Wall clock time and date at job start Mon Mar 30 2020 03:49:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38305 * 119.96609 * 2 1 4 4 C 1.38269 * 120.15021 * 179.97438 * 3 2 1 5 5 C 1.38128 * 120.07371 * 359.74982 * 4 3 2 6 6 C 1.38895 * 119.92624 * 0.52899 * 5 4 3 7 7 N 1.39671 * 120.07511 * 179.74689 * 6 5 4 8 8 C 1.46954 * 110.99833 * 123.67686 * 7 6 5 9 9 C 1.53049 * 109.36229 * 183.18528 * 8 7 6 10 10 N 1.46949 * 109.36740 * 301.59748 * 9 8 7 11 11 C 1.46964 * 110.87762 * 59.32235 * 10 9 8 12 12 H 1.09003 * 109.48924 * 60.66840 * 11 10 9 13 13 C 1.50706 * 109.48597 * 180.71146 * 11 10 9 14 14 H 1.07999 * 119.99515 * 120.00394 * 13 11 10 15 15 C 1.37870 * 120.00176 * 299.99860 * 13 11 10 16 16 N 1.31520 * 119.99883 * 0.02562 * 15 13 11 17 17 Si 1.86800 * 120.00043 * 180.02562 * 15 13 11 18 18 H 1.48494 * 109.47288 * 59.99994 * 17 15 13 19 19 H 1.48503 * 109.47086 * 179.97438 * 17 15 13 20 20 H 1.48505 * 109.46819 * 299.99648 * 17 15 13 21 21 C 1.46960 * 110.99817 * 247.47702 * 7 6 5 22 22 C 1.38091 * 119.96042 * 180.02562 * 2 1 3 23 23 H 1.09004 * 109.46935 * 269.97651 * 1 2 3 24 24 H 1.09000 * 109.47016 * 29.97347 * 1 2 3 25 25 H 1.08996 * 109.47256 * 149.97748 * 1 2 3 26 26 H 1.08001 * 119.92383 * 0.02773 * 3 2 1 27 27 H 1.07999 * 119.96346 * 180.02562 * 4 3 2 28 28 H 1.07996 * 120.03880 * 180.26991 * 5 4 3 29 29 H 1.09002 * 109.48831 * 63.21885 * 8 7 6 30 30 H 1.09001 * 109.50967 * 303.16575 * 8 7 6 31 31 H 1.09008 * 109.48684 * 181.63051 * 9 8 7 32 32 H 1.08999 * 109.50652 * 61.58041 * 9 8 7 33 33 H 1.00906 * 111.00128 * 183.18572 * 10 9 8 34 34 H 0.97004 * 119.99507 * 180.02562 * 16 15 13 35 35 H 1.08995 * 109.48891 * 56.84566 * 21 7 6 36 36 H 1.09001 * 109.48913 * 296.77764 * 21 7 6 37 37 H 1.07997 * 120.03734 * 0.02739 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1982 0.0000 4 6 3.5805 1.2026 0.0005 5 6 4.2765 0.0095 0.0063 6 6 3.5859 -1.1956 0.0004 7 7 4.2866 -2.4038 0.0009 8 6 3.8875 -3.2436 1.1389 9 6 4.7323 -4.5198 1.1486 10 7 4.5475 -5.2362 -0.1210 11 6 4.9467 -4.3963 -1.2591 12 1 6.0007 -4.1345 -1.1658 13 6 4.7285 -5.1536 -2.5437 14 1 4.0562 -4.7630 -3.2932 15 6 5.3872 -6.3449 -2.7620 16 7 6.2056 -6.8208 -1.8490 17 14 5.1173 -7.2832 -4.3546 18 1 5.5211 -6.4342 -5.5039 19 1 5.9355 -8.5225 -4.3437 20 1 3.6811 -7.6388 -4.4822 21 6 4.1019 -3.1202 -1.2689 22 6 2.1966 -1.1964 -0.0005 23 1 -0.3633 -0.0004 1.0277 24 1 -0.3633 0.8902 -0.5134 25 1 -0.3633 -0.8897 -0.5142 26 1 1.6560 2.1324 0.0005 27 1 4.1169 2.1400 0.0010 28 1 5.3564 0.0137 0.0111 29 1 2.8336 -3.5057 1.0454 30 1 4.0450 -2.6961 2.0682 31 1 4.4181 -5.1575 1.9750 32 1 5.7837 -4.2594 1.2697 33 1 5.0538 -6.1091 -0.1207 34 1 6.6694 -7.6588 -2.0029 35 1 4.4160 -2.4825 -2.0952 36 1 3.0505 -3.3810 -1.3898 37 1 1.6566 -2.1316 -0.0014 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000221058118.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:49:30 Heat of formation + Delta-G solvation = 30.853570 kcal Electronic energy + Delta-G solvation = -17803.175176 eV Core-core repulsion = 15158.833219 eV Total energy + Delta-G solvation = -2644.341957 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.77063 -37.52610 -34.22409 -32.54618 -32.01745 -29.96805 -29.08032 -26.83575 -25.54101 -24.27681 -22.18071 -21.55819 -20.43136 -18.66625 -16.98361 -16.21806 -15.55675 -15.16193 -14.77487 -14.36502 -14.05853 -13.74959 -13.59118 -13.31611 -12.94749 -12.88905 -12.39816 -12.10950 -11.98878 -11.65893 -11.29228 -10.99042 -10.93347 -10.91103 -10.80755 -10.43201 -10.11552 -9.48278 -9.19631 -8.61454 -8.56516 -8.31414 -7.89416 -6.89064 -6.11005 -4.14107 1.53174 1.56968 3.31225 3.35385 3.38453 3.91886 4.31832 4.47184 4.94669 5.01569 5.14662 5.27780 5.38519 5.57016 5.59521 5.65217 5.72430 5.80554 5.84679 6.00528 6.04822 6.08722 6.27345 6.34030 6.44211 6.56680 6.61110 6.65249 6.72360 6.80280 6.89906 7.11330 7.38188 7.61314 7.86150 7.97594 8.17040 8.63296 8.96336 9.09165 9.53738 10.99708 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.030778 B = 0.005642 C = 0.005336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.526988 B = 4961.200083 C = 5245.680753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.082 4.082 3 C -0.136 4.136 4 C -0.114 4.114 5 C -0.107 4.107 6 C 0.110 3.890 7 N -0.512 5.512 8 C 0.069 3.931 9 C 0.055 3.945 10 N -0.686 5.686 11 C 0.220 3.780 12 H 0.006 0.994 13 C -0.507 4.507 14 H 0.059 0.941 15 C 0.068 3.932 16 N -0.900 5.900 17 Si 0.900 3.100 18 H -0.277 1.277 19 H -0.287 1.287 20 H -0.276 1.276 21 C 0.077 3.923 22 C -0.150 4.150 23 H 0.067 0.933 24 H 0.063 0.937 25 H 0.065 0.935 26 H 0.116 0.884 27 H 0.120 0.880 28 H 0.126 0.874 29 H 0.037 0.963 30 H 0.062 0.938 31 H 0.059 0.941 32 H 0.022 0.978 33 H 0.364 0.636 34 H 0.265 0.735 35 H 0.063 0.937 36 H 0.033 0.967 37 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.869 11.991 5.350 14.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.083 4.083 3 C -0.154 4.154 4 C -0.132 4.132 5 C -0.126 4.126 6 C 0.016 3.984 7 N -0.234 5.234 8 C -0.058 4.058 9 C -0.075 4.075 10 N -0.324 5.324 11 C 0.112 3.888 12 H 0.023 0.977 13 C -0.546 4.546 14 H 0.077 0.923 15 C -0.133 4.133 16 N -0.540 5.540 17 Si 0.728 3.272 18 H -0.203 1.203 19 H -0.213 1.213 20 H -0.202 1.202 21 C -0.049 4.049 22 C -0.170 4.170 23 H 0.085 0.915 24 H 0.082 0.918 25 H 0.084 0.916 26 H 0.134 0.866 27 H 0.138 0.862 28 H 0.144 0.856 29 H 0.055 0.945 30 H 0.081 0.919 31 H 0.077 0.923 32 H 0.040 0.960 33 H 0.188 0.812 34 H 0.075 0.925 35 H 0.082 0.918 36 H 0.052 0.948 37 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -6.889 12.052 5.375 14.886 hybrid contribution 0.063 -0.770 -0.775 1.094 sum -6.826 11.282 4.600 13.966 Atomic orbital electron populations 1.20776 0.91583 1.02563 1.02017 1.19770 0.95751 0.93003 0.99742 1.20933 0.94291 0.97082 1.03087 1.21021 0.94114 0.97665 1.00427 1.21073 1.00263 0.90903 1.00408 1.19075 0.90182 0.92027 0.97140 1.59972 1.55286 1.02976 1.05134 1.22145 0.97943 0.93589 0.92150 1.21862 0.96827 0.93754 0.95098 1.61009 1.62740 1.08708 0.99930 1.19038 0.92392 0.87701 0.89672 0.97674 1.21053 1.26227 1.06347 1.00979 0.92267 1.24965 0.94259 0.97206 0.96901 1.69669 1.28817 1.21072 1.34463 0.86527 0.78249 0.79038 0.83373 1.20276 1.21276 1.20159 1.22400 0.99373 0.95533 0.87562 1.21659 0.94996 0.97867 1.02465 0.91452 0.91776 0.91642 0.86589 0.86187 0.85626 0.94462 0.91937 0.92293 0.95955 0.81160 0.92530 0.91805 0.94835 0.86280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.19 10.01 36.00 0.36 -0.83 16 2 C -0.08 -1.11 5.88 -104.65 -0.62 -1.73 16 3 C -0.14 -1.70 9.70 -39.55 -0.38 -2.08 16 4 C -0.11 -1.47 10.04 -39.61 -0.40 -1.87 16 5 C -0.11 -1.66 9.97 -39.38 -0.39 -2.05 16 6 C 0.11 1.91 4.72 -83.79 -0.40 1.52 16 7 N -0.51 -10.12 4.68 -170.96 -0.80 -10.92 16 8 C 0.07 1.29 5.26 -3.77 -0.02 1.27 16 9 C 0.06 1.14 6.72 -3.77 -0.03 1.11 16 10 N -0.69 -16.79 6.53 -107.81 -0.70 -17.50 16 11 C 0.22 5.67 2.55 -68.80 -0.18 5.49 16 12 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16 13 C -0.51 -13.98 8.76 -34.44 -0.30 -14.28 16 14 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 15 C 0.07 1.87 5.35 -17.82 -0.10 1.78 16 16 N -0.90 -25.24 11.49 55.43 0.64 -24.60 16 17 Si 0.90 21.19 29.54 -169.99 -5.02 16.17 16 18 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 19 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 20 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 21 C 0.08 1.72 4.62 -3.77 -0.02 1.71 16 22 C -0.15 -2.39 8.33 -39.38 -0.33 -2.72 16 23 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 24 H 0.06 0.58 8.08 -51.93 -0.42 0.16 16 25 H 0.06 0.69 8.08 -51.93 -0.42 0.27 16 26 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 27 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 28 H 0.13 1.87 8.06 -52.49 -0.42 1.45 16 29 H 0.04 0.70 7.05 -51.93 -0.37 0.34 16 30 H 0.06 1.05 8.13 -51.93 -0.42 0.63 16 31 H 0.06 1.08 8.14 -51.92 -0.42 0.66 16 32 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.36 9.60 6.71 -39.29 -0.26 9.33 16 34 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 35 H 0.06 1.43 8.13 -51.93 -0.42 1.00 16 36 H 0.03 0.77 7.68 -51.93 -0.40 0.37 16 37 H 0.12 1.95 7.06 -52.49 -0.37 1.58 16 LS Contribution 299.18 15.07 4.51 4.51 Total: -1.00 -28.41 299.18 -9.75 -38.16 By element: Atomic # 1 Polarization: 12.45 SS G_CDS: -5.58 Total: 6.87 kcal Atomic # 6 Polarization: -9.90 SS G_CDS: -2.79 Total: -12.69 kcal Atomic # 7 Polarization: -52.15 SS G_CDS: -0.87 Total: -53.01 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -28.41 -9.75 -38.16 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000221058118.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.011 kcal (2) G-P(sol) polarization free energy of solvation -28.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.158 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds