Wall clock time and date at job start Mon Mar 30 2020 04:20:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46898 * 111.00443 * 2 1 4 4 C 1.50706 * 109.46563 * 66.04606 * 3 2 1 5 5 H 1.07998 * 120.00168 * 359.97438 * 4 3 2 6 6 C 1.37880 * 119.99248 * 180.02562 * 4 3 2 7 7 N 1.31524 * 119.99474 * 180.02562 * 6 4 3 8 8 Si 1.86801 * 120.00536 * 0.02562 * 6 4 3 9 9 H 1.48501 * 109.46849 * 89.99746 * 8 6 4 10 10 H 1.48499 * 109.47055 * 210.00004 * 8 6 4 11 11 H 1.48495 * 109.46765 * 330.00048 * 8 6 4 12 12 C 1.46906 * 110.99793 * 236.04672 * 2 1 3 13 13 H 1.08997 * 110.26928 * 178.25578 * 12 2 1 14 14 C 1.54350 * 110.30486 * 300.32997 * 12 2 1 15 15 C 1.54343 * 102.38920 * 92.57383 * 14 12 2 16 16 H 1.09004 * 110.30170 * 267.42024 * 15 14 12 17 17 N 1.46900 * 110.30088 * 145.27380 * 15 14 12 18 18 C 1.51366 * 105.17445 * 26.34647 * 15 14 12 19 19 C 1.38500 * 130.39793 * 162.80067 * 18 15 14 20 20 C 1.38693 * 120.05302 * 180.12051 * 19 18 15 21 21 C 1.38249 * 120.00392 * 359.93569 * 20 19 18 22 22 C 1.38101 * 119.93424 * 0.02562 * 21 20 19 23 23 C 1.38451 * 109.79193 * 342.83834 * 18 15 14 24 24 H 1.09002 * 109.47401 * 183.95136 * 1 2 3 25 25 H 1.09001 * 109.46874 * 63.95149 * 1 2 3 26 26 H 1.09004 * 109.46970 * 303.95282 * 1 2 3 27 27 H 1.08994 * 109.47410 * 186.04624 * 3 2 1 28 28 H 1.08999 * 109.47216 * 306.04953 * 3 2 1 29 29 H 0.96999 * 119.99619 * 179.97438 * 7 6 4 30 30 H 1.08994 * 110.81943 * 210.80207 * 14 12 2 31 31 H 1.08999 * 110.81858 * 334.34913 * 14 12 2 32 32 H 1.00904 * 110.99783 * 180.02562 * 17 15 14 33 33 H 1.00895 * 110.99609 * 303.94915 * 17 15 14 34 34 H 1.07999 * 119.88916 * 0.02562 * 19 18 15 35 35 H 1.08002 * 119.96364 * 179.97438 * 20 19 18 36 36 H 1.08009 * 120.03075 * 180.02562 * 21 20 19 37 37 H 1.08011 * 119.89070 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3714 0.0000 4 6 1.6370 2.0470 1.2985 5 1 1.0740 1.5114 2.0485 6 6 2.0270 3.3494 1.5285 7 7 1.7145 3.9389 2.6620 8 14 2.9990 4.2765 0.2305 9 1 2.0615 4.9802 -0.6812 10 1 3.8857 5.2681 0.8904 11 1 3.8224 3.3181 -0.5497 12 6 1.9954 -0.7660 -1.1377 13 1 3.0849 -0.7325 -1.1437 14 6 1.5049 -2.2280 -1.0719 15 6 0.2200 -2.1849 -1.9258 16 1 -0.6482 -1.9983 -1.2937 17 7 0.0544 -3.4456 -2.6616 18 6 0.4237 -1.0365 -2.8906 19 6 -0.2315 -0.7292 -4.0715 20 6 0.1371 0.3928 -4.7987 21 6 1.1584 1.2063 -4.3443 22 6 1.8111 0.9002 -3.1664 23 6 1.4459 -0.2197 -2.4380 24 1 -0.3634 -1.0252 0.0708 25 1 -0.3633 0.4513 -0.9233 26 1 -0.3633 0.5740 0.8525 27 1 3.0798 1.3443 -0.1082 28 1 1.5612 1.9273 -0.8309 29 1 1.9892 4.8549 2.8240 30 1 2.2394 -2.9032 -1.5107 31 1 1.2783 -2.5148 -0.0450 32 1 -0.7830 -3.4286 -3.2242 33 1 0.8660 -3.6430 -3.2276 34 1 -1.0288 -1.3656 -4.4259 35 1 -0.3745 0.6308 -5.7196 36 1 1.4455 2.0804 -4.9101 37 1 2.6086 1.5365 -2.8118 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000169251408.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:20:46 Heat of formation + Delta-G solvation = 17.783056 kcal Electronic energy + Delta-G solvation = -18311.332294 eV Core-core repulsion = 15666.423556 eV Total energy + Delta-G solvation = -2644.908737 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.78173 -38.14144 -36.54228 -34.67804 -32.72227 -31.33037 -30.23546 -29.18625 -27.82132 -25.01025 -23.67110 -22.90792 -21.46723 -20.92865 -18.98976 -17.83441 -17.16798 -16.53233 -16.39846 -16.25264 -15.95204 -15.44212 -15.02702 -14.69406 -14.49285 -14.27351 -13.79267 -13.45876 -13.22731 -13.13606 -12.83148 -12.68658 -12.46031 -12.43297 -11.98413 -11.84768 -11.78243 -11.70152 -11.44268 -10.82673 -9.91334 -9.74610 -9.48571 -9.07789 -8.31542 -6.34182 0.36026 0.39378 1.28708 1.30482 1.41116 2.30082 2.74370 3.01339 3.22676 3.36059 3.61850 3.81239 4.02726 4.09997 4.12618 4.27364 4.34971 4.42691 4.56882 4.61321 4.68752 4.74937 4.84938 4.94961 5.02231 5.04866 5.14826 5.16793 5.25892 5.47179 5.51197 5.53510 5.63063 5.95840 6.04496 6.19076 6.30954 6.59960 6.61540 6.71794 7.28984 8.85140 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.026206 B = 0.007854 C = 0.006590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1068.219555 B = 3564.228303 C = 4248.095814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 N -0.523 5.523 3 C 0.176 3.824 4 C -0.516 4.516 5 H 0.040 0.960 6 C 0.010 3.990 7 N -0.946 5.946 8 Si 0.941 3.059 9 H -0.269 1.269 10 H -0.278 1.278 11 H -0.250 1.250 12 C 0.108 3.892 13 H 0.078 0.922 14 C -0.094 4.094 15 C 0.135 3.865 16 H 0.094 0.906 17 N -0.830 5.830 18 C -0.131 4.131 19 C -0.110 4.110 20 C -0.119 4.119 21 C -0.129 4.129 22 C -0.124 4.124 23 C -0.132 4.132 24 H 0.084 0.916 25 H 0.013 0.987 26 H 0.044 0.956 27 H 0.023 0.977 28 H -0.012 1.012 29 H 0.267 0.733 30 H 0.094 0.906 31 H 0.085 0.915 32 H 0.350 0.650 33 H 0.347 0.653 34 H 0.144 0.856 35 H 0.152 0.848 36 H 0.138 0.862 37 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.457 -11.415 -17.684 21.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 N -0.245 5.245 3 C 0.049 3.951 4 C -0.555 4.555 5 H 0.058 0.942 6 C -0.187 4.187 7 N -0.587 5.587 8 Si 0.765 3.235 9 H -0.194 1.194 10 H -0.204 1.204 11 H -0.174 1.174 12 C -0.001 4.001 13 H 0.097 0.903 14 C -0.132 4.132 15 C 0.023 3.977 16 H 0.111 0.889 17 N -0.359 5.359 18 C -0.134 4.134 19 C -0.128 4.128 20 C -0.137 4.137 21 C -0.147 4.147 22 C -0.143 4.143 23 C -0.134 4.134 24 H 0.102 0.898 25 H 0.032 0.968 26 H 0.063 0.937 27 H 0.041 0.959 28 H 0.005 0.995 29 H 0.076 0.924 30 H 0.112 0.888 31 H 0.104 0.896 32 H 0.164 0.836 33 H 0.160 0.840 34 H 0.162 0.838 35 H 0.170 0.830 36 H 0.156 0.844 37 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -2.326 -11.871 -16.388 20.369 hybrid contribution 0.332 2.219 -1.404 2.647 sum -1.994 -9.652 -17.792 20.340 Atomic orbital electron populations 1.22312 0.87845 1.01402 0.99222 1.62281 1.08200 1.14883 1.39156 1.19885 0.94701 0.85991 0.94504 1.21290 1.34790 0.97539 1.01864 0.94207 1.25792 0.96947 0.98377 0.97591 1.70045 1.48577 1.13881 1.26194 0.85803 0.79386 0.78885 0.79471 1.19448 1.20369 1.17387 1.21476 0.99240 0.94445 0.84944 0.90336 1.22309 0.96527 0.93239 1.01148 1.21097 0.98822 0.85109 0.92673 0.88853 1.58951 1.09016 1.32016 1.35917 1.21796 0.96310 0.98713 0.96607 1.21017 0.99855 0.97976 0.93965 1.21504 0.97013 0.94493 1.00695 1.21318 0.96944 1.00508 0.95885 1.20894 1.00766 0.96775 0.95817 1.21449 0.98787 0.96147 0.97047 0.89765 0.96805 0.93676 0.95915 0.99469 0.92406 0.88788 0.89639 0.83638 0.83993 0.83802 0.83050 0.84403 0.88032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.59 7.97 127.69 1.02 2.61 16 2 N -0.52 -22.08 4.74 -902.04 -4.27 -26.35 16 3 C 0.18 8.70 3.26 85.56 0.28 8.98 16 4 C -0.52 -30.59 9.01 25.60 0.23 -30.36 16 5 H 0.04 2.62 7.37 -2.91 -0.02 2.59 16 6 C 0.01 0.61 5.47 84.65 0.46 1.08 16 7 N -0.95 -60.04 13.96 21.45 0.30 -59.75 16 8 Si 0.94 45.00 27.47 68.60 1.88 46.89 16 9 H -0.27 -12.45 7.11 99.48 0.71 -11.75 16 10 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 11 H -0.25 -11.17 6.54 99.48 0.65 -10.52 16 12 C 0.11 3.64 3.12 44.84 0.14 3.78 16 13 H 0.08 2.70 8.05 -2.39 -0.02 2.68 16 14 C -0.09 -2.50 5.81 31.51 0.18 -2.31 16 15 C 0.13 3.17 3.20 44.84 0.14 3.31 16 16 H 0.09 2.36 6.03 -2.38 -0.01 2.34 16 17 N -0.83 -14.78 9.28 -169.00 -1.57 -16.34 16 18 C -0.13 -3.42 4.95 -19.54 -0.10 -3.51 16 19 C -0.11 -2.40 9.99 22.44 0.22 -2.18 16 20 C -0.12 -2.60 10.07 22.38 0.23 -2.37 16 21 C -0.13 -3.36 10.05 22.24 0.22 -3.14 16 22 C -0.12 -3.99 8.75 22.30 0.20 -3.80 16 23 C -0.13 -4.20 4.08 -19.54 -0.08 -4.28 16 24 H 0.08 2.77 5.09 -2.39 -0.01 2.76 16 25 H 0.01 0.54 6.57 -2.39 -0.02 0.52 16 26 H 0.04 2.06 6.76 -2.38 -0.02 2.04 16 27 H 0.02 1.13 7.07 -2.39 -0.02 1.11 16 28 H -0.01 -0.61 6.03 -2.39 -0.01 -0.63 16 29 H 0.27 15.77 8.31 -92.71 -0.77 15.00 16 30 H 0.09 2.14 7.98 -2.39 -0.02 2.12 16 31 H 0.09 2.39 7.82 -2.39 -0.02 2.38 16 32 H 0.35 4.96 9.02 -89.69 -0.81 4.15 16 33 H 0.35 5.56 8.88 -89.70 -0.80 4.76 16 34 H 0.14 2.22 8.06 -2.91 -0.02 2.20 16 35 H 0.15 2.30 8.06 -2.91 -0.02 2.27 16 36 H 0.14 2.99 8.06 -2.91 -0.02 2.97 16 37 H 0.10 3.50 7.85 -2.90 -0.02 3.48 16 Total: -1.00 -68.40 288.89 -1.08 -69.48 By element: Atomic # 1 Polarization: 18.83 SS G_CDS: -0.57 Total: 18.26 kcal Atomic # 6 Polarization: -35.34 SS G_CDS: 3.15 Total: -32.19 kcal Atomic # 7 Polarization: -96.90 SS G_CDS: -5.54 Total: -102.44 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 1.88 Total: 46.89 kcal Total: -68.40 -1.08 -69.48 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000169251408.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.265 kcal (2) G-P(sol) polarization free energy of solvation -68.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.482 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds