Wall clock time and date at job start Mon Mar 30 2020 03:49:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38121 * 120.03727 * 2 1 4 4 C 1.38270 * 120.07422 * 180.27308 * 3 2 1 5 5 C 1.38305 * 120.14844 * 359.74019 * 4 3 2 6 6 C 1.38091 * 120.07605 * 359.97438 * 5 4 3 7 7 C 1.38892 * 120.03411 * 179.73743 * 2 1 3 8 8 N 1.39668 * 120.07790 * 0.02562 * 7 2 1 9 9 C 1.46951 * 111.00436 * 115.92241 * 8 7 2 10 10 C 1.53045 * 109.36887 * 183.18912 * 9 8 7 11 11 N 1.46958 * 109.36292 * 301.59556 * 10 9 8 12 12 C 1.46961 * 110.88056 * 59.32208 * 11 10 9 13 13 H 1.09003 * 109.50727 * 60.65586 * 12 11 10 14 14 C 1.50694 * 109.49177 * 180.71233 * 12 11 10 15 15 H 1.08000 * 120.00563 * 119.88983 * 14 12 11 16 16 C 1.37885 * 119.99902 * 299.88820 * 14 12 11 17 17 N 1.31516 * 119.99913 * 0.02562 * 16 14 12 18 18 Si 1.86805 * 119.99854 * 179.72538 * 16 14 12 19 19 H 1.48498 * 109.46909 * 90.00086 * 18 16 14 20 20 H 1.48497 * 109.46701 * 209.99996 * 18 16 14 21 21 H 1.48500 * 109.46867 * 330.00101 * 18 16 14 22 22 C 1.46958 * 110.99887 * 239.72338 * 8 7 2 23 23 H 1.08993 * 109.47260 * 270.25846 * 1 2 3 24 24 H 1.09003 * 109.46748 * 30.26578 * 1 2 3 25 25 H 1.09003 * 109.46993 * 150.26053 * 1 2 3 26 26 H 1.08000 * 119.96799 * 0.02562 * 3 2 1 27 27 H 1.07993 * 119.92920 * 179.76484 * 4 3 2 28 28 H 1.07998 * 119.96272 * 180.02562 * 5 4 3 29 29 H 1.07999 * 120.03947 * 180.02562 * 6 5 4 30 30 H 1.08998 * 109.48949 * 303.15831 * 9 8 7 31 31 H 1.09005 * 109.48718 * 63.19777 * 9 8 7 32 32 H 1.08996 * 109.49400 * 61.56156 * 10 9 8 33 33 H 1.08999 * 109.49178 * 181.61247 * 10 9 8 34 34 H 1.00898 * 111.00592 * 295.45186 * 11 10 9 35 35 H 0.97001 * 119.99646 * 180.02562 * 17 16 14 36 36 H 1.08997 * 109.49542 * 56.83962 * 22 8 7 37 37 H 1.08997 * 109.50793 * 296.78614 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1957 0.0000 4 6 3.5811 1.1966 -0.0057 5 6 4.2765 0.0011 -0.0060 6 6 3.5915 -1.1979 -0.0001 7 6 2.2022 -1.2024 0.0055 8 7 1.5062 -2.4133 0.0105 9 6 1.7642 -3.1742 -1.2199 10 6 0.9240 -4.4534 -1.2112 11 7 1.2609 -5.2495 -0.0228 12 6 1.0029 -4.4887 1.2078 13 1 -0.0544 -4.2290 1.2602 14 6 1.3748 -5.3262 2.4041 15 1 2.1344 -4.9812 3.0899 16 6 0.7453 -6.5333 2.6231 17 7 -0.1794 -6.9538 1.7878 18 14 1.2117 -7.5751 4.1019 19 1 0.3583 -7.2027 5.2587 20 1 1.0098 -9.0105 3.7795 21 1 2.6378 -7.3401 4.4428 22 6 1.8431 -3.2094 1.1990 23 1 -0.3633 0.0046 1.0276 24 1 -0.3633 0.8876 -0.5180 25 1 -0.3633 -0.8923 -0.5098 26 1 1.6585 2.1311 0.0004 27 1 4.1193 2.1329 -0.0095 28 1 5.3565 0.0053 -0.0100 29 1 4.1352 -2.1311 0.0001 30 1 1.4953 -2.5684 -2.0852 31 1 2.8216 -3.4336 -1.2721 32 1 -0.1342 -4.1934 -1.1866 33 1 1.1352 -5.0334 -2.1096 34 1 2.2185 -5.5653 -0.0586 35 1 -0.6225 -7.8028 1.9421 36 1 1.6317 -2.6294 2.0972 37 1 2.9013 -3.4696 1.1749 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000221057963.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:49:26 Heat of formation + Delta-G solvation = 37.156035 kcal Electronic energy + Delta-G solvation = -18039.805628 eV Core-core repulsion = 15395.736966 eV Total energy + Delta-G solvation = -2644.068662 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.92252 -37.56438 -33.93664 -32.51877 -32.18207 -29.97787 -29.16193 -26.56510 -25.32740 -24.13311 -22.11983 -21.56118 -20.62420 -19.29045 -17.11880 -16.12166 -15.40812 -15.20147 -14.63792 -14.20421 -13.95094 -13.64024 -13.55491 -13.31831 -13.01134 -12.86764 -12.27486 -11.99995 -11.92737 -11.68305 -11.17623 -10.95576 -10.93612 -10.87555 -10.71301 -10.49730 -10.12010 -9.74539 -9.00647 -8.62951 -8.40567 -8.28106 -7.97926 -6.82586 -5.87699 -4.02755 1.48902 1.53747 3.34064 3.41215 3.43424 3.88667 4.28359 4.51841 5.03161 5.06280 5.17526 5.27059 5.44017 5.55032 5.59303 5.72809 5.79994 5.90571 5.99155 5.99626 6.00792 6.07821 6.22814 6.34266 6.39168 6.47654 6.60020 6.62328 6.75233 6.81082 6.87752 7.08419 7.28207 7.68730 7.89251 7.91372 8.22576 8.59198 8.92605 9.12109 9.66143 11.16710 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.031757 B = 0.005986 C = 0.005708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 881.471454 B = 4676.581009 C = 4904.055781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.066 4.066 3 C -0.121 4.121 4 C -0.130 4.130 5 C -0.121 4.121 6 C -0.147 4.147 7 C 0.101 3.899 8 N -0.502 5.502 9 C 0.026 3.974 10 C 0.060 3.940 11 N -0.648 5.648 12 C 0.229 3.771 13 H 0.047 0.953 14 C -0.541 4.541 15 H 0.053 0.947 16 C 0.085 3.915 17 N -0.845 5.845 18 Si 0.884 3.116 19 H -0.281 1.281 20 H -0.287 1.287 21 H -0.276 1.276 22 C 0.036 3.964 23 H 0.067 0.933 24 H 0.054 0.946 25 H 0.080 0.920 26 H 0.120 0.880 27 H 0.117 0.883 28 H 0.116 0.884 29 H 0.116 0.884 30 H 0.062 0.938 31 H 0.026 0.974 32 H 0.070 0.930 33 H 0.060 0.940 34 H 0.318 0.682 35 H 0.256 0.744 36 H 0.065 0.935 37 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.742 12.718 -5.541 14.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.067 4.067 3 C -0.139 4.139 4 C -0.148 4.148 5 C -0.140 4.140 6 C -0.167 4.167 7 C 0.007 3.993 8 N -0.223 5.223 9 C -0.103 4.103 10 C -0.072 4.072 11 N -0.275 5.275 12 C 0.121 3.879 13 H 0.065 0.935 14 C -0.580 4.580 15 H 0.071 0.929 16 C -0.122 4.122 17 N -0.479 5.479 18 Si 0.711 3.289 19 H -0.207 1.207 20 H -0.213 1.213 21 H -0.201 1.201 22 C -0.091 4.091 23 H 0.086 0.914 24 H 0.073 0.927 25 H 0.099 0.901 26 H 0.138 0.862 27 H 0.135 0.865 28 H 0.134 0.866 29 H 0.134 0.866 30 H 0.081 0.919 31 H 0.044 0.956 32 H 0.088 0.912 33 H 0.078 0.922 34 H 0.134 0.866 35 H 0.066 0.934 36 H 0.084 0.916 37 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges 3.456 12.282 -5.563 13.919 hybrid contribution 2.069 -0.072 0.774 2.210 sum 5.525 12.210 -4.789 14.232 Atomic orbital electron populations 1.20633 0.90662 1.02436 1.02351 1.19886 0.96607 0.91450 0.98754 1.20956 0.94134 0.97222 1.01637 1.21038 0.94311 0.97673 1.01787 1.20949 0.99411 0.92411 1.01191 1.21724 0.95144 0.98295 1.01541 1.18940 0.90068 0.91831 0.98448 1.59880 1.55922 1.02717 1.03806 1.22981 0.98472 0.97495 0.91375 1.22093 0.99472 0.90175 0.95430 1.61054 1.27031 1.38849 1.00610 1.19165 0.95283 0.85476 0.88005 0.93473 1.20892 1.23374 1.05241 1.08529 0.92878 1.24934 0.94506 0.97348 0.95421 1.70113 1.23408 1.19932 1.34479 0.86768 0.78838 0.79828 0.83436 1.20746 1.21263 1.20094 1.23169 0.98521 0.97426 0.89992 0.91405 0.92749 0.90128 0.86216 0.86524 0.86644 0.86588 0.91907 0.95625 0.91174 0.92201 0.86553 0.93398 0.91610 0.95889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.45 9.77 36.01 0.35 -1.09 16 2 C -0.07 -1.00 5.90 -104.42 -0.62 -1.62 16 3 C -0.12 -1.57 9.70 -39.61 -0.38 -1.96 16 4 C -0.13 -1.61 10.04 -39.54 -0.40 -2.01 16 5 C -0.12 -1.62 10.04 -39.61 -0.40 -2.02 16 6 C -0.15 -2.32 8.64 -39.38 -0.34 -2.66 16 7 C 0.10 1.72 4.70 -83.79 -0.39 1.32 16 8 N -0.50 -9.34 3.63 -170.96 -0.62 -9.96 16 9 C 0.03 0.45 5.35 -3.77 -0.02 0.43 16 10 C 0.06 1.15 6.72 -3.77 -0.03 1.12 16 11 N -0.65 -15.09 5.88 -107.81 -0.63 -15.72 16 12 C 0.23 5.66 2.45 -68.81 -0.17 5.49 16 13 H 0.05 1.32 8.14 -51.93 -0.42 0.90 16 14 C -0.54 -14.69 8.69 -34.44 -0.30 -14.99 16 15 H 0.05 1.43 7.74 -52.49 -0.41 1.03 16 16 C 0.09 2.35 5.39 -17.82 -0.10 2.25 16 17 N -0.85 -24.35 12.78 55.43 0.71 -23.64 16 18 Si 0.88 21.09 29.54 -169.99 -5.02 16.06 16 19 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 20 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 21 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 22 C 0.04 0.78 4.53 -3.76 -0.02 0.76 16 23 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 24 H 0.05 0.62 8.09 -51.93 -0.42 0.20 16 25 H 0.08 1.24 7.46 -51.93 -0.39 0.85 16 26 H 0.12 1.26 8.06 -52.49 -0.42 0.83 16 27 H 0.12 1.13 8.06 -52.49 -0.42 0.70 16 28 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 29 H 0.12 1.85 7.06 -52.49 -0.37 1.48 16 30 H 0.06 1.01 8.13 -51.93 -0.42 0.59 16 31 H 0.03 0.45 7.44 -51.93 -0.39 0.06 16 32 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 33 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.32 7.29 8.79 -39.29 -0.35 6.94 16 35 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 36 H 0.07 1.44 8.13 -51.93 -0.42 1.02 16 37 H 0.02 0.49 7.24 -51.93 -0.38 0.12 16 LS Contribution 300.18 15.07 4.52 4.52 Total: -1.00 -28.61 300.18 -9.48 -38.08 By element: Atomic # 1 Polarization: 11.26 SS G_CDS: -5.63 Total: 5.63 kcal Atomic # 6 Polarization: -12.17 SS G_CDS: -2.80 Total: -14.98 kcal Atomic # 7 Polarization: -48.78 SS G_CDS: -0.55 Total: -49.33 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -28.61 -9.48 -38.08 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000221057963.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.240 kcal (2) G-P(sol) polarization free energy of solvation -28.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.084 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds