Wall clock time and date at job start Mon Mar 30 2020 04:20:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46903 * 110.99740 * 2 1 4 4 C 1.50703 * 109.47285 * 288.39098 * 3 2 1 5 5 H 1.07999 * 119.99955 * 0.02562 * 4 3 2 6 6 C 1.37876 * 119.99932 * 180.02562 * 4 3 2 7 7 N 1.31518 * 119.99888 * 0.02562 * 6 4 3 8 8 Si 1.86794 * 120.00156 * 180.02562 * 6 4 3 9 9 H 1.48502 * 109.47123 * 89.99712 * 8 6 4 10 10 H 1.48495 * 109.47304 * 209.99798 * 8 6 4 11 11 H 1.48502 * 109.46745 * 330.00215 * 8 6 4 12 12 C 1.46900 * 111.00182 * 123.95661 * 2 1 3 13 13 H 1.08996 * 110.26752 * 54.92428 * 12 2 1 14 14 C 1.54347 * 110.30033 * 292.85333 * 12 2 1 15 15 C 1.54352 * 102.38813 * 214.62979 * 14 12 2 16 16 H 1.08996 * 110.30214 * 267.42362 * 15 14 12 17 17 N 1.46899 * 110.38551 * 145.30929 * 15 14 12 18 18 C 1.51370 * 105.16756 * 26.34740 * 15 14 12 19 19 C 1.38503 * 130.39059 * 162.81369 * 18 15 14 20 20 C 1.38101 * 120.21905 * 180.27047 * 19 18 15 21 21 C 1.38257 * 119.92998 * 359.41168 * 20 19 18 22 22 C 1.38105 * 119.93202 * 0.60737 * 21 20 19 23 23 C 1.38214 * 109.76352 * 342.80902 * 18 15 14 24 24 H 1.09004 * 109.46657 * 296.04217 * 1 2 3 25 25 H 1.08994 * 109.47315 * 56.04179 * 1 2 3 26 26 H 1.08993 * 109.46997 * 176.04509 * 1 2 3 27 27 H 1.09000 * 109.47429 * 48.39773 * 3 2 1 28 28 H 1.09004 * 109.46585 * 168.39605 * 3 2 1 29 29 H 0.96996 * 120.00029 * 180.02562 * 7 6 4 30 30 H 1.08996 * 110.82358 * 96.40709 * 14 12 2 31 31 H 1.09002 * 110.82288 * 332.84884 * 14 12 2 32 32 H 1.00894 * 111.00458 * 182.75188 * 17 15 14 33 33 H 1.00903 * 111.00190 * 306.71030 * 17 15 14 34 34 H 1.08005 * 119.89014 * 359.97438 * 19 18 15 35 35 H 1.07993 * 120.03560 * 179.72400 * 20 19 18 36 36 H 1.08000 * 120.03311 * 180.29112 * 21 20 19 37 37 H 1.08007 * 119.88643 * 179.66152 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.7569 2.0011 -1.3483 5 1 1.2633 1.4389 -2.1271 6 6 2.1690 3.2950 -1.5874 7 7 2.7705 3.9794 -0.6391 8 14 1.8728 4.0757 -3.2583 9 1 0.5544 4.7592 -3.2586 10 1 2.9435 5.0656 -3.5390 11 1 1.8847 3.0230 -4.3057 12 6 1.9955 -0.7660 1.1375 13 1 1.5823 -1.7746 1.1372 14 6 1.6626 -0.0513 2.4644 15 6 2.9012 -0.3662 3.3300 16 1 2.7316 -1.2672 3.9193 17 7 3.2113 0.7675 4.2112 18 6 4.0277 -0.5880 2.3435 19 6 5.3997 -0.5888 2.5333 20 6 6.2486 -0.8127 1.4673 21 6 5.7279 -1.0490 0.2085 22 6 4.3602 -1.0481 0.0173 23 6 3.5074 -0.8178 1.0839 24 1 -0.3633 0.4512 0.9234 25 1 -0.3633 0.5740 -0.8523 26 1 -0.3633 -1.0252 -0.0709 27 1 1.4886 1.9552 0.7684 28 1 3.0655 1.3499 0.2067 29 1 3.0601 4.8898 -0.8073 30 1 0.7606 -0.4675 2.9130 31 1 1.5602 1.0229 2.3108 32 1 4.0460 0.5896 4.7493 33 1 3.2969 1.6231 3.6832 34 1 5.8070 -0.4090 3.5172 35 1 7.3180 -0.8083 1.6177 36 1 6.3902 -1.2289 -0.6254 37 1 3.9543 -1.2273 -0.9675 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000169251325.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:20:44 Heat of formation + Delta-G solvation = 12.867112 kcal Electronic energy + Delta-G solvation = -18279.925997 eV Core-core repulsion = 15634.804088 eV Total energy + Delta-G solvation = -2645.121909 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.49758 -38.24730 -36.43276 -34.68321 -32.75751 -31.18532 -29.83196 -29.01107 -27.17903 -25.40896 -23.76231 -23.12003 -21.53809 -20.61593 -18.59993 -17.65774 -16.94209 -16.61637 -16.34988 -16.10613 -15.77562 -15.19048 -15.01554 -14.60155 -14.47937 -13.95578 -13.89025 -13.58407 -13.08105 -12.94231 -12.80094 -12.71598 -12.34150 -12.30839 -12.20080 -12.06215 -11.81539 -11.49828 -11.27708 -10.58888 -9.89364 -9.60220 -9.39633 -8.95202 -8.18275 -6.27404 0.46985 0.54579 1.38647 1.39600 1.50993 2.39600 2.87247 3.13621 3.28070 3.48326 3.64542 3.85671 4.08833 4.16860 4.20832 4.31003 4.32786 4.57116 4.62713 4.68246 4.77411 4.82064 4.94274 5.04386 5.09453 5.11774 5.26166 5.30243 5.42771 5.56173 5.63877 5.65494 5.77132 6.09452 6.12047 6.16571 6.39395 6.51274 6.66471 6.89218 7.41445 8.91771 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.021136 B = 0.007891 C = 0.007146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1324.433437 B = 3547.686633 C = 3917.498633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 N -0.540 5.540 3 C 0.222 3.778 4 C -0.523 4.523 5 H 0.058 0.942 6 C 0.004 3.996 7 N -0.931 5.931 8 Si 0.962 3.038 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.266 1.266 12 C 0.116 3.884 13 H 0.105 0.895 14 C -0.143 4.143 15 C 0.145 3.855 16 H 0.110 0.890 17 N -0.836 5.836 18 C -0.149 4.149 19 C -0.114 4.114 20 C -0.126 4.126 21 C -0.130 4.130 22 C -0.105 4.105 23 C -0.088 4.088 24 H 0.017 0.983 25 H 0.054 0.946 26 H 0.080 0.920 27 H -0.037 1.037 28 H 0.005 0.995 29 H 0.262 0.738 30 H 0.091 0.909 31 H 0.054 0.946 32 H 0.350 0.650 33 H 0.337 0.663 34 H 0.139 0.861 35 H 0.150 0.850 36 H 0.139 0.861 37 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.428 -10.553 6.783 13.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 N -0.263 5.263 3 C 0.096 3.904 4 C -0.561 4.561 5 H 0.076 0.924 6 C -0.194 4.194 7 N -0.572 5.572 8 Si 0.787 3.213 9 H -0.198 1.198 10 H -0.208 1.208 11 H -0.191 1.191 12 C 0.007 3.993 13 H 0.122 0.878 14 C -0.182 4.182 15 C 0.033 3.967 16 H 0.128 0.872 17 N -0.364 5.364 18 C -0.152 4.152 19 C -0.132 4.132 20 C -0.144 4.144 21 C -0.148 4.148 22 C -0.124 4.124 23 C -0.089 4.089 24 H 0.035 0.965 25 H 0.073 0.927 26 H 0.099 0.901 27 H -0.019 1.019 28 H 0.023 0.977 29 H 0.071 0.929 30 H 0.109 0.891 31 H 0.072 0.928 32 H 0.163 0.837 33 H 0.149 0.851 34 H 0.157 0.843 35 H 0.167 0.833 36 H 0.156 0.844 37 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 2.925 -10.771 6.741 13.039 hybrid contribution 0.507 1.321 -0.848 1.649 sum 3.432 -9.450 5.894 11.654 Atomic orbital electron populations 1.22215 0.87408 1.01529 0.99887 1.62184 1.08037 1.15769 1.40275 1.19229 0.93381 0.83363 0.94459 1.21507 1.37685 0.97968 0.98963 0.92388 1.25834 0.95024 0.97778 1.00798 1.70085 1.41204 1.11094 1.34774 0.85487 0.77894 0.78161 0.79726 1.19824 1.20848 1.19086 1.21388 0.90958 0.98113 0.88866 0.87774 1.23008 0.98566 1.00955 0.95670 1.20880 0.90285 0.94955 0.90616 0.87183 1.58997 1.44011 1.04552 1.28812 1.21748 0.95720 1.01083 0.96624 1.20786 0.91464 1.00857 1.00102 1.21331 1.00752 0.99912 0.92356 1.21333 0.94483 1.00567 0.98457 1.20790 0.93748 0.99588 0.98262 1.20543 0.95408 0.98822 0.94118 0.96487 0.92697 0.90136 1.01948 0.97742 0.92903 0.89065 0.92775 0.83651 0.85095 0.84282 0.83278 0.84360 0.87274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.43 9.24 127.69 1.18 2.61 16 2 N -0.54 -23.34 4.70 -902.06 -4.24 -27.58 16 3 C 0.22 11.81 3.81 85.56 0.33 12.14 16 4 C -0.52 -30.08 8.53 25.60 0.22 -29.86 16 5 H 0.06 3.30 7.50 -2.91 -0.02 3.28 16 6 C 0.00 0.21 5.46 84.65 0.46 0.67 16 7 N -0.93 -56.59 13.29 21.45 0.28 -56.30 16 8 Si 0.96 45.02 29.54 68.60 2.03 47.05 16 9 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 10 H -0.28 -12.95 7.11 99.48 0.71 -12.25 16 11 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 12 C 0.12 4.17 2.97 44.84 0.13 4.30 16 13 H 0.10 3.27 8.14 -2.39 -0.02 3.25 16 14 C -0.14 -4.79 5.13 31.51 0.16 -4.63 16 15 C 0.14 4.19 4.00 44.84 0.18 4.37 16 16 H 0.11 2.73 8.14 -2.39 -0.02 2.71 16 17 N -0.84 -23.10 9.30 -168.99 -1.57 -24.67 16 18 C -0.15 -4.77 5.78 -19.59 -0.11 -4.89 16 19 C -0.11 -3.18 9.87 22.30 0.22 -2.96 16 20 C -0.13 -3.44 10.05 22.24 0.22 -3.22 16 21 C -0.13 -4.05 10.05 22.24 0.22 -3.83 16 22 C -0.11 -3.89 9.78 22.30 0.22 -3.68 16 23 C -0.09 -3.23 4.17 -19.60 -0.08 -3.31 16 24 H 0.02 0.62 7.37 -2.39 -0.02 0.60 16 25 H 0.05 2.26 7.17 -2.39 -0.02 2.25 16 26 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 27 H -0.04 -2.16 6.55 -2.39 -0.02 -2.17 16 28 H 0.00 0.26 6.47 -2.38 -0.02 0.25 16 29 H 0.26 15.04 8.31 -92.71 -0.77 14.27 16 30 H 0.09 2.64 8.14 -2.39 -0.02 2.62 16 31 H 0.05 2.24 5.64 -2.39 -0.01 2.23 16 32 H 0.35 7.79 8.81 -89.70 -0.79 7.00 16 33 H 0.34 10.84 8.83 -89.69 -0.79 10.04 16 34 H 0.14 2.99 7.94 -2.91 -0.02 2.97 16 35 H 0.15 3.05 8.06 -2.91 -0.02 3.02 16 36 H 0.14 3.59 8.06 -2.91 -0.02 3.57 16 37 H 0.11 4.22 8.06 -2.91 -0.02 4.20 16 Total: -1.00 -65.78 298.33 -0.66 -66.44 By element: Atomic # 1 Polarization: 27.84 SS G_CDS: -0.50 Total: 27.34 kcal Atomic # 6 Polarization: -35.62 SS G_CDS: 3.35 Total: -32.27 kcal Atomic # 7 Polarization: -103.03 SS G_CDS: -5.53 Total: -108.56 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 2.03 Total: 47.05 kcal Total: -65.78 -0.66 -66.44 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000169251325.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.307 kcal (2) G-P(sol) polarization free energy of solvation -65.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.440 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds