Wall clock time and date at job start Mon Mar 30 2020 03:49:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38131 * 120.03493 * 2 1 4 4 C 1.38265 * 120.07254 * 180.27507 * 3 2 1 5 5 C 1.38310 * 120.15092 * 359.75164 * 4 3 2 6 6 C 1.38091 * 120.07326 * 359.97438 * 5 4 3 7 7 C 1.38893 * 120.03920 * 179.75314 * 2 1 3 8 8 N 1.39672 * 120.07331 * 359.97438 * 7 2 1 9 9 C 1.46951 * 111.00010 * 292.84900 * 8 7 2 10 10 C 1.53056 * 109.36597 * 176.81233 * 9 8 7 11 11 N 1.46958 * 109.36294 * 58.40003 * 10 9 8 12 12 C 1.46959 * 110.88025 * 300.68334 * 11 10 9 13 13 H 1.09004 * 109.48725 * 299.35124 * 12 11 10 14 14 C 1.50699 * 109.49096 * 179.28697 * 12 11 10 15 15 H 1.07991 * 120.00440 * 239.99613 * 14 12 11 16 16 C 1.37887 * 119.99809 * 59.99751 * 14 12 11 17 17 N 1.31513 * 119.99928 * 0.02562 * 16 14 12 18 18 Si 1.86795 * 119.99789 * 179.97438 * 16 14 12 19 19 H 1.48500 * 109.46979 * 60.00242 * 18 16 14 20 20 H 1.48507 * 109.47006 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.47505 * 299.99924 * 18 16 14 22 22 C 1.46958 * 110.99860 * 169.04913 * 8 7 2 23 23 H 1.08997 * 109.46615 * 274.46478 * 1 2 3 24 24 H 1.08994 * 109.47503 * 34.46869 * 1 2 3 25 25 H 1.08997 * 109.46851 * 154.46889 * 1 2 3 26 26 H 1.08000 * 119.96428 * 0.02916 * 3 2 1 27 27 H 1.07995 * 119.92528 * 179.76837 * 4 3 2 28 28 H 1.07994 * 119.96708 * 179.97438 * 5 4 3 29 29 H 1.07995 * 120.03288 * 180.02562 * 6 5 4 30 30 H 1.09000 * 109.49279 * 56.84205 * 9 8 7 31 31 H 1.09004 * 109.48867 * 296.78036 * 9 8 7 32 32 H 1.09001 * 109.48642 * 298.43635 * 10 9 8 33 33 H 1.08999 * 109.50944 * 178.37285 * 10 9 8 34 34 H 1.00897 * 111.00468 * 64.54544 * 11 10 9 35 35 H 0.96998 * 120.00007 * 180.02562 * 17 16 14 36 36 H 1.09006 * 109.48730 * 303.15273 * 22 8 7 37 37 H 1.09002 * 109.48787 * 63.21852 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1958 0.0000 4 6 3.5811 1.1967 -0.0057 5 6 4.2766 0.0012 -0.0063 6 6 3.5916 -1.1978 -0.0006 7 6 2.2023 -1.2024 0.0052 8 7 1.5063 -2.4133 0.0109 9 6 0.7825 -2.5987 1.2763 10 6 -0.0285 -3.8951 1.2119 11 7 0.8768 -5.0241 0.9560 12 6 1.6007 -4.8386 -0.3094 13 1 0.8871 -4.7806 -1.1314 14 6 2.5310 -6.0031 -0.5319 15 1 3.5942 -5.8357 -0.6204 16 6 2.0247 -7.2824 -0.6224 17 7 0.7299 -7.4863 -0.5152 18 14 3.1778 -8.7258 -0.8989 19 1 4.1508 -8.8034 0.2203 20 1 2.3907 -9.9836 -0.9593 21 1 3.9085 -8.5378 -2.1780 22 6 2.4117 -3.5423 -0.2449 23 1 -0.3632 0.0800 1.0245 24 1 -0.3634 0.8472 -0.5816 25 1 -0.3633 -0.9273 -0.4429 26 1 1.6584 2.1311 0.0005 27 1 4.1192 2.1331 -0.0095 28 1 5.3565 0.0054 -0.0112 29 1 4.1353 -2.1309 -0.0007 30 1 0.1097 -1.7564 1.4373 31 1 1.4961 -2.6567 2.0983 32 1 -0.7605 -3.8264 0.4071 33 1 -0.5436 -4.0498 2.1599 34 1 1.5184 -5.1543 1.7237 35 1 0.3738 -8.3863 -0.5785 36 1 2.9265 -3.3878 -1.1933 37 1 3.1438 -3.6109 0.5597 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000221057904.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:49:25 Heat of formation + Delta-G solvation = 40.247661 kcal Electronic energy + Delta-G solvation = -18079.131889 eV Core-core repulsion = 15435.197290 eV Total energy + Delta-G solvation = -2643.934599 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.08347 -37.53109 -34.02775 -32.66724 -32.29145 -29.95519 -29.06705 -26.82201 -25.22720 -24.41627 -22.04186 -21.48705 -20.55909 -19.34993 -17.18251 -16.12077 -15.44795 -15.22858 -14.55006 -14.29564 -14.04276 -13.72970 -13.51632 -13.49645 -13.11386 -12.85266 -12.27628 -12.01532 -11.95106 -11.74320 -11.18406 -11.02083 -10.91015 -10.77056 -10.60939 -10.50757 -10.15598 -9.73911 -9.25258 -8.92684 -8.55410 -8.42643 -7.49352 -6.86853 -5.90046 -4.05565 1.57360 1.60932 3.34064 3.39301 3.41149 3.89779 4.28560 4.50578 5.03398 5.08758 5.22708 5.25233 5.42077 5.51859 5.60691 5.67107 5.72507 5.79242 5.88796 5.93364 6.02307 6.06305 6.17620 6.25657 6.32439 6.42134 6.58392 6.69107 6.70447 6.75131 6.75979 7.08949 7.30549 7.63804 7.77343 7.88165 8.18518 8.54724 8.88147 9.08432 9.63484 11.14418 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.033910 B = 0.006142 C = 0.005406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.527415 B = 4557.364139 C = 5178.471344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.104 4.104 3 C -0.105 4.105 4 C -0.152 4.152 5 C -0.105 4.105 6 C -0.168 4.168 7 C 0.119 3.881 8 N -0.488 5.488 9 C 0.019 3.981 10 C 0.057 3.943 11 N -0.648 5.648 12 C 0.228 3.772 13 H 0.047 0.953 14 C -0.543 4.543 15 H 0.053 0.947 16 C 0.085 3.915 17 N -0.845 5.845 18 Si 0.885 3.115 19 H -0.278 1.278 20 H -0.287 1.287 21 H -0.278 1.278 22 C 0.026 3.974 23 H 0.062 0.938 24 H 0.058 0.942 25 H 0.080 0.920 26 H 0.117 0.883 27 H 0.115 0.885 28 H 0.116 0.884 29 H 0.128 0.872 30 H 0.075 0.925 31 H 0.029 0.971 32 H 0.070 0.930 33 H 0.062 0.938 34 H 0.319 0.681 35 H 0.257 0.743 36 H 0.071 0.929 37 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.455 14.099 3.026 14.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.107 4.107 3 C -0.124 4.124 4 C -0.171 4.171 5 C -0.123 4.123 6 C -0.188 4.188 7 C 0.021 3.979 8 N -0.203 5.203 9 C -0.108 4.108 10 C -0.074 4.074 11 N -0.275 5.275 12 C 0.120 3.880 13 H 0.065 0.935 14 C -0.582 4.582 15 H 0.072 0.928 16 C -0.122 4.122 17 N -0.479 5.479 18 Si 0.712 3.288 19 H -0.204 1.204 20 H -0.213 1.213 21 H -0.204 1.204 22 C -0.102 4.102 23 H 0.080 0.920 24 H 0.077 0.923 25 H 0.099 0.901 26 H 0.135 0.865 27 H 0.133 0.867 28 H 0.134 0.866 29 H 0.145 0.855 30 H 0.093 0.907 31 H 0.048 0.952 32 H 0.089 0.911 33 H 0.080 0.920 34 H 0.136 0.864 35 H 0.067 0.933 36 H 0.089 0.911 37 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 0.374 13.460 2.373 13.673 hybrid contribution 1.972 -0.036 0.623 2.069 sum 2.346 13.424 2.997 13.953 Atomic orbital electron populations 1.20767 0.91211 1.03244 1.01353 1.19602 0.96119 0.91601 1.03349 1.20848 0.94138 0.96905 1.00516 1.20946 0.94231 0.97638 1.04254 1.20953 0.99373 0.92330 0.99694 1.21538 0.93968 0.98895 1.04438 1.19066 0.91192 0.90896 0.96788 1.59274 1.27986 1.00949 1.32088 1.23133 0.97706 1.01913 0.88057 1.22137 0.96779 0.87677 1.00787 1.61050 1.23762 1.37460 1.05252 1.19186 0.91632 0.87994 0.89227 0.93492 1.20835 0.92758 0.91349 1.53229 0.92842 1.24932 0.94709 0.98484 0.94075 1.70097 1.11076 1.20852 1.45869 0.86814 0.81065 0.82196 0.78677 1.20377 1.21314 1.20358 1.23290 0.94804 0.92183 0.99905 0.91968 0.92269 0.90142 0.86464 0.86729 0.86591 0.85463 0.90681 0.95220 0.91134 0.91958 0.86419 0.93297 0.91091 0.95086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.43 8.26 36.01 0.30 -1.13 16 2 C -0.10 -1.57 5.76 -104.42 -0.60 -2.17 16 3 C -0.11 -1.39 9.71 -39.61 -0.38 -1.78 16 4 C -0.15 -1.95 10.04 -39.54 -0.40 -2.34 16 5 C -0.10 -1.46 10.04 -39.61 -0.40 -1.86 16 6 C -0.17 -2.74 8.85 -39.38 -0.35 -3.09 16 7 C 0.12 2.04 5.39 -83.79 -0.45 1.58 16 8 N -0.49 -9.10 3.96 -170.95 -0.68 -9.78 16 9 C 0.02 0.33 5.06 -3.77 -0.02 0.31 16 10 C 0.06 1.09 6.72 -3.76 -0.03 1.07 16 11 N -0.65 -14.94 5.87 -107.81 -0.63 -15.57 16 12 C 0.23 5.59 2.45 -68.81 -0.17 5.42 16 13 H 0.05 1.31 8.14 -51.93 -0.42 0.89 16 14 C -0.54 -14.57 8.69 -34.44 -0.30 -14.87 16 15 H 0.05 1.41 7.74 -52.49 -0.41 1.01 16 16 C 0.09 2.34 5.39 -17.82 -0.10 2.24 16 17 N -0.84 -24.21 12.77 55.43 0.71 -23.50 16 18 Si 0.88 20.94 29.54 -169.99 -5.02 15.92 16 19 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 20 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 21 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 22 C 0.03 0.55 3.54 -3.77 -0.01 0.54 16 23 H 0.06 0.73 7.37 -51.93 -0.38 0.35 16 24 H 0.06 0.66 8.11 -51.93 -0.42 0.24 16 25 H 0.08 1.19 6.93 -51.93 -0.36 0.83 16 26 H 0.12 1.25 8.06 -52.49 -0.42 0.82 16 27 H 0.11 1.17 8.06 -52.49 -0.42 0.74 16 28 H 0.12 1.35 8.06 -52.49 -0.42 0.92 16 29 H 0.13 2.13 5.89 -52.49 -0.31 1.82 16 30 H 0.07 1.14 5.24 -51.93 -0.27 0.87 16 31 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.07 1.42 8.14 -51.93 -0.42 0.99 16 33 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 34 H 0.32 7.24 8.79 -39.29 -0.35 6.90 16 35 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 36 H 0.07 1.51 7.70 -51.93 -0.40 1.11 16 37 H 0.03 0.65 7.09 -51.93 -0.37 0.28 16 LS Contribution 293.27 15.07 4.42 4.42 Total: -1.00 -28.52 293.27 -9.47 -37.99 By element: Atomic # 1 Polarization: 11.96 SS G_CDS: -5.36 Total: 6.60 kcal Atomic # 6 Polarization: -13.17 SS G_CDS: -2.91 Total: -16.08 kcal Atomic # 7 Polarization: -48.25 SS G_CDS: -0.60 Total: -48.85 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -28.52 -9.47 -37.99 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000221057904.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.235 kcal (2) G-P(sol) polarization free energy of solvation -28.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.987 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds