Wall clock time and date at job start Mon Mar 30 2020 03:49:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38305 * 119.96609 * 2 1 4 4 C 1.38269 * 120.15021 * 179.97438 * 3 2 1 5 5 C 1.38128 * 120.07371 * 359.74982 * 4 3 2 6 6 C 1.38895 * 119.92624 * 0.52899 * 5 4 3 7 7 N 1.39671 * 120.07511 * 179.74689 * 6 5 4 8 8 C 1.46954 * 110.99833 * 123.67686 * 7 6 5 9 9 C 1.53049 * 109.36229 * 183.18528 * 8 7 6 10 10 N 1.46949 * 109.36740 * 301.59748 * 9 8 7 11 11 C 1.46964 * 110.87762 * 59.32235 * 10 9 8 12 12 H 1.09003 * 109.48924 * 60.66840 * 11 10 9 13 13 C 1.50706 * 109.48597 * 180.71146 * 11 10 9 14 14 H 1.07999 * 119.99515 * 120.00394 * 13 11 10 15 15 C 1.37870 * 120.00176 * 299.99860 * 13 11 10 16 16 N 1.31520 * 119.99883 * 0.02562 * 15 13 11 17 17 Si 1.86800 * 120.00043 * 180.02562 * 15 13 11 18 18 H 1.48494 * 109.47288 * 59.99994 * 17 15 13 19 19 H 1.48503 * 109.47086 * 179.97438 * 17 15 13 20 20 H 1.48505 * 109.46819 * 299.99648 * 17 15 13 21 21 C 1.46960 * 110.99817 * 247.47702 * 7 6 5 22 22 C 1.38091 * 119.96042 * 180.02562 * 2 1 3 23 23 H 1.09004 * 109.46935 * 269.97651 * 1 2 3 24 24 H 1.09000 * 109.47016 * 29.97347 * 1 2 3 25 25 H 1.08996 * 109.47256 * 149.97748 * 1 2 3 26 26 H 1.08001 * 119.92383 * 0.02773 * 3 2 1 27 27 H 1.07999 * 119.96346 * 180.02562 * 4 3 2 28 28 H 1.07996 * 120.03880 * 180.26991 * 5 4 3 29 29 H 1.09002 * 109.48831 * 63.21885 * 8 7 6 30 30 H 1.09001 * 109.50967 * 303.16575 * 8 7 6 31 31 H 1.09008 * 109.48684 * 181.63051 * 9 8 7 32 32 H 1.08999 * 109.50652 * 61.58041 * 9 8 7 33 33 H 1.00906 * 111.00128 * 183.18572 * 10 9 8 34 34 H 0.97004 * 119.99507 * 180.02562 * 16 15 13 35 35 H 1.08995 * 109.48891 * 56.84566 * 21 7 6 36 36 H 1.09001 * 109.48913 * 296.77764 * 21 7 6 37 37 H 1.07997 * 120.03734 * 0.02739 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1982 0.0000 4 6 3.5805 1.2026 0.0005 5 6 4.2765 0.0095 0.0063 6 6 3.5859 -1.1956 0.0004 7 7 4.2866 -2.4038 0.0009 8 6 3.8875 -3.2436 1.1389 9 6 4.7323 -4.5198 1.1486 10 7 4.5475 -5.2362 -0.1210 11 6 4.9467 -4.3963 -1.2591 12 1 6.0007 -4.1345 -1.1658 13 6 4.7285 -5.1536 -2.5437 14 1 4.0562 -4.7630 -3.2932 15 6 5.3872 -6.3449 -2.7620 16 7 6.2056 -6.8208 -1.8490 17 14 5.1173 -7.2832 -4.3546 18 1 5.5211 -6.4342 -5.5039 19 1 5.9355 -8.5225 -4.3437 20 1 3.6811 -7.6388 -4.4822 21 6 4.1019 -3.1202 -1.2689 22 6 2.1966 -1.1964 -0.0005 23 1 -0.3633 -0.0004 1.0277 24 1 -0.3633 0.8902 -0.5134 25 1 -0.3633 -0.8897 -0.5142 26 1 1.6560 2.1324 0.0005 27 1 4.1169 2.1400 0.0010 28 1 5.3564 0.0137 0.0111 29 1 2.8336 -3.5057 1.0454 30 1 4.0450 -2.6961 2.0682 31 1 4.4181 -5.1575 1.9750 32 1 5.7837 -4.2594 1.2697 33 1 5.0538 -6.1091 -0.1207 34 1 6.6694 -7.6588 -2.0029 35 1 4.4160 -2.4825 -2.0952 36 1 3.0505 -3.3810 -1.3898 37 1 1.6566 -2.1316 -0.0014 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000221058118.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:49:29 Heat of formation + Delta-G solvation = 12.835089 kcal Electronic energy + Delta-G solvation = -17803.956516 eV Core-core repulsion = 15158.833219 eV Total energy + Delta-G solvation = -2645.123297 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.09564 -39.00516 -35.93159 -34.20956 -33.30248 -31.84226 -30.40320 -27.84443 -27.42649 -25.95454 -23.71918 -23.00873 -21.67325 -20.40611 -18.76944 -17.68630 -17.12272 -16.61864 -16.23866 -15.96651 -15.76534 -15.29448 -14.99669 -14.56809 -14.47695 -14.11322 -13.86125 -13.81405 -13.07776 -12.90843 -12.82369 -12.70227 -12.58645 -12.43103 -12.19293 -12.05044 -11.93990 -11.33386 -11.16807 -10.68452 -9.71241 -9.53918 -9.36948 -8.87341 -8.20296 -6.32274 0.38798 0.47234 1.42758 1.44703 1.52546 2.40587 2.80634 2.93154 3.06216 3.90147 3.93685 4.03457 4.11361 4.24261 4.31931 4.44238 4.45969 4.52959 4.57013 4.59768 4.76866 4.81058 4.82700 4.91883 4.96701 4.98673 5.08141 5.30453 5.36742 5.52673 5.61347 5.68495 5.72297 5.86715 6.01331 6.15968 6.54382 6.58471 6.90176 7.04696 7.39634 8.89321 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.030778 B = 0.005642 C = 0.005336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.526988 B = 4961.200083 C = 5245.680753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.084 4.084 3 C -0.128 4.128 4 C -0.106 4.106 5 C -0.121 4.121 6 C 0.078 3.922 7 N -0.518 5.518 8 C 0.075 3.925 9 C 0.054 3.946 10 N -0.692 5.692 11 C 0.223 3.777 12 H -0.037 1.037 13 C -0.534 4.534 14 H 0.056 0.944 15 C 0.023 3.977 16 N -0.923 5.923 17 Si 0.967 3.033 18 H -0.272 1.272 19 H -0.281 1.281 20 H -0.272 1.272 21 C 0.095 3.905 22 C -0.164 4.164 23 H 0.081 0.919 24 H 0.085 0.915 25 H 0.059 0.941 26 H 0.152 0.848 27 H 0.153 0.847 28 H 0.122 0.878 29 H 0.036 0.964 30 H 0.087 0.913 31 H 0.084 0.916 32 H 0.010 0.990 33 H 0.351 0.649 34 H 0.267 0.733 35 H 0.056 0.944 36 H 0.023 0.977 37 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.334 13.814 5.470 17.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.085 4.085 3 C -0.146 4.146 4 C -0.124 4.124 5 C -0.140 4.140 6 C -0.016 4.016 7 N -0.239 5.239 8 C -0.052 4.052 9 C -0.076 4.076 10 N -0.328 5.328 11 C 0.114 3.886 12 H -0.019 1.019 13 C -0.573 4.573 14 H 0.074 0.926 15 C -0.176 4.176 16 N -0.563 5.563 17 Si 0.792 3.208 18 H -0.197 1.197 19 H -0.206 1.206 20 H -0.197 1.197 21 C -0.032 4.032 22 C -0.184 4.184 23 H 0.099 0.901 24 H 0.104 0.896 25 H 0.078 0.922 26 H 0.170 0.830 27 H 0.170 0.830 28 H 0.140 0.860 29 H 0.054 0.946 30 H 0.105 0.895 31 H 0.102 0.898 32 H 0.028 0.972 33 H 0.173 0.827 34 H 0.076 0.924 35 H 0.074 0.926 36 H 0.042 0.958 37 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -8.366 13.901 5.511 17.135 hybrid contribution 0.507 -1.238 -0.751 1.535 sum -7.859 12.663 4.759 15.645 Atomic orbital electron populations 1.20831 0.89379 1.03414 1.03154 1.20142 0.97445 0.92447 0.98420 1.21384 0.94280 0.98041 1.00880 1.21386 0.94626 0.97837 0.98586 1.21190 1.00383 0.91291 1.01157 1.19167 0.90939 0.91312 1.00172 1.59865 1.56388 1.03758 1.03923 1.22114 0.97254 0.92864 0.92949 1.22003 0.96665 0.94920 0.94023 1.60981 1.62152 1.08352 1.01275 1.18894 0.90574 0.89187 0.89918 1.01938 1.21360 1.26760 1.07221 1.01967 0.92601 1.25755 0.93787 0.97893 1.00172 1.69785 1.29162 1.21319 1.36009 0.85487 0.78253 0.77720 0.79374 1.19669 1.20587 1.19697 1.22012 0.97726 0.94220 0.89192 1.21611 0.94438 0.98565 1.03823 0.90066 0.89581 0.92184 0.82998 0.82951 0.85951 0.94592 0.89500 0.89779 0.97206 0.82732 0.92361 0.92587 0.95839 0.87648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.02 10.01 71.24 0.71 -1.30 16 2 C -0.08 -2.07 5.88 -19.88 -0.12 -2.19 16 3 C -0.13 -2.72 9.70 22.29 0.22 -2.50 16 4 C -0.11 -2.41 10.04 22.25 0.22 -2.19 16 5 C -0.12 -3.62 9.97 22.40 0.22 -3.40 16 6 C 0.08 2.69 4.72 38.22 0.18 2.87 16 7 N -0.52 -20.93 4.68 -694.79 -3.25 -24.18 16 8 C 0.08 2.83 5.26 86.31 0.45 3.28 16 9 C 0.05 2.26 6.72 86.31 0.58 2.84 16 10 N -0.69 -35.03 6.53 -495.00 -3.23 -38.26 16 11 C 0.22 12.01 2.55 44.17 0.11 12.12 16 12 H -0.04 -2.25 8.14 -2.39 -0.02 -2.27 16 13 C -0.53 -30.44 8.76 25.60 0.22 -30.22 16 14 H 0.06 3.13 7.74 -2.91 -0.02 3.11 16 15 C 0.02 1.31 5.35 84.65 0.45 1.76 16 16 N -0.92 -52.96 11.49 21.45 0.25 -52.71 16 17 Si 0.97 43.89 29.54 68.60 2.03 45.92 16 18 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 19 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 20 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 21 C 0.10 4.44 4.62 86.31 0.40 4.84 16 22 C -0.16 -5.16 8.33 22.40 0.19 -4.98 16 23 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 24 H 0.09 1.19 8.08 -2.39 -0.02 1.18 16 25 H 0.06 1.16 8.08 -2.39 -0.02 1.14 16 26 H 0.15 2.16 8.06 -2.91 -0.02 2.14 16 27 H 0.15 2.46 8.06 -2.91 -0.02 2.43 16 28 H 0.12 3.63 8.06 -2.91 -0.02 3.60 16 29 H 0.04 1.36 7.05 -2.39 -0.02 1.35 16 30 H 0.09 2.84 8.13 -2.39 -0.02 2.82 16 31 H 0.08 3.05 8.14 -2.38 -0.02 3.03 16 32 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 33 H 0.35 19.16 6.71 -89.69 -0.60 18.56 16 34 H 0.27 14.51 8.31 -92.71 -0.77 13.74 16 35 H 0.06 2.63 8.13 -2.39 -0.02 2.61 16 36 H 0.02 1.12 7.68 -2.39 -0.02 1.10 16 37 H 0.11 3.52 7.06 -2.91 -0.02 3.50 16 Total: -1.00 -63.02 299.18 0.08 -62.94 By element: Atomic # 1 Polarization: 24.91 SS G_CDS: 0.44 Total: 25.36 kcal Atomic # 6 Polarization: -22.91 SS G_CDS: 3.85 Total: -19.06 kcal Atomic # 7 Polarization: -108.92 SS G_CDS: -6.24 Total: -115.16 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.92 kcal Total: -63.02 0.08 -62.94 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000221058118.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.775 kcal (2) G-P(sol) polarization free energy of solvation -63.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.940 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds