Wall clock time and date at job start Mon Mar 30 2020 03:31:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86796 * 120.00549 * 2 1 4 4 H 1.48496 * 109.47566 * 240.00640 * 3 2 1 5 5 H 1.48507 * 109.46838 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47082 * 119.99781 * 3 2 1 7 7 C 1.37883 * 119.99638 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99908 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00200 * 359.97438 * 7 2 1 10 10 N 1.46894 * 109.47324 * 180.02562 * 9 7 2 11 11 C 1.46899 * 111.00116 * 179.97438 * 10 9 7 12 12 H 1.08992 * 109.76110 * 325.65074 * 11 10 9 13 13 C 1.53266 * 109.72708 * 204.99603 * 11 10 9 14 14 C 1.51513 * 110.69337 * 155.81530 * 13 11 10 15 15 N 1.45521 * 114.60883 * 67.79917 * 14 13 11 16 16 C 1.46918 * 112.69617 * 290.70040 * 15 14 13 17 17 C 1.51465 * 108.55454 * 86.58914 * 16 15 14 18 18 C 1.38320 * 119.69734 * 109.68061 * 17 16 15 19 19 C 1.38302 * 119.62740 * 179.91873 * 18 17 16 20 20 C 1.38258 * 120.09526 * 359.96071 * 19 18 17 21 21 C 1.38326 * 120.05017 * 0.05342 * 20 19 18 22 22 C 1.37280 * 120.05125 * 289.63024 * 17 16 15 23 23 H 0.97005 * 120.00162 * 359.97438 * 1 2 3 24 24 H 1.08994 * 109.47303 * 59.99833 * 9 7 2 25 25 H 1.09006 * 109.46627 * 299.99661 * 9 7 2 26 26 H 1.00906 * 111.00420 * 56.03721 * 10 9 7 27 27 H 1.09002 * 109.22664 * 35.51470 * 13 11 10 28 28 H 1.08997 * 109.22848 * 276.11600 * 13 11 10 29 29 H 1.08999 * 108.45548 * 189.13038 * 14 13 11 30 30 H 1.09003 * 108.45488 * 306.47132 * 14 13 11 31 31 H 1.00908 * 110.99994 * 55.91145 * 15 14 13 32 32 H 1.09007 * 109.61895 * 206.30651 * 16 15 14 33 33 H 1.08997 * 109.62060 * 326.86323 * 16 15 14 34 34 H 1.08001 * 120.18689 * 359.89265 * 18 17 16 35 35 H 1.07999 * 119.95562 * 179.97438 * 19 18 17 36 36 H 1.07999 * 119.97510 * 180.02562 * 20 19 18 37 37 H 1.07998 * 120.20057 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6962 1.2125 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 7 2.2054 -3.6158 -0.0005 11 6 1.5050 -4.9071 0.0001 12 1 0.5851 -4.8271 0.5791 13 6 2.4080 -5.9851 0.6097 14 6 1.5799 -7.1258 1.1652 15 7 0.8852 -7.9159 0.1598 16 6 -0.2052 -7.1753 -0.4892 17 6 0.3685 -6.3951 -1.6538 18 6 0.0688 -6.7776 -2.9489 19 6 0.5921 -6.0631 -4.0112 20 6 1.4092 -4.9725 -3.7778 21 6 1.7060 -4.5943 -2.4808 22 6 1.1810 -5.3130 -1.4227 23 1 -0.4850 0.8401 0.0004 24 1 0.6239 -2.5567 -0.8902 25 1 0.6246 -2.5571 0.8898 26 1 2.8404 -3.5488 0.7808 27 1 2.9989 -5.5459 1.4135 28 1 3.0780 -6.3692 -0.1594 29 1 2.2377 -7.7868 1.7296 30 1 0.8403 -6.7131 1.8514 31 1 1.5317 -8.2805 -0.5239 32 1 -0.9575 -7.8755 -0.8527 33 1 -0.6565 -6.4873 0.2256 34 1 -0.5698 -7.6296 -3.1295 35 1 0.3619 -6.3573 -5.0245 36 1 1.8164 -4.4157 -4.6088 37 1 2.3436 -3.7426 -2.2957 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000168712756.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:28 Heat of formation + Delta-G solvation = 2.289212 kcal Electronic energy + Delta-G solvation = -17952.066399 eV Core-core repulsion = 15306.485798 eV Total energy + Delta-G solvation = -2645.580601 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.20353 -37.96481 -36.95139 -34.81749 -32.69692 -32.01482 -30.92417 -28.42898 -26.31919 -25.22360 -23.92041 -22.76561 -22.19040 -20.92910 -18.60546 -17.98124 -16.94452 -16.73664 -16.33491 -15.72238 -15.65789 -15.50841 -15.09390 -14.74769 -14.48532 -14.05559 -13.76646 -13.63655 -13.42544 -13.05898 -12.97586 -12.68663 -12.61517 -12.21075 -12.12694 -11.86286 -11.73807 -11.60480 -11.26568 -10.69438 -9.89601 -9.56307 -9.23396 -9.18458 -8.25479 -6.37486 0.46401 0.57972 1.38298 1.41875 1.49912 2.36777 2.87361 3.07786 3.38524 3.47743 3.78175 3.90536 3.95392 4.04088 4.17391 4.30305 4.41179 4.50960 4.60839 4.68103 4.76539 4.82268 4.95408 4.96838 5.05628 5.16520 5.21117 5.24686 5.28957 5.55636 5.60701 5.71382 5.83266 6.00451 6.04661 6.20736 6.39498 6.44759 6.68585 6.85426 7.33790 8.85939 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.025602 B = 0.006375 C = 0.005592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1093.391877 B = 4391.120922 C = 5006.033543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.002 3.998 3 Si 0.973 3.027 4 H -0.268 1.268 5 H -0.283 1.283 6 H -0.265 1.265 7 C -0.536 4.536 8 H 0.066 0.934 9 C 0.219 3.781 10 N -0.678 5.678 11 C 0.121 3.879 12 H 0.027 0.973 13 C -0.137 4.137 14 C 0.062 3.938 15 N -0.671 5.671 16 C 0.103 3.897 17 C -0.136 4.136 18 C -0.113 4.113 19 C -0.128 4.128 20 C -0.138 4.138 21 C -0.113 4.113 22 C -0.079 4.079 23 H 0.265 0.735 24 H -0.005 1.005 25 H -0.046 1.046 26 H 0.338 0.662 27 H 0.080 0.920 28 H 0.066 0.934 29 H 0.097 0.903 30 H 0.060 0.940 31 H 0.349 0.651 32 H 0.104 0.896 33 H 0.061 0.939 34 H 0.152 0.848 35 H 0.147 0.853 36 H 0.128 0.872 37 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.250 -15.782 -3.046 16.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.196 4.196 3 Si 0.797 3.203 4 H -0.193 1.193 5 H -0.208 1.208 6 H -0.189 1.189 7 C -0.575 4.575 8 H 0.084 0.916 9 C 0.091 3.909 10 N -0.308 5.308 11 C 0.010 3.990 12 H 0.044 0.956 13 C -0.177 4.177 14 C -0.068 4.068 15 N -0.299 5.299 16 C -0.026 4.026 17 C -0.138 4.138 18 C -0.132 4.132 19 C -0.146 4.146 20 C -0.156 4.156 21 C -0.131 4.131 22 C -0.081 4.081 23 H 0.074 0.926 24 H 0.013 0.987 25 H -0.028 1.028 26 H 0.157 0.843 27 H 0.098 0.902 28 H 0.085 0.915 29 H 0.115 0.885 30 H 0.079 0.921 31 H 0.167 0.833 32 H 0.122 0.878 33 H 0.080 0.920 34 H 0.169 0.831 35 H 0.165 0.835 36 H 0.146 0.854 37 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 1.769 -15.964 -3.221 16.382 hybrid contribution 0.320 2.103 0.280 2.145 sum 2.089 -13.862 -2.941 14.324 Atomic orbital electron populations 1.70097 1.07909 1.28066 1.51338 1.25965 0.95741 1.03437 0.94498 0.85383 0.78104 0.77591 0.79207 1.19343 1.20821 1.18932 1.21501 0.93793 0.91318 1.50840 0.91601 1.19115 0.90361 0.88780 0.92633 1.60462 1.20237 1.00961 1.49183 1.20676 0.95460 0.90283 0.92533 0.95552 1.22123 0.98338 0.96351 1.00917 1.21501 0.97182 0.93512 0.94648 1.60311 1.14810 1.36045 1.18738 1.21245 0.94307 0.95205 0.91847 1.20646 0.99066 0.96844 0.97244 1.21350 1.00084 1.00588 0.91134 1.21442 0.97483 0.95358 1.00277 1.21459 0.99554 0.98168 0.96460 1.21285 0.99791 0.99222 0.92832 1.19844 0.97681 0.95309 0.95225 0.92632 0.98705 1.02843 0.84305 0.90176 0.91499 0.88521 0.92111 0.83253 0.87767 0.92041 0.83072 0.83527 0.85434 0.86963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.50 13.29 21.45 0.28 -57.22 16 2 C 0.00 0.11 5.46 84.66 0.46 0.57 16 3 Si 0.97 44.69 29.54 68.60 2.03 46.72 16 4 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 5 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 6 H -0.26 -11.56 7.11 99.48 0.71 -10.86 16 7 C -0.54 -30.93 9.32 25.60 0.24 -30.69 16 8 H 0.07 3.66 7.81 -2.91 -0.02 3.63 16 9 C 0.22 12.00 5.02 85.56 0.43 12.43 16 10 N -0.68 -29.49 4.85 -497.76 -2.41 -31.90 16 11 C 0.12 4.43 2.21 44.50 0.10 4.53 16 12 H 0.03 1.08 6.62 -2.39 -0.02 1.07 16 13 C -0.14 -3.77 5.38 30.20 0.16 -3.61 16 14 C 0.06 1.42 5.87 86.08 0.51 1.93 16 15 N -0.67 -14.88 6.72 -522.47 -3.51 -18.39 16 16 C 0.10 2.54 6.11 85.80 0.52 3.06 16 17 C -0.14 -3.97 5.12 -19.83 -0.10 -4.07 16 18 C -0.11 -2.84 9.69 22.30 0.22 -2.62 16 19 C -0.13 -3.32 10.04 22.29 0.22 -3.10 16 20 C -0.14 -4.39 10.05 22.30 0.22 -4.17 16 21 C -0.11 -4.35 8.88 22.30 0.20 -4.15 16 22 C -0.08 -2.85 4.85 -19.84 -0.10 -2.94 16 23 H 0.26 15.32 8.31 -92.70 -0.77 14.55 16 24 H -0.01 -0.32 7.70 -2.39 -0.02 -0.34 16 25 H -0.05 -2.75 8.06 -2.38 -0.02 -2.77 16 26 H 0.34 13.79 8.01 -89.69 -0.72 13.07 16 27 H 0.08 2.07 7.56 -2.39 -0.02 2.06 16 28 H 0.07 1.84 7.86 -2.39 -0.02 1.82 16 29 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 30 H 0.06 1.50 7.72 -2.39 -0.02 1.48 16 31 H 0.35 7.19 8.50 -89.69 -0.76 6.43 16 32 H 0.10 2.08 7.92 -2.38 -0.02 2.06 16 33 H 0.06 1.74 6.80 -2.39 -0.02 1.72 16 34 H 0.15 2.73 7.98 -2.91 -0.02 2.71 16 35 H 0.15 2.81 8.06 -2.91 -0.02 2.79 16 36 H 0.13 3.60 8.06 -2.91 -0.02 3.57 16 37 H 0.11 4.98 6.91 -2.91 -0.02 4.96 16 Total: -1.00 -66.18 295.72 -0.94 -67.12 By element: Atomic # 1 Polarization: 26.92 SS G_CDS: -0.41 Total: 26.51 kcal Atomic # 6 Polarization: -35.92 SS G_CDS: 3.08 Total: -32.84 kcal Atomic # 7 Polarization: -101.87 SS G_CDS: -5.64 Total: -107.51 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.72 kcal Total: -66.18 -0.94 -67.12 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000168712756.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.408 kcal (2) G-P(sol) polarization free energy of solvation -66.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.118 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds