Wall clock time and date at job start Mon Mar 30 2020 03:49:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38121 * 120.03727 * 2 1 4 4 C 1.38270 * 120.07422 * 180.27308 * 3 2 1 5 5 C 1.38305 * 120.14844 * 359.74019 * 4 3 2 6 6 C 1.38091 * 120.07605 * 359.97438 * 5 4 3 7 7 C 1.38892 * 120.03411 * 179.73743 * 2 1 3 8 8 N 1.39668 * 120.07790 * 0.02562 * 7 2 1 9 9 C 1.46951 * 111.00436 * 115.92241 * 8 7 2 10 10 C 1.53045 * 109.36887 * 183.18912 * 9 8 7 11 11 N 1.46958 * 109.36292 * 301.59556 * 10 9 8 12 12 C 1.46961 * 110.88056 * 59.32208 * 11 10 9 13 13 H 1.09003 * 109.50727 * 60.65586 * 12 11 10 14 14 C 1.50694 * 109.49177 * 180.71233 * 12 11 10 15 15 H 1.08000 * 120.00563 * 119.88983 * 14 12 11 16 16 C 1.37885 * 119.99902 * 299.88820 * 14 12 11 17 17 N 1.31516 * 119.99913 * 0.02562 * 16 14 12 18 18 Si 1.86805 * 119.99854 * 179.72538 * 16 14 12 19 19 H 1.48498 * 109.46909 * 90.00086 * 18 16 14 20 20 H 1.48497 * 109.46701 * 209.99996 * 18 16 14 21 21 H 1.48500 * 109.46867 * 330.00101 * 18 16 14 22 22 C 1.46958 * 110.99887 * 239.72338 * 8 7 2 23 23 H 1.08993 * 109.47260 * 270.25846 * 1 2 3 24 24 H 1.09003 * 109.46748 * 30.26578 * 1 2 3 25 25 H 1.09003 * 109.46993 * 150.26053 * 1 2 3 26 26 H 1.08000 * 119.96799 * 0.02562 * 3 2 1 27 27 H 1.07993 * 119.92920 * 179.76484 * 4 3 2 28 28 H 1.07998 * 119.96272 * 180.02562 * 5 4 3 29 29 H 1.07999 * 120.03947 * 180.02562 * 6 5 4 30 30 H 1.08998 * 109.48949 * 303.15831 * 9 8 7 31 31 H 1.09005 * 109.48718 * 63.19777 * 9 8 7 32 32 H 1.08996 * 109.49400 * 61.56156 * 10 9 8 33 33 H 1.08999 * 109.49178 * 181.61247 * 10 9 8 34 34 H 1.00898 * 111.00592 * 295.45186 * 11 10 9 35 35 H 0.97001 * 119.99646 * 180.02562 * 17 16 14 36 36 H 1.08997 * 109.49542 * 56.83962 * 22 8 7 37 37 H 1.08997 * 109.50793 * 296.78614 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1957 0.0000 4 6 3.5811 1.1966 -0.0057 5 6 4.2765 0.0011 -0.0060 6 6 3.5915 -1.1979 -0.0001 7 6 2.2022 -1.2024 0.0055 8 7 1.5062 -2.4133 0.0105 9 6 1.7642 -3.1742 -1.2199 10 6 0.9240 -4.4534 -1.2112 11 7 1.2609 -5.2495 -0.0228 12 6 1.0029 -4.4887 1.2078 13 1 -0.0544 -4.2290 1.2602 14 6 1.3748 -5.3262 2.4041 15 1 2.1344 -4.9812 3.0899 16 6 0.7453 -6.5333 2.6231 17 7 -0.1794 -6.9538 1.7878 18 14 1.2117 -7.5751 4.1019 19 1 0.3583 -7.2027 5.2587 20 1 1.0098 -9.0105 3.7795 21 1 2.6378 -7.3401 4.4428 22 6 1.8431 -3.2094 1.1990 23 1 -0.3633 0.0046 1.0276 24 1 -0.3633 0.8876 -0.5180 25 1 -0.3633 -0.8923 -0.5098 26 1 1.6585 2.1311 0.0004 27 1 4.1193 2.1329 -0.0095 28 1 5.3565 0.0053 -0.0100 29 1 4.1352 -2.1311 0.0001 30 1 1.4953 -2.5684 -2.0852 31 1 2.8216 -3.4336 -1.2721 32 1 -0.1342 -4.1934 -1.1866 33 1 1.1352 -5.0334 -2.1096 34 1 2.2185 -5.5653 -0.0586 35 1 -0.6225 -7.8028 1.9421 36 1 1.6317 -2.6294 2.0972 37 1 2.9013 -3.4696 1.1749 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000221057963.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:49:26 Heat of formation + Delta-G solvation = 19.624769 kcal Electronic energy + Delta-G solvation = -18040.565841 eV Core-core repulsion = 15395.736966 eV Total energy + Delta-G solvation = -2644.828875 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.22504 -39.00147 -35.59480 -34.15615 -33.52413 -31.79954 -30.39648 -27.74830 -27.22154 -25.68352 -23.60189 -23.06858 -21.81439 -20.96485 -18.82084 -17.66827 -16.67557 -16.62734 -16.25556 -15.82775 -15.37125 -15.24441 -15.12802 -14.82903 -14.30996 -14.06807 -13.96045 -13.51449 -13.07723 -12.88390 -12.85488 -12.71540 -12.57985 -12.30690 -12.18233 -12.04303 -11.82809 -11.65056 -11.01514 -10.53188 -9.72626 -9.49963 -9.38892 -8.62381 -7.98434 -6.20947 0.37383 0.45676 1.44386 1.45245 1.54723 2.45662 2.79983 2.91290 3.22734 3.87886 3.97809 4.01955 4.18361 4.19692 4.29840 4.36397 4.44522 4.47532 4.56391 4.66796 4.76037 4.82815 4.87864 4.91280 4.97596 5.03638 5.17369 5.40013 5.43151 5.52272 5.57653 5.71263 5.72145 5.98070 6.00487 6.20942 6.54466 6.61590 7.07167 7.09469 7.51972 9.05266 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.031757 B = 0.005986 C = 0.005708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 881.471454 B = 4676.581009 C = 4904.055781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.080 4.080 3 C -0.118 4.118 4 C -0.121 4.121 5 C -0.122 4.122 6 C -0.162 4.162 7 C 0.068 3.932 8 N -0.504 5.504 9 C 0.036 3.964 10 C 0.063 3.937 11 N -0.666 5.666 12 C 0.235 3.765 13 H 0.005 0.995 14 C -0.558 4.558 15 H 0.049 0.951 16 C 0.038 3.962 17 N -0.878 5.878 18 Si 0.950 3.050 19 H -0.277 1.277 20 H -0.284 1.284 21 H -0.271 1.271 22 C 0.057 3.943 23 H 0.061 0.939 24 H 0.082 0.918 25 H 0.058 0.942 26 H 0.150 0.850 27 H 0.153 0.847 28 H 0.140 0.860 29 H 0.105 0.895 30 H 0.082 0.918 31 H 0.029 0.971 32 H 0.054 0.946 33 H 0.083 0.917 34 H 0.319 0.681 35 H 0.256 0.744 36 H 0.051 0.949 37 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.083 14.652 -5.834 16.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.081 4.081 3 C -0.136 4.136 4 C -0.139 4.139 5 C -0.141 4.141 6 C -0.182 4.182 7 C -0.026 4.026 8 N -0.226 5.226 9 C -0.093 4.093 10 C -0.067 4.067 11 N -0.294 5.294 12 C 0.126 3.874 13 H 0.023 0.977 14 C -0.597 4.597 15 H 0.067 0.933 16 C -0.166 4.166 17 N -0.513 5.513 18 Si 0.776 3.224 19 H -0.203 1.203 20 H -0.209 1.209 21 H -0.195 1.195 22 C -0.071 4.071 23 H 0.080 0.920 24 H 0.101 0.899 25 H 0.077 0.923 26 H 0.168 0.832 27 H 0.171 0.829 28 H 0.158 0.842 29 H 0.123 0.877 30 H 0.100 0.900 31 H 0.047 0.953 32 H 0.072 0.928 33 H 0.101 0.899 34 H 0.135 0.865 35 H 0.065 0.935 36 H 0.070 0.930 37 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges 4.804 14.235 -5.864 16.128 hybrid contribution 1.665 -0.557 0.819 1.937 sum 6.469 13.678 -5.045 15.950 Atomic orbital electron populations 1.20597 0.90305 1.02748 1.02043 1.20117 0.97155 0.91733 0.99133 1.21325 0.94732 0.97425 1.00130 1.21487 0.94256 0.98684 0.99431 1.21267 1.00763 0.91878 1.00148 1.21731 0.94724 0.99062 1.02713 1.19064 0.90790 0.91332 1.01375 1.59754 1.56678 1.03208 1.02931 1.22853 0.98069 0.96662 0.91710 1.22079 0.98837 0.91171 0.94651 1.60827 1.27089 1.40117 1.01344 1.18843 0.93264 0.86918 0.88331 0.97725 1.21228 1.23219 1.05822 1.09472 0.93274 1.25660 0.94376 0.98481 0.98063 1.70244 1.24469 1.20313 1.36298 0.85716 0.78643 0.78028 0.80020 1.20290 1.20923 1.19532 1.22716 0.97261 0.96082 0.91056 0.92042 0.89894 0.92308 0.83195 0.82922 0.84242 0.87712 0.89984 0.95324 0.92783 0.89898 0.86470 0.93464 0.93026 0.96343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.69 9.77 71.24 0.70 -2.00 16 2 C -0.08 -2.32 5.90 -19.73 -0.12 -2.44 16 3 C -0.12 -2.66 9.70 22.25 0.22 -2.44 16 4 C -0.12 -2.50 10.04 22.29 0.22 -2.28 16 5 C -0.12 -2.93 10.04 22.25 0.22 -2.71 16 6 C -0.16 -4.96 8.64 22.40 0.19 -4.77 16 7 C 0.07 2.28 4.70 38.22 0.18 2.46 16 8 N -0.50 -19.13 3.63 -694.81 -2.52 -21.65 16 9 C 0.04 1.24 5.35 86.31 0.46 1.70 16 10 C 0.06 2.48 6.72 86.31 0.58 3.06 16 11 N -0.67 -31.96 5.88 -495.01 -2.91 -34.87 16 12 C 0.23 12.13 2.45 44.17 0.11 12.24 16 13 H 0.00 0.28 8.14 -2.39 -0.02 0.26 16 14 C -0.56 -31.22 8.69 25.60 0.22 -31.00 16 15 H 0.05 2.71 7.74 -2.91 -0.02 2.69 16 16 C 0.04 2.15 5.39 84.66 0.46 2.61 16 17 N -0.88 -51.82 12.78 21.45 0.27 -51.55 16 18 Si 0.95 43.90 29.54 68.60 2.03 45.93 16 19 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 20 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 21 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 22 C 0.06 2.53 4.53 86.31 0.39 2.92 16 23 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 24 H 0.08 1.70 8.09 -2.39 -0.02 1.68 16 25 H 0.06 1.82 7.46 -2.39 -0.02 1.80 16 26 H 0.15 2.45 8.06 -2.91 -0.02 2.42 16 27 H 0.15 2.09 8.06 -2.91 -0.02 2.07 16 28 H 0.14 2.62 8.06 -2.91 -0.02 2.60 16 29 H 0.10 3.35 7.06 -2.91 -0.02 3.33 16 30 H 0.08 2.57 8.13 -2.39 -0.02 2.55 16 31 H 0.03 0.99 7.44 -2.38 -0.02 0.97 16 32 H 0.05 2.28 8.14 -2.39 -0.02 2.26 16 33 H 0.08 2.84 8.14 -2.39 -0.02 2.82 16 34 H 0.32 14.97 8.79 -89.70 -0.79 14.18 16 35 H 0.26 14.42 8.31 -92.71 -0.77 13.65 16 36 H 0.05 2.37 8.13 -2.39 -0.02 2.35 16 37 H 0.02 0.82 7.24 -2.39 -0.02 0.80 16 Total: -1.00 -63.10 300.18 0.97 -62.13 By element: Atomic # 1 Polarization: 22.38 SS G_CDS: 0.26 Total: 22.64 kcal Atomic # 6 Polarization: -26.47 SS G_CDS: 3.84 Total: -22.64 kcal Atomic # 7 Polarization: -102.90 SS G_CDS: -5.16 Total: -108.06 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.93 kcal Total: -63.10 0.97 -62.13 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000221057963.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.759 kcal (2) G-P(sol) polarization free energy of solvation -63.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.134 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds