849 27 H 0.091 0.909 28 H 0.084 0.916 29 H 0.089 0.911 30 H 0.086 0.914 31 H 0.160 0.840 32 H 0.098 0.902 33 H 0.096 0.904 34 H 0.134 0.866 35 H 0.131 0.869 36 H 0.134 0.866 37 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 1.291 -14.441 -2.668 14.742 hybrid contribution 0.499 1.707 0.151 1.784 sum 1.790 -12.735 -2.516 13.104 Atomic orbital electron populations 1.69954 1.06095 1.26936 1.50527 1.24984 0.94852 0.99348 0.95267 0.86553 0.79433 0.82718 0.78642 1.20156 1.21327 1.20267 1.21126 0.93420 0.90215 1.50820 0.92015 1.19593 0.90500 0.87146 0.95852 1.60596 1.21115 1.00749 1.48980 1.20599 0.95820 0.90868 0.91667 0.93443 1.22189 0.98826 0.96947 1.00950 1.21500 0.97208 0.93820 0.94687 1.60269 1.14901 1.36772 1.18775 1.21204 0.93653 0.95192 0.92882 1.20394 0.99887 0.97572 0.95622 1.20911 1.00764 1.00117 0.92035 1.21057 0.98956 0.96617 0.98385 1.21263 0.99005 0.97163 0.97265 1.21431 0.98304 0.99148 0.90993 1.19773 0.96159 0.93928 0.95961 0.92821 0.95244 0.99711 0.84932 0.90876 0.91599 0.91070 0.91418 0.83984 0.90171 0.90389 0.86612 0.86897 0.86606 0.83606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.78 13.29 55.43 0.74 -26.04 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.90 21.59 29.54 -169.99 -5.02 16.57 16 4 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 6 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 7 C -0.52 -14.44 9.32 -34.44 -0.32 -14.76 16 8 H 0.06 1.68 7.81 -52.49 -0.41 1.27 16 9 C 0.20 5.05 5.02 -4.98 -0.02 5.03 16 10 N -0.68 -14.12 4.85 -108.68 -0.53 -14.65 16 11 C 0.12 2.14 2.21 -68.35 -0.15 1.98 16 12 H 0.05 0.91 6.62 -51.93 -0.34 0.57 16 13 C -0.15 -2.08 5.38 -27.35 -0.15 -2.23 16 14 C 0.06 0.71 5.87 -5.32 -0.03 0.68 16 15 N -0.68 -8.29 6.72 -116.49 -0.78 -9.07 16 16 C 0.10 1.31 6.11 -4.59 -0.03 1.28 16 17 C -0.13 -2.01 5.12 -104.56 -0.54 -2.55 16 18 C -0.12 -1.67 9.69 -39.53 -0.38 -2.05 16 19 C -0.13 -1.88 10.04 -39.55 -0.40 -2.27 16 20 C -0.13 -2.06 10.05 -39.54 -0.40 -2.45 16 21 C -0.08 -1.49 8.88 -39.54 -0.35 -1.84 16 22 C -0.06 -1.00 4.85 -104.59 -0.51 -1.50 16 23 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 24 H 0.03 0.84 7.70 -51.93 -0.40 0.44 16 25 H -0.01 -0.41 8.06 -51.93 -0.42 -0.83 16 26 H 0.33 6.53 8.01 -39.29 -0.31 6.21 16 27 H 0.07 0.97 7.56 -51.93 -0.39 0.58 16 28 H 0.07 0.93 7.86 -51.93 -0.41 0.53 16 29 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 30 H 0.07 0.86 7.72 -51.93 -0.40 0.46 16 31 H 0.34 4.00 8.50 -39.29 -0.33 3.67 16 32 H 0.08 0.93 7.92 -51.93 -0.41 0.52 16 33 H 0.08 1.11 6.80 -51.93 -0.35 0.76 16 34 H 0.12 1.32 7.98 -52.49 -0.42 0.90 16 35 H 0.11 1.31 8.06 -52.49 -0.42 0.89 16 36 H 0.12 1.64 8.06 -52.49 -0.42 1.22 16 37 H 0.15 3.00 6.91 -52.49 -0.36 2.63 16 LS Contribution 295.72 15.07 4.46 4.46 Total: -1.00 -29.49 295.72 -9.88 -39.38 By element: Atomic # 1 Polarization: 13.88 SS G_CDS: -5.37 Total: 8.51 kcal Atomic # 6 Polarization: -15.78 SS G_CDS: -3.37 Total: -19.15 kcal Atomic # 7 Polarization: -49.19 SS G_CDS: -0.57 Total: -49.76 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -29.49 -9.88 -39.38 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000168712756.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.749 kcal (2) G-P(sol) polarization free energy of solvation -29.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.375 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds