Wall clock time and date at job start Mon Mar 30 2020 04:20:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46898 * 111.00443 * 2 1 4 4 C 1.50706 * 109.46563 * 66.04606 * 3 2 1 5 5 H 1.07998 * 120.00168 * 359.97438 * 4 3 2 6 6 C 1.37880 * 119.99248 * 180.02562 * 4 3 2 7 7 N 1.31524 * 119.99474 * 180.02562 * 6 4 3 8 8 Si 1.86801 * 120.00536 * 0.02562 * 6 4 3 9 9 H 1.48501 * 109.46849 * 89.99746 * 8 6 4 10 10 H 1.48499 * 109.47055 * 210.00004 * 8 6 4 11 11 H 1.48495 * 109.46765 * 330.00048 * 8 6 4 12 12 C 1.46906 * 110.99793 * 236.04672 * 2 1 3 13 13 H 1.08997 * 110.26928 * 178.25578 * 12 2 1 14 14 C 1.54350 * 110.30486 * 300.32997 * 12 2 1 15 15 C 1.54343 * 102.38920 * 92.57383 * 14 12 2 16 16 H 1.09004 * 110.30170 * 267.42024 * 15 14 12 17 17 N 1.46900 * 110.30088 * 145.27380 * 15 14 12 18 18 C 1.51366 * 105.17445 * 26.34647 * 15 14 12 19 19 C 1.38500 * 130.39793 * 162.80067 * 18 15 14 20 20 C 1.38693 * 120.05302 * 180.12051 * 19 18 15 21 21 C 1.38249 * 120.00392 * 359.93569 * 20 19 18 22 22 C 1.38101 * 119.93424 * 0.02562 * 21 20 19 23 23 C 1.38451 * 109.79193 * 342.83834 * 18 15 14 24 24 H 1.09002 * 109.47401 * 183.95136 * 1 2 3 25 25 H 1.09001 * 109.46874 * 63.95149 * 1 2 3 26 26 H 1.09004 * 109.46970 * 303.95282 * 1 2 3 27 27 H 1.08994 * 109.47410 * 186.04624 * 3 2 1 28 28 H 1.08999 * 109.47216 * 306.04953 * 3 2 1 29 29 H 0.96999 * 119.99619 * 179.97438 * 7 6 4 30 30 H 1.08994 * 110.81943 * 210.80207 * 14 12 2 31 31 H 1.08999 * 110.81858 * 334.34913 * 14 12 2 32 32 H 1.00904 * 110.99783 * 180.02562 * 17 15 14 33 33 H 1.00895 * 110.99609 * 303.94915 * 17 15 14 34 34 H 1.07999 * 119.88916 * 0.02562 * 19 18 15 35 35 H 1.08002 * 119.96364 * 179.97438 * 20 19 18 36 36 H 1.08009 * 120.03075 * 180.02562 * 21 20 19 37 37 H 1.08011 * 119.89070 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3714 0.0000 4 6 1.6370 2.0470 1.2985 5 1 1.0740 1.5114 2.0485 6 6 2.0270 3.3494 1.5285 7 7 1.7145 3.9389 2.6620 8 14 2.9990 4.2765 0.2305 9 1 2.0615 4.9802 -0.6812 10 1 3.8857 5.2681 0.8904 11 1 3.8224 3.3181 -0.5497 12 6 1.9954 -0.7660 -1.1377 13 1 3.0849 -0.7325 -1.1437 14 6 1.5049 -2.2280 -1.0719 15 6 0.2200 -2.1849 -1.9258 16 1 -0.6482 -1.9983 -1.2937 17 7 0.0544 -3.4456 -2.6616 18 6 0.4237 -1.0365 -2.8906 19 6 -0.2315 -0.7292 -4.0715 20 6 0.1371 0.3928 -4.7987 21 6 1.1584 1.2063 -4.3443 22 6 1.8111 0.9002 -3.1664 23 6 1.4459 -0.2197 -2.4380 24 1 -0.3634 -1.0252 0.0708 25 1 -0.3633 0.4513 -0.9233 26 1 -0.3633 0.5740 0.8525 27 1 3.0798 1.3443 -0.1082 28 1 1.5612 1.9273 -0.8309 29 1 1.9892 4.8549 2.8240 30 1 2.2394 -2.9032 -1.5107 31 1 1.2783 -2.5148 -0.0450 32 1 -0.7830 -3.4286 -3.2242 33 1 0.8660 -3.6430 -3.2276 34 1 -1.0288 -1.3656 -4.4259 35 1 -0.3745 0.6308 -5.7196 36 1 1.4455 2.0804 -4.9101 37 1 2.6086 1.5365 -2.8118 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000169251408.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:20:46 Heat of formation + Delta-G solvation = 40.195914 kcal Electronic energy + Delta-G solvation = -18310.360399 eV Core-core repulsion = 15666.423556 eV Total energy + Delta-G solvation = -2643.936843 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.59500 -36.83376 -35.27025 -32.67258 -31.32395 -30.28823 -28.88594 -27.48773 -26.38310 -23.48757 -22.55328 -21.28788 -20.33403 -19.51874 -16.93966 -16.60924 -15.95291 -15.38210 -15.14815 -14.76222 -14.40912 -13.95721 -13.66820 -13.36586 -13.16481 -12.52187 -12.32707 -12.16983 -11.83113 -11.57502 -11.39294 -11.28722 -11.05996 -10.91126 -10.62223 -10.50146 -10.13315 -9.83530 -9.29946 -8.94976 -8.68816 -8.56694 -8.42486 -7.43955 -6.06070 -4.02945 1.44289 1.48858 3.26136 3.33796 3.34464 3.84514 4.39689 4.40499 4.58669 4.76302 4.91401 5.05214 5.10426 5.23156 5.27672 5.42875 5.46351 5.59562 5.78453 5.89130 6.02763 6.06117 6.15013 6.21953 6.30994 6.38950 6.53182 6.59176 6.70715 6.74520 6.87449 6.99499 7.07314 7.10358 7.34452 7.58092 7.86857 8.01237 8.64226 9.02574 9.55644 11.07163 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.026206 B = 0.007854 C = 0.006590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1068.219555 B = 3564.228303 C = 4248.095814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.508 5.508 3 C 0.160 3.840 4 C -0.508 4.508 5 H 0.081 0.919 6 C 0.069 3.931 7 N -0.900 5.900 8 Si 0.873 3.127 9 H -0.278 1.278 10 H -0.285 1.285 11 H -0.267 1.267 12 C 0.112 3.888 13 H 0.086 0.914 14 C -0.101 4.101 15 C 0.125 3.875 16 H 0.101 0.899 17 N -0.836 5.836 18 C -0.132 4.132 19 C -0.112 4.112 20 C -0.124 4.124 21 C -0.121 4.121 22 C -0.097 4.097 23 C -0.106 4.106 24 H 0.054 0.946 25 H 0.016 0.984 26 H 0.078 0.922 27 H 0.026 0.974 28 H -0.010 1.010 29 H 0.263 0.737 30 H 0.075 0.925 31 H 0.092 0.908 32 H 0.337 0.663 33 H 0.339 0.661 34 H 0.113 0.887 35 H 0.119 0.881 36 H 0.120 0.880 37 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.085 -10.313 -14.597 17.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.230 5.230 3 C 0.034 3.966 4 C -0.547 4.547 5 H 0.099 0.901 6 C -0.133 4.133 7 N -0.539 5.539 8 Si 0.700 3.300 9 H -0.204 1.204 10 H -0.211 1.211 11 H -0.192 1.192 12 C 0.002 3.998 13 H 0.104 0.896 14 C -0.139 4.139 15 C 0.014 3.986 16 H 0.118 0.882 17 N -0.363 5.363 18 C -0.134 4.134 19 C -0.130 4.130 20 C -0.143 4.143 21 C -0.139 4.139 22 C -0.115 4.115 23 C -0.109 4.109 24 H 0.072 0.928 25 H 0.034 0.966 26 H 0.097 0.903 27 H 0.044 0.956 28 H 0.007 0.993 29 H 0.073 0.927 30 H 0.093 0.907 31 H 0.111 0.889 32 H 0.150 0.850 33 H 0.152 0.848 34 H 0.131 0.869 35 H 0.137 0.863 36 H 0.138 0.862 37 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -1.948 -10.736 -13.280 17.187 hybrid contribution 0.275 1.958 -2.364 3.082 sum -1.673 -8.778 -15.645 18.017 Atomic orbital electron populations 1.22445 0.88435 1.00200 1.00995 1.62406 1.07599 1.16744 1.36226 1.20230 0.95039 0.84173 0.97198 1.21039 1.35500 0.97208 1.00913 0.90096 1.24884 0.95769 0.97335 0.95273 1.69895 1.46925 1.13240 1.23864 0.86899 0.80669 0.80135 0.82306 1.20362 1.21102 1.19183 1.21425 0.99634 0.93191 0.85538 0.89575 1.22355 0.95380 0.95196 1.00997 1.21309 0.99987 0.84384 0.92882 0.88156 1.59021 1.08012 1.33889 1.35407 1.21611 0.96974 0.98915 0.95935 1.20618 0.99763 0.97753 0.94884 1.21079 0.97992 0.95311 0.99874 1.21043 0.96743 0.99544 0.96561 1.20807 1.00081 0.96369 0.94277 1.21520 0.97249 0.95112 0.97002 0.92756 0.96574 0.90286 0.95577 0.99267 0.92677 0.90666 0.88945 0.85036 0.84836 0.86932 0.86314 0.86173 0.86315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.53 7.97 60.07 0.48 1.01 16 2 N -0.51 -10.54 4.74 -236.47 -1.12 -11.66 16 3 C 0.16 3.86 3.26 -4.97 -0.02 3.85 16 4 C -0.51 -14.48 9.01 -34.44 -0.31 -14.79 16 5 H 0.08 2.50 7.37 -52.49 -0.39 2.12 16 6 C 0.07 2.00 5.47 -17.81 -0.10 1.90 16 7 N -0.90 -27.68 13.96 55.43 0.77 -26.90 16 8 Si 0.87 21.58 27.47 -169.99 -4.67 16.91 16 9 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 10 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 11 H -0.27 -6.29 6.54 56.52 0.37 -5.92 16 12 C 0.11 1.91 3.12 -67.83 -0.21 1.70 16 13 H 0.09 1.47 8.05 -51.93 -0.42 1.05 16 14 C -0.10 -1.42 5.81 -25.32 -0.15 -1.57 16 15 C 0.13 1.64 3.20 -67.83 -0.22 1.42 16 16 H 0.10 1.39 6.03 -51.93 -0.31 1.08 16 17 N -0.84 -8.89 9.28 -4.77 -0.04 -8.93 16 18 C -0.13 -1.88 4.95 -104.12 -0.52 -2.39 16 19 C -0.11 -1.44 9.99 -39.32 -0.39 -1.83 16 20 C -0.12 -1.59 10.07 -39.41 -0.40 -1.99 16 21 C -0.12 -1.72 10.05 -39.63 -0.40 -2.12 16 22 C -0.10 -1.60 8.75 -39.54 -0.35 -1.95 16 23 C -0.11 -1.75 4.08 -104.12 -0.42 -2.17 16 24 H 0.05 0.91 5.09 -51.93 -0.26 0.64 16 25 H 0.02 0.32 6.57 -51.93 -0.34 -0.03 16 26 H 0.08 1.72 6.76 -51.93 -0.35 1.37 16 27 H 0.03 0.64 7.07 -51.93 -0.37 0.28 16 28 H -0.01 -0.25 6.03 -51.93 -0.31 -0.57 16 29 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 30 H 0.07 0.94 7.98 -51.93 -0.41 0.53 16 31 H 0.09 1.35 7.82 -51.93 -0.41 0.95 16 32 H 0.34 3.07 9.02 -39.29 -0.35 2.72 16 33 H 0.34 3.33 8.88 -39.29 -0.35 2.99 16 34 H 0.11 1.16 8.06 -52.49 -0.42 0.74 16 35 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 36 H 0.12 1.45 8.06 -52.48 -0.42 1.03 16 37 H 0.12 2.03 7.85 -52.48 -0.41 1.62 16 LS Contribution 288.89 15.07 4.35 4.35 Total: -1.00 -30.68 288.89 -8.83 -39.51 By element: Atomic # 1 Polarization: 10.77 SS G_CDS: -5.12 Total: 5.65 kcal Atomic # 6 Polarization: -15.93 SS G_CDS: -2.99 Total: -18.92 kcal Atomic # 7 Polarization: -47.10 SS G_CDS: -0.39 Total: -47.50 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -4.67 Total: 16.91 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -30.68 -8.83 -39.51 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000169251408.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.704 kcal (2) G-P(sol) polarization free energy of solvation -30.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.508 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds