Wall clock time and date at job start Mon Mar 30 2020 04:05:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.48746 * 2 1 4 4 C 1.53046 * 109.48830 * 239.95299 * 2 1 3 5 5 N 1.46961 * 109.36383 * 298.41168 * 4 2 1 6 6 C 1.46957 * 110.88277 * 300.67967 * 5 4 2 7 7 H 1.09008 * 109.48975 * 299.33350 * 6 5 4 8 8 C 1.50693 * 109.49332 * 179.29045 * 6 5 4 9 9 H 1.08006 * 119.99683 * 240.00242 * 8 6 5 10 10 C 1.37871 * 120.00186 * 59.99325 * 8 6 5 11 11 N 1.31515 * 120.00262 * 0.02562 * 10 8 6 12 12 Si 1.86798 * 120.00218 * 180.02562 * 10 8 6 13 13 H 1.48500 * 109.47313 * 180.02562 * 12 10 8 14 14 H 1.48500 * 109.46938 * 60.00784 * 12 10 8 15 15 H 1.48504 * 109.47464 * 300.00407 * 12 10 8 16 16 C 1.53055 * 109.36091 * 59.31750 * 6 5 4 17 17 N 1.46952 * 109.36904 * 301.60037 * 16 6 5 18 18 C 1.39669 * 111.00085 * 183.18994 * 17 16 6 19 19 C 1.38909 * 120.07638 * 347.01721 * 18 17 16 20 20 C 1.38106 * 119.92763 * 179.76985 * 19 18 17 21 21 C 1.38290 * 120.07329 * 0.50973 * 20 19 18 22 22 C 1.38281 * 120.14695 * 359.74412 * 21 20 19 23 23 C 1.38108 * 120.07936 * 359.97438 * 22 21 20 24 24 H 1.08998 * 109.47110 * 177.60251 * 1 2 3 25 25 H 1.09004 * 109.47296 * 297.59426 * 1 2 3 26 26 H 1.08995 * 109.47144 * 57.59188 * 1 2 3 27 27 H 1.09002 * 109.48735 * 178.44517 * 4 2 1 28 28 H 1.08996 * 109.48983 * 58.38107 * 4 2 1 29 29 H 1.00899 * 111.00140 * 64.54597 * 5 4 2 30 30 H 0.97007 * 119.99324 * 359.97438 * 11 10 8 31 31 H 1.08993 * 109.48818 * 61.57111 * 16 6 5 32 32 H 1.09009 * 109.48488 * 181.63143 * 16 6 5 33 33 H 1.07998 * 120.03703 * 0.02562 * 19 18 17 34 34 H 1.07996 * 119.96277 * 180.25091 * 20 19 18 35 35 H 1.07992 * 119.92508 * 179.72396 * 21 20 19 36 36 H 1.08006 * 119.96444 * 180.02562 * 22 21 20 37 37 H 1.07997 * 120.03716 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8936 1.0276 0.0000 4 6 2.0406 -0.7224 -1.2489 5 7 1.5813 -2.1182 -1.2264 6 6 2.0720 -2.8119 -0.0274 7 1 3.1620 -2.8119 -0.0278 8 6 1.5693 -4.2326 -0.0273 9 1 0.9491 -4.5858 0.7833 10 6 1.9009 -5.0813 -1.0620 11 7 2.6563 -4.6512 -2.0489 12 14 1.2772 -6.8420 -1.0622 13 1 1.7711 -7.5420 -2.2751 14 1 -0.2078 -6.8411 -1.0610 15 1 1.7727 -7.5430 0.1496 16 6 1.5614 -2.0894 1.2215 17 7 2.0207 -0.6937 1.1991 18 6 1.6339 -0.0207 2.3602 19 6 0.6939 -0.5863 3.2123 20 6 0.3171 0.0796 4.3620 21 6 0.8668 1.3131 4.6601 22 6 1.7989 1.8814 3.8114 23 6 2.1844 1.2182 2.6629 24 1 -0.3633 -1.0267 -0.0430 25 1 -0.3634 0.4760 0.9108 26 1 -0.3633 0.5507 -0.8676 27 1 3.1303 -0.6983 -1.2629 28 1 1.6541 -0.2267 -2.1393 29 1 0.5754 -2.1689 -1.2872 30 1 2.9799 -3.7367 -2.0489 31 1 0.4718 -2.1135 1.2356 32 1 1.9479 -2.5852 2.1120 33 1 0.2611 -1.5477 2.9780 34 1 -0.4106 -0.3615 5.0269 35 1 0.5672 1.8337 5.5575 36 1 2.2266 2.8447 4.0473 37 1 2.9122 1.6629 2.0003 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000221058353.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:05:49 Heat of formation + Delta-G solvation = 20.282708 kcal Electronic energy + Delta-G solvation = -18332.517859 eV Core-core repulsion = 15687.717515 eV Total energy + Delta-G solvation = -2644.800344 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.68695 -39.18228 -36.01354 -34.39283 -32.68448 -31.75451 -30.38645 -28.72644 -26.43713 -25.80044 -24.11751 -22.59523 -22.42491 -20.21962 -19.24210 -18.16611 -16.98834 -16.47040 -16.08515 -16.01185 -15.61769 -15.42992 -15.23730 -14.77531 -14.45761 -14.31659 -14.01982 -13.49464 -13.20934 -13.11579 -12.72598 -12.64704 -12.40668 -12.20896 -12.08729 -11.89673 -11.83400 -11.77650 -10.66961 -10.48133 -10.37317 -9.88007 -9.09787 -8.80986 -8.37655 -6.26567 0.43149 0.46476 1.57146 1.64571 1.83676 2.60150 2.71600 2.94860 3.25909 3.67639 3.90772 3.97573 4.03436 4.07223 4.17170 4.22772 4.28297 4.29928 4.54231 4.56387 4.59277 4.65248 4.74431 4.85229 4.89562 4.93621 5.10613 5.11488 5.21169 5.45215 5.49834 5.61401 5.85916 5.91940 6.08889 6.19210 6.40693 6.60274 6.76867 6.88850 7.65714 8.96683 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.033402 B = 0.006430 C = 0.005783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 838.079914 B = 4353.818392 C = 4840.757762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.056 3.944 3 H 0.099 0.901 4 C 0.061 3.939 5 N -0.681 5.681 6 C 0.215 3.785 7 H -0.004 1.004 8 C -0.631 4.631 9 H 0.041 0.959 10 C -0.008 4.008 11 N -0.916 5.916 12 Si 1.111 2.889 13 H -0.286 1.286 14 H -0.273 1.273 15 H -0.277 1.277 16 C 0.056 3.944 17 N -0.500 5.500 18 C 0.097 3.903 19 C -0.188 4.188 20 C -0.103 4.103 21 C -0.146 4.146 22 C -0.098 4.098 23 C -0.144 4.144 24 H 0.042 0.958 25 H 0.056 0.944 26 H 0.082 0.918 27 H 0.055 0.945 28 H 0.091 0.909 29 H 0.328 0.672 30 H 0.278 0.722 31 H 0.036 0.964 32 H 0.052 0.948 33 H 0.107 0.893 34 H 0.138 0.862 35 H 0.149 0.851 36 H 0.151 0.849 37 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.160 13.467 9.555 17.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.052 4.052 3 H 0.117 0.883 4 C -0.069 4.069 5 N -0.311 5.311 6 C 0.107 3.893 7 H 0.014 0.986 8 C -0.670 4.670 9 H 0.060 0.940 10 C -0.212 4.212 11 N -0.551 5.551 12 Si 0.934 3.066 13 H -0.212 1.212 14 H -0.199 1.199 15 H -0.202 1.202 16 C -0.073 4.073 17 N -0.216 5.216 18 C 0.001 3.999 19 C -0.209 4.209 20 C -0.121 4.121 21 C -0.165 4.165 22 C -0.116 4.116 23 C -0.164 4.164 24 H 0.061 0.939 25 H 0.075 0.925 26 H 0.101 0.899 27 H 0.073 0.927 28 H 0.109 0.891 29 H 0.147 0.853 30 H 0.089 0.911 31 H 0.054 0.946 32 H 0.070 0.930 33 H 0.126 0.874 34 H 0.156 0.844 35 H 0.167 0.833 36 H 0.169 0.831 37 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -4.063 11.815 8.176 14.931 hybrid contribution -1.075 1.442 1.483 2.331 sum -5.138 13.256 9.659 17.188 Atomic orbital electron populations 1.22308 0.96184 1.01655 1.02892 1.22532 0.94000 0.98608 0.90020 0.88344 1.22175 0.99944 0.89106 0.95713 1.60982 1.15626 1.12051 1.42466 1.19039 0.93596 0.92259 0.84388 0.98631 1.22079 1.37576 0.96762 1.10555 0.94044 1.26969 0.94162 1.08081 0.92005 1.70675 1.31359 1.20925 1.32143 0.83014 0.76280 0.71088 0.76174 1.21194 1.19876 1.20244 1.22617 0.97313 0.86909 1.00488 1.59582 1.57477 1.02690 1.01831 1.19246 0.93779 0.94356 0.92564 1.21548 0.98943 1.01922 0.98479 1.21276 0.99596 0.95481 0.95787 1.21414 0.98371 0.95693 1.00984 1.21358 0.96798 1.00352 0.93137 1.20990 1.01518 0.94487 0.99415 0.93872 0.92538 0.89910 0.92677 0.89110 0.85348 0.91060 0.94570 0.92980 0.87450 0.84448 0.83282 0.83087 0.85542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.15 8.30 71.98 0.60 -4.56 16 2 C 0.06 1.82 2.86 44.92 0.13 1.95 16 3 H 0.10 2.81 7.56 -2.39 -0.02 2.79 16 4 C 0.06 2.26 6.21 86.31 0.54 2.80 16 5 N -0.68 -31.45 5.05 -495.00 -2.50 -33.95 16 6 C 0.22 11.00 2.07 44.17 0.09 11.09 16 7 H 0.00 -0.25 8.01 -2.38 -0.02 -0.27 16 8 C -0.63 -35.49 8.69 25.60 0.22 -35.27 16 9 H 0.04 2.31 7.74 -2.91 -0.02 2.29 16 10 C -0.01 -0.46 5.39 84.65 0.46 0.00 16 11 N -0.92 -56.13 13.51 21.45 0.29 -55.84 16 12 Si 1.11 50.49 29.90 68.60 2.05 52.55 16 13 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 14 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16 15 H -0.28 -11.87 7.11 99.48 0.71 -11.17 16 16 C 0.06 2.41 3.18 86.31 0.27 2.69 16 17 N -0.50 -18.59 4.68 -670.95 -3.14 -21.74 16 18 C 0.10 3.18 4.18 38.22 0.16 3.34 16 19 C -0.19 -5.88 8.51 22.40 0.19 -5.69 16 20 C -0.10 -2.53 10.04 22.25 0.22 -2.31 16 21 C -0.15 -3.03 10.04 22.29 0.22 -2.81 16 22 C -0.10 -2.11 10.04 22.25 0.22 -1.88 16 23 C -0.14 -3.92 9.34 22.40 0.21 -3.71 16 24 H 0.04 1.48 5.11 -2.39 -0.01 1.47 16 25 H 0.06 1.66 6.97 -2.38 -0.02 1.64 16 26 H 0.08 2.09 8.14 -2.39 -0.02 2.08 16 27 H 0.05 2.20 8.14 -2.39 -0.02 2.18 16 28 H 0.09 2.89 8.14 -2.39 -0.02 2.87 16 29 H 0.33 14.93 7.12 -89.69 -0.64 14.29 16 30 H 0.28 17.33 6.40 -92.70 -0.59 16.74 16 31 H 0.04 1.56 5.25 -2.39 -0.01 1.55 16 32 H 0.05 2.38 7.81 -2.38 -0.02 2.36 16 33 H 0.11 3.66 5.91 -2.91 -0.02 3.65 16 34 H 0.14 2.73 8.06 -2.91 -0.02 2.70 16 35 H 0.15 2.11 8.06 -2.91 -0.02 2.08 16 36 H 0.15 2.24 8.06 -2.91 -0.02 2.22 16 37 H 0.13 3.22 7.92 -2.91 -0.02 3.19 16 Total: -1.00 -64.76 287.71 0.84 -63.92 By element: Atomic # 1 Polarization: 28.82 SS G_CDS: 0.60 Total: 29.42 kcal Atomic # 6 Polarization: -37.90 SS G_CDS: 3.54 Total: -34.36 kcal Atomic # 7 Polarization: -106.18 SS G_CDS: -5.35 Total: -111.53 kcal Atomic # 14 Polarization: 50.49 SS G_CDS: 2.05 Total: 52.55 kcal Total: -64.76 0.84 -63.92 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000221058353.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.207 kcal (2) G-P(sol) polarization free energy of solvation -64.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.925 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds