Wall clock time and date at job start Mon Mar 30 2020 04:05:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08992 * 109.49347 * 2 1 4 4 C 1.53059 * 109.50777 * 120.05657 * 2 1 3 5 5 N 1.46955 * 109.36563 * 178.37929 * 4 2 1 6 6 C 1.46955 * 110.87898 * 300.67816 * 5 4 2 7 7 H 1.09008 * 109.48713 * 299.35236 * 6 5 4 8 8 C 1.50703 * 109.48792 * 179.29135 * 6 5 4 9 9 H 1.08004 * 119.99730 * 239.99776 * 8 6 5 10 10 C 1.37868 * 120.00276 * 59.99928 * 8 6 5 11 11 N 1.31522 * 120.00025 * 359.97438 * 10 8 6 12 12 Si 1.86800 * 120.00323 * 180.02562 * 10 8 6 13 13 H 1.48494 * 109.47266 * 59.99524 * 12 10 8 14 14 H 1.48502 * 109.47327 * 179.97438 * 12 10 8 15 15 H 1.48506 * 109.46646 * 299.99843 * 12 10 8 16 16 C 1.53049 * 109.36716 * 59.32097 * 6 5 4 17 17 N 1.46955 * 109.36348 * 301.59809 * 16 6 5 18 18 C 1.39675 * 110.99996 * 183.18459 * 17 16 6 19 19 C 1.38915 * 120.07306 * 123.67729 * 18 17 16 20 20 C 1.38105 * 119.92536 * 179.76854 * 19 18 17 21 21 C 1.38286 * 120.07505 * 0.51375 * 20 19 18 22 22 C 1.38295 * 120.14647 * 359.74033 * 21 20 19 23 23 C 1.38101 * 120.07604 * 0.02562 * 22 21 20 24 24 H 1.09003 * 109.47188 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.46973 * 300.04550 * 1 2 3 26 26 H 1.08997 * 109.47131 * 60.04370 * 1 2 3 27 27 H 1.09003 * 109.48841 * 58.40846 * 4 2 1 28 28 H 1.08998 * 109.48261 * 298.34665 * 4 2 1 29 29 H 1.00901 * 110.99738 * 176.81237 * 5 4 2 30 30 H 0.96993 * 119.99970 * 180.02562 * 11 10 8 31 31 H 1.08994 * 109.48827 * 61.56422 * 16 6 5 32 32 H 1.09001 * 109.49220 * 181.61351 * 16 6 5 33 33 H 1.08003 * 120.03733 * 0.02562 * 19 18 17 34 34 H 1.07991 * 119.96431 * 180.25191 * 20 19 18 35 35 H 1.07991 * 119.93230 * 179.72026 * 21 20 19 36 36 H 1.07997 * 119.96173 * 179.97438 * 22 21 20 37 37 H 1.08000 * 120.03797 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0274 0.0000 4 6 2.0411 -0.7226 1.2487 5 7 3.5101 -0.7548 1.2261 6 6 4.0004 -1.4484 0.0268 7 1 3.6367 -2.4760 0.0269 8 6 5.5074 -1.4480 0.0266 9 1 6.0471 -0.9809 -0.7839 10 6 6.1971 -2.0439 1.0610 11 7 5.5399 -2.6123 2.0483 12 14 8.0651 -2.0428 1.0611 13 1 8.5593 -0.6425 1.0601 14 1 8.5605 -2.7412 2.2744 15 1 8.5605 -2.7434 -0.1510 16 6 3.4893 -0.7259 -1.2219 17 7 2.0203 -0.6937 -1.1992 18 6 1.5146 -0.1043 -2.3602 19 6 0.6150 -0.7992 -3.1586 20 6 0.1132 -0.2117 -4.3033 21 6 0.5135 1.0628 -4.6607 22 6 1.4130 1.7553 -3.8709 23 6 1.9150 1.1756 -2.7224 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5145 0.8896 26 1 -0.3633 0.5131 -0.8904 27 1 1.6551 -1.7419 1.2626 28 1 1.7026 -0.1931 2.1393 29 1 3.8754 -1.1806 2.0648 30 1 6.0251 -3.0312 2.7762 31 1 3.8752 0.2934 -1.2357 32 1 3.8280 -1.2552 -2.1125 33 1 0.3051 -1.7962 -2.8822 34 1 -0.5893 -0.7498 -4.9222 35 1 0.1231 1.5182 -5.5587 36 1 1.7239 2.7504 -4.1531 37 1 2.6177 1.7168 -2.1062 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000221058411.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:05:51 Heat of formation + Delta-G solvation = 35.929386 kcal Electronic energy + Delta-G solvation = -18117.877972 eV Core-core repulsion = 15473.756119 eV Total energy + Delta-G solvation = -2644.121853 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.85913 -37.48895 -34.18769 -32.50670 -31.27154 -30.69809 -29.07809 -27.29742 -24.32621 -24.01039 -22.36435 -21.58150 -20.57713 -18.61987 -17.18862 -16.28837 -15.44747 -14.93743 -14.80856 -14.53498 -14.13166 -13.94331 -13.62354 -13.23611 -12.89995 -12.53684 -12.25212 -11.93156 -11.69129 -11.67082 -11.25286 -10.99698 -10.91829 -10.81422 -10.67149 -10.43099 -9.98790 -9.47763 -9.20012 -8.73876 -8.60252 -8.36206 -7.87438 -6.89036 -6.11080 -4.14144 1.53320 1.60448 3.31079 3.35319 3.38345 3.97041 4.28876 4.45614 5.11577 5.12759 5.14514 5.27823 5.42836 5.48447 5.63266 5.74333 5.76487 5.96401 5.99437 6.10133 6.20855 6.24217 6.32833 6.40024 6.46497 6.56369 6.59315 6.67716 6.70889 6.80361 6.91726 7.10915 7.41333 7.62291 7.86307 7.99161 8.17221 8.63231 8.96329 9.09136 9.53715 10.99656 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.031206 B = 0.006283 C = 0.005606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.053733 B = 4455.548634 C = 4993.757665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.094 3.906 3 H 0.044 0.956 4 C 0.062 3.938 5 N -0.687 5.687 6 C 0.221 3.779 7 H 0.005 0.995 8 C -0.507 4.507 9 H 0.059 0.941 10 C 0.068 3.932 11 N -0.900 5.900 12 Si 0.900 3.100 13 H -0.276 1.276 14 H -0.287 1.287 15 H -0.277 1.277 16 C 0.075 3.925 17 N -0.509 5.509 18 C 0.113 3.887 19 C -0.103 4.103 20 C -0.118 4.118 21 C -0.137 4.137 22 C -0.113 4.113 23 C -0.151 4.151 24 H 0.060 0.940 25 H 0.056 0.944 26 H 0.051 0.949 27 H 0.023 0.977 28 H 0.058 0.942 29 H 0.365 0.635 30 H 0.265 0.735 31 H 0.034 0.966 32 H 0.064 0.936 33 H 0.125 0.875 34 H 0.119 0.881 35 H 0.116 0.884 36 H 0.116 0.884 37 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.207 5.634 -7.694 13.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.013 4.013 3 H 0.062 0.938 4 C -0.069 4.069 5 N -0.324 5.324 6 C 0.112 3.888 7 H 0.023 0.977 8 C -0.546 4.546 9 H 0.077 0.923 10 C -0.133 4.133 11 N -0.540 5.540 12 Si 0.728 3.272 13 H -0.202 1.202 14 H -0.213 1.213 15 H -0.203 1.203 16 C -0.051 4.051 17 N -0.231 5.231 18 C 0.019 3.981 19 C -0.122 4.122 20 C -0.137 4.137 21 C -0.155 4.155 22 C -0.132 4.132 23 C -0.171 4.171 24 H 0.079 0.921 25 H 0.075 0.925 26 H 0.070 0.930 27 H 0.041 0.959 28 H 0.076 0.924 29 H 0.189 0.811 30 H 0.075 0.925 31 H 0.052 0.948 32 H 0.082 0.918 33 H 0.143 0.857 34 H 0.137 0.863 35 H 0.134 0.866 36 H 0.134 0.866 37 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -10.256 5.651 -7.731 14.031 hybrid contribution 1.117 -0.107 0.243 1.148 sum -9.139 5.544 -7.488 13.050 Atomic orbital electron populations 1.21837 0.95169 1.02073 1.01045 1.21668 0.93920 0.95860 0.89879 0.93836 1.21892 0.92661 0.97579 0.94780 1.60994 1.03052 1.59570 1.08815 1.19027 0.93822 0.91017 0.84887 0.97692 1.21052 0.90431 1.35913 1.07197 0.92277 1.24963 0.98786 0.94285 0.95293 1.69664 1.35790 1.37733 1.10836 0.86531 0.85122 0.78229 0.77325 1.20170 1.21282 1.20280 1.22402 0.82417 0.99642 1.00650 1.59999 1.11176 1.52383 0.99536 1.19031 0.95189 0.91187 0.92737 1.21094 0.96966 0.99992 0.94123 1.21040 1.00239 0.95466 0.96953 1.21051 0.99094 0.95411 0.99931 1.20986 0.97576 0.99630 0.95006 1.21798 1.01086 0.96318 0.97944 0.92137 0.92485 0.93035 0.95928 0.92381 0.81128 0.92532 0.94811 0.91767 0.85710 0.86298 0.86623 0.86611 0.86264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.16 8.98 37.16 0.33 -1.83 16 2 C 0.09 1.73 2.37 -67.65 -0.16 1.57 16 3 H 0.04 0.84 7.68 -51.93 -0.40 0.44 16 4 C 0.06 1.26 6.00 -3.76 -0.02 1.24 16 5 N -0.69 -16.74 6.53 -107.81 -0.70 -17.44 16 6 C 0.22 5.65 2.55 -68.81 -0.18 5.47 16 7 H 0.01 0.16 8.14 -51.92 -0.42 -0.27 16 8 C -0.51 -13.93 8.76 -34.44 -0.30 -14.23 16 9 H 0.06 1.60 7.74 -52.48 -0.41 1.19 16 10 C 0.07 1.87 5.35 -17.82 -0.10 1.77 16 11 N -0.90 -25.19 11.49 55.43 0.64 -24.55 16 12 Si 0.90 21.17 29.54 -169.99 -5.02 16.14 16 13 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 14 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 15 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 16 C 0.07 1.66 4.48 -3.77 -0.02 1.64 16 17 N -0.51 -9.85 4.51 -163.42 -0.74 -10.58 16 18 C 0.11 1.91 3.23 -83.78 -0.27 1.64 16 19 C -0.10 -1.54 9.79 -39.38 -0.39 -1.92 16 20 C -0.12 -1.49 10.04 -39.61 -0.40 -1.89 16 21 C -0.14 -1.66 10.04 -39.54 -0.40 -2.06 16 22 C -0.11 -1.51 10.04 -39.61 -0.40 -1.90 16 23 C -0.15 -2.40 8.68 -39.38 -0.34 -2.74 16 24 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 25 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.05 0.76 7.03 -51.93 -0.37 0.39 16 27 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 29 H 0.36 9.58 6.71 -39.29 -0.26 9.31 16 30 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 31 H 0.03 0.76 7.05 -51.93 -0.37 0.40 16 32 H 0.06 1.42 8.13 -51.93 -0.42 1.00 16 33 H 0.12 1.81 8.06 -52.48 -0.42 1.39 16 34 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 35 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 36 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 37 H 0.12 1.96 7.06 -52.49 -0.37 1.59 16 LS Contribution 296.36 15.07 4.47 4.47 Total: -1.00 -28.08 296.36 -9.52 -37.60 By element: Atomic # 1 Polarization: 13.14 SS G_CDS: -5.53 Total: 7.61 kcal Atomic # 6 Polarization: -10.61 SS G_CDS: -2.63 Total: -13.24 kcal Atomic # 7 Polarization: -51.77 SS G_CDS: -0.80 Total: -52.58 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -28.08 -9.52 -37.60 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000221058411.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.528 kcal (2) G-P(sol) polarization free energy of solvation -28.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.598 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds