Wall clock time and date at job start Mon Mar 30 2020 04:20:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46903 * 110.99740 * 2 1 4 4 C 1.50703 * 109.47285 * 288.39098 * 3 2 1 5 5 H 1.07999 * 119.99955 * 0.02562 * 4 3 2 6 6 C 1.37876 * 119.99932 * 180.02562 * 4 3 2 7 7 N 1.31518 * 119.99888 * 0.02562 * 6 4 3 8 8 Si 1.86794 * 120.00156 * 180.02562 * 6 4 3 9 9 H 1.48502 * 109.47123 * 89.99712 * 8 6 4 10 10 H 1.48495 * 109.47304 * 209.99798 * 8 6 4 11 11 H 1.48502 * 109.46745 * 330.00215 * 8 6 4 12 12 C 1.46900 * 111.00182 * 123.95661 * 2 1 3 13 13 H 1.08996 * 110.26752 * 54.92428 * 12 2 1 14 14 C 1.54347 * 110.30033 * 292.85333 * 12 2 1 15 15 C 1.54352 * 102.38813 * 214.62979 * 14 12 2 16 16 H 1.08996 * 110.30214 * 267.42362 * 15 14 12 17 17 N 1.46899 * 110.38551 * 145.30929 * 15 14 12 18 18 C 1.51370 * 105.16756 * 26.34740 * 15 14 12 19 19 C 1.38503 * 130.39059 * 162.81369 * 18 15 14 20 20 C 1.38101 * 120.21905 * 180.27047 * 19 18 15 21 21 C 1.38257 * 119.92998 * 359.41168 * 20 19 18 22 22 C 1.38105 * 119.93202 * 0.60737 * 21 20 19 23 23 C 1.38214 * 109.76352 * 342.80902 * 18 15 14 24 24 H 1.09004 * 109.46657 * 296.04217 * 1 2 3 25 25 H 1.08994 * 109.47315 * 56.04179 * 1 2 3 26 26 H 1.08993 * 109.46997 * 176.04509 * 1 2 3 27 27 H 1.09000 * 109.47429 * 48.39773 * 3 2 1 28 28 H 1.09004 * 109.46585 * 168.39605 * 3 2 1 29 29 H 0.96996 * 120.00029 * 180.02562 * 7 6 4 30 30 H 1.08996 * 110.82358 * 96.40709 * 14 12 2 31 31 H 1.09002 * 110.82288 * 332.84884 * 14 12 2 32 32 H 1.00894 * 111.00458 * 182.75188 * 17 15 14 33 33 H 1.00903 * 111.00190 * 306.71030 * 17 15 14 34 34 H 1.08005 * 119.89014 * 359.97438 * 19 18 15 35 35 H 1.07993 * 120.03560 * 179.72400 * 20 19 18 36 36 H 1.08000 * 120.03311 * 180.29112 * 21 20 19 37 37 H 1.08007 * 119.88643 * 179.66152 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.7569 2.0011 -1.3483 5 1 1.2633 1.4389 -2.1271 6 6 2.1690 3.2950 -1.5874 7 7 2.7705 3.9794 -0.6391 8 14 1.8728 4.0757 -3.2583 9 1 0.5544 4.7592 -3.2586 10 1 2.9435 5.0656 -3.5390 11 1 1.8847 3.0230 -4.3057 12 6 1.9955 -0.7660 1.1375 13 1 1.5823 -1.7746 1.1372 14 6 1.6626 -0.0513 2.4644 15 6 2.9012 -0.3662 3.3300 16 1 2.7316 -1.2672 3.9193 17 7 3.2113 0.7675 4.2112 18 6 4.0277 -0.5880 2.3435 19 6 5.3997 -0.5888 2.5333 20 6 6.2486 -0.8127 1.4673 21 6 5.7279 -1.0490 0.2085 22 6 4.3602 -1.0481 0.0173 23 6 3.5074 -0.8178 1.0839 24 1 -0.3633 0.4512 0.9234 25 1 -0.3633 0.5740 -0.8523 26 1 -0.3633 -1.0252 -0.0709 27 1 1.4886 1.9552 0.7684 28 1 3.0655 1.3499 0.2067 29 1 3.0601 4.8898 -0.8073 30 1 0.7606 -0.4675 2.9130 31 1 1.5602 1.0229 2.3108 32 1 4.0460 0.5896 4.7493 33 1 3.2969 1.6231 3.6832 34 1 5.8070 -0.4090 3.5172 35 1 7.3180 -0.8083 1.6177 36 1 6.3902 -1.2289 -0.6254 37 1 3.9543 -1.2273 -0.9675 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000169251325.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:20:44 Heat of formation + Delta-G solvation = 33.407316 kcal Electronic energy + Delta-G solvation = -18279.035307 eV Core-core repulsion = 15634.804088 eV Total energy + Delta-G solvation = -2644.231219 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.17356 -36.77834 -35.05088 -32.63731 -31.33945 -29.95786 -28.33910 -27.17872 -25.70662 -23.61244 -22.41264 -21.57875 -20.29717 -19.08828 -16.59342 -16.28705 -15.60478 -14.99532 -14.93223 -14.57897 -14.27717 -13.61360 -13.46310 -13.27460 -13.06945 -12.47056 -12.23923 -11.98305 -11.62070 -11.44708 -11.05801 -10.97356 -10.92383 -10.83669 -10.53322 -10.33398 -10.31562 -9.80435 -9.20669 -8.69367 -8.44971 -8.30799 -8.12870 -7.23160 -6.00454 -4.01146 1.72175 1.81091 3.31812 3.38194 3.42325 4.13793 4.43113 4.62641 4.85228 4.98331 5.10649 5.31310 5.34480 5.39297 5.44818 5.60146 5.67933 5.87576 5.94007 6.07032 6.13975 6.22840 6.31810 6.32711 6.49328 6.56813 6.71013 6.77959 6.89659 7.05417 7.32212 7.33404 7.37728 7.40054 7.62384 7.82395 8.12450 8.21135 8.56003 9.06336 9.62420 11.10070 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.021136 B = 0.007891 C = 0.007146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1324.433437 B = 3547.686633 C = 3917.498633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.531 5.531 3 C 0.194 3.806 4 C -0.505 4.505 5 H 0.062 0.938 6 C 0.056 3.944 7 N -0.897 5.897 8 Si 0.895 3.105 9 H -0.282 1.282 10 H -0.287 1.287 11 H -0.273 1.273 12 C 0.118 3.882 13 H 0.084 0.916 14 C -0.148 4.148 15 C 0.137 3.863 16 H 0.088 0.912 17 N -0.839 5.839 18 C -0.142 4.142 19 C -0.112 4.112 20 C -0.127 4.127 21 C -0.123 4.123 22 C -0.078 4.078 23 C -0.059 4.059 24 H 0.015 0.985 25 H 0.074 0.926 26 H 0.045 0.955 27 H -0.007 1.007 28 H 0.034 0.966 29 H 0.260 0.740 30 H 0.071 0.929 31 H 0.090 0.910 32 H 0.335 0.665 33 H 0.348 0.652 34 H 0.110 0.890 35 H 0.116 0.884 36 H 0.119 0.881 37 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.887 -9.702 6.327 11.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 N -0.254 5.254 3 C 0.069 3.931 4 C -0.544 4.544 5 H 0.080 0.920 6 C -0.146 4.146 7 N -0.537 5.537 8 Si 0.723 3.277 9 H -0.208 1.208 10 H -0.213 1.213 11 H -0.198 1.198 12 C 0.008 3.992 13 H 0.102 0.898 14 C -0.188 4.188 15 C 0.026 3.974 16 H 0.105 0.895 17 N -0.367 5.367 18 C -0.144 4.144 19 C -0.130 4.130 20 C -0.145 4.145 21 C -0.141 4.141 22 C -0.097 4.097 23 C -0.060 4.060 24 H 0.033 0.967 25 H 0.092 0.908 26 H 0.064 0.936 27 H 0.010 0.990 28 H 0.052 0.948 29 H 0.070 0.930 30 H 0.090 0.910 31 H 0.108 0.892 32 H 0.147 0.853 33 H 0.162 0.838 34 H 0.128 0.872 35 H 0.134 0.866 36 H 0.137 0.863 37 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 2.390 -9.891 6.270 11.952 hybrid contribution 0.646 1.107 -0.743 1.481 sum 3.035 -8.784 5.527 10.813 Atomic orbital electron populations 1.22205 0.88731 0.99689 1.00655 1.62306 1.06777 1.18308 1.37960 1.19756 0.95453 0.81378 0.96528 1.21162 1.37786 0.97435 0.98015 0.92029 1.24966 0.95409 0.97224 0.96954 1.69958 1.40297 1.10747 1.32687 0.86549 0.77718 0.79081 0.84384 1.20780 1.21326 1.19821 1.21256 0.90595 0.97770 0.89562 0.89847 1.23118 0.96634 1.03440 0.95576 1.20903 0.91659 0.94081 0.90805 0.89457 1.59011 1.43050 1.05336 1.29254 1.21502 0.94606 1.01257 0.97074 1.20385 0.92027 1.02061 0.98537 1.20903 0.98978 1.01472 0.93117 1.21032 0.95127 1.00993 0.96927 1.20706 0.92381 0.97792 0.98786 1.20372 0.95254 0.97286 0.93057 0.96688 0.90773 0.93594 0.98950 0.94821 0.93036 0.91011 0.89157 0.85303 0.83845 0.87228 0.86571 0.86322 0.85640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.68 9.24 60.07 0.55 1.23 16 2 N -0.53 -11.26 4.70 -236.47 -1.11 -12.37 16 3 C 0.19 4.96 3.81 -4.97 -0.02 4.94 16 4 C -0.51 -14.16 8.53 -34.44 -0.29 -14.45 16 5 H 0.06 1.72 7.50 -52.49 -0.39 1.32 16 6 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 7 N -0.90 -26.67 13.29 55.43 0.74 -25.93 16 8 Si 0.89 21.76 29.54 -169.99 -5.02 16.74 16 9 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 10 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 11 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 12 C 0.12 2.13 2.97 -67.83 -0.20 1.93 16 13 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 14 C -0.15 -2.51 5.13 -25.32 -0.13 -2.64 16 15 C 0.14 2.09 4.00 -67.83 -0.27 1.82 16 16 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 17 N -0.84 -12.11 9.30 -4.77 -0.04 -12.16 16 18 C -0.14 -2.34 5.78 -104.20 -0.60 -2.95 16 19 C -0.11 -1.68 9.87 -39.53 -0.39 -2.07 16 20 C -0.13 -1.87 10.05 -39.62 -0.40 -2.27 16 21 C -0.12 -1.95 10.05 -39.62 -0.40 -2.35 16 22 C -0.08 -1.42 9.78 -39.54 -0.39 -1.81 16 23 C -0.06 -1.07 4.17 -104.21 -0.43 -1.51 16 24 H 0.01 0.27 7.37 -51.93 -0.38 -0.11 16 25 H 0.07 1.51 7.17 -51.93 -0.37 1.14 16 26 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 27 H -0.01 -0.20 6.55 -51.93 -0.34 -0.54 16 28 H 0.03 0.94 6.47 -51.93 -0.34 0.61 16 29 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 30 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 31 H 0.09 1.81 5.64 -51.93 -0.29 1.52 16 32 H 0.33 4.10 8.81 -39.29 -0.35 3.75 16 33 H 0.35 5.59 8.83 -39.29 -0.35 5.24 16 34 H 0.11 1.37 7.94 -52.48 -0.42 0.95 16 35 H 0.12 1.40 8.06 -52.49 -0.42 0.97 16 36 H 0.12 1.61 8.06 -52.49 -0.42 1.18 16 37 H 0.13 2.31 8.06 -52.48 -0.42 1.89 16 LS Contribution 298.33 15.07 4.50 4.50 Total: -1.00 -29.93 298.33 -9.34 -39.27 By element: Atomic # 1 Polarization: 13.93 SS G_CDS: -5.32 Total: 8.60 kcal Atomic # 6 Polarization: -15.58 SS G_CDS: -3.07 Total: -18.65 kcal Atomic # 7 Polarization: -50.04 SS G_CDS: -0.42 Total: -50.46 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -29.93 -9.34 -39.27 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000169251325.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.674 kcal (2) G-P(sol) polarization free energy of solvation -29.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.267 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds