Wall clock time and date at job start Mon Mar 30 2020 04:05:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08992 * 109.49347 * 2 1 4 4 C 1.53059 * 109.50777 * 120.05657 * 2 1 3 5 5 N 1.46955 * 109.36563 * 178.37929 * 4 2 1 6 6 C 1.46955 * 110.87898 * 300.67816 * 5 4 2 7 7 H 1.09008 * 109.48713 * 299.35236 * 6 5 4 8 8 C 1.50703 * 109.48792 * 179.29135 * 6 5 4 9 9 H 1.08004 * 119.99730 * 239.99776 * 8 6 5 10 10 C 1.37868 * 120.00276 * 59.99928 * 8 6 5 11 11 N 1.31522 * 120.00025 * 359.97438 * 10 8 6 12 12 Si 1.86800 * 120.00323 * 180.02562 * 10 8 6 13 13 H 1.48494 * 109.47266 * 59.99524 * 12 10 8 14 14 H 1.48502 * 109.47327 * 179.97438 * 12 10 8 15 15 H 1.48506 * 109.46646 * 299.99843 * 12 10 8 16 16 C 1.53049 * 109.36716 * 59.32097 * 6 5 4 17 17 N 1.46955 * 109.36348 * 301.59809 * 16 6 5 18 18 C 1.39675 * 110.99996 * 183.18459 * 17 16 6 19 19 C 1.38915 * 120.07306 * 123.67729 * 18 17 16 20 20 C 1.38105 * 119.92536 * 179.76854 * 19 18 17 21 21 C 1.38286 * 120.07505 * 0.51375 * 20 19 18 22 22 C 1.38295 * 120.14647 * 359.74033 * 21 20 19 23 23 C 1.38101 * 120.07604 * 0.02562 * 22 21 20 24 24 H 1.09003 * 109.47188 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.46973 * 300.04550 * 1 2 3 26 26 H 1.08997 * 109.47131 * 60.04370 * 1 2 3 27 27 H 1.09003 * 109.48841 * 58.40846 * 4 2 1 28 28 H 1.08998 * 109.48261 * 298.34665 * 4 2 1 29 29 H 1.00901 * 110.99738 * 176.81237 * 5 4 2 30 30 H 0.96993 * 119.99970 * 180.02562 * 11 10 8 31 31 H 1.08994 * 109.48827 * 61.56422 * 16 6 5 32 32 H 1.09001 * 109.49220 * 181.61351 * 16 6 5 33 33 H 1.08003 * 120.03733 * 0.02562 * 19 18 17 34 34 H 1.07991 * 119.96431 * 180.25191 * 20 19 18 35 35 H 1.07991 * 119.93230 * 179.72026 * 21 20 19 36 36 H 1.07997 * 119.96173 * 179.97438 * 22 21 20 37 37 H 1.08000 * 120.03797 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0274 0.0000 4 6 2.0411 -0.7226 1.2487 5 7 3.5101 -0.7548 1.2261 6 6 4.0004 -1.4484 0.0268 7 1 3.6367 -2.4760 0.0269 8 6 5.5074 -1.4480 0.0266 9 1 6.0471 -0.9809 -0.7839 10 6 6.1971 -2.0439 1.0610 11 7 5.5399 -2.6123 2.0483 12 14 8.0651 -2.0428 1.0611 13 1 8.5593 -0.6425 1.0601 14 1 8.5605 -2.7412 2.2744 15 1 8.5605 -2.7434 -0.1510 16 6 3.4893 -0.7259 -1.2219 17 7 2.0203 -0.6937 -1.1992 18 6 1.5146 -0.1043 -2.3602 19 6 0.6150 -0.7992 -3.1586 20 6 0.1132 -0.2117 -4.3033 21 6 0.5135 1.0628 -4.6607 22 6 1.4130 1.7553 -3.8709 23 6 1.9150 1.1756 -2.7224 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5145 0.8896 26 1 -0.3633 0.5131 -0.8904 27 1 1.6551 -1.7419 1.2626 28 1 1.7026 -0.1931 2.1393 29 1 3.8754 -1.1806 2.0648 30 1 6.0251 -3.0312 2.7762 31 1 3.8752 0.2934 -1.2357 32 1 3.8280 -1.2552 -2.1125 33 1 0.3051 -1.7962 -2.8822 34 1 -0.5893 -0.7498 -4.9222 35 1 0.1231 1.5182 -5.5587 36 1 1.7239 2.7504 -4.1531 37 1 2.6177 1.7168 -2.1062 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000221058411.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:05:51 Heat of formation + Delta-G solvation = 17.948423 kcal Electronic energy + Delta-G solvation = -18118.657685 eV Core-core repulsion = 15473.756119 eV Total energy + Delta-G solvation = -2644.901566 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.21841 -38.89051 -35.95417 -34.20739 -33.06790 -31.78709 -30.45257 -28.98020 -26.13245 -25.64260 -23.49612 -23.03035 -22.11241 -20.26722 -18.86570 -17.81565 -17.05032 -16.48978 -16.23252 -15.99667 -15.84021 -15.56040 -15.03127 -14.54325 -14.39879 -14.11412 -13.84957 -13.34753 -13.22113 -13.01359 -12.78234 -12.63116 -12.50675 -12.30752 -12.14285 -12.04893 -11.74961 -11.31883 -11.14438 -10.68701 -9.81846 -9.58712 -9.35537 -8.86862 -8.20302 -6.32223 0.41925 0.52324 1.42328 1.44364 1.52125 2.40349 2.87613 2.91428 3.06066 3.84872 3.97350 4.08371 4.14157 4.25436 4.30298 4.32697 4.51471 4.53958 4.62374 4.70971 4.77701 4.80263 4.84208 4.89842 4.98796 5.05686 5.17691 5.28369 5.40193 5.53106 5.63578 5.69262 5.73435 5.91263 6.01919 6.18346 6.56205 6.60768 6.90610 7.05163 7.39684 8.89298 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.031206 B = 0.006283 C = 0.005606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.053733 B = 4455.548634 C = 4993.757665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.096 3.904 3 H 0.034 0.966 4 C 0.060 3.940 5 N -0.693 5.693 6 C 0.224 3.776 7 H -0.038 1.038 8 C -0.534 4.534 9 H 0.056 0.944 10 C 0.023 3.977 11 N -0.923 5.923 12 Si 0.966 3.034 13 H -0.272 1.272 14 H -0.281 1.281 15 H -0.272 1.272 16 C 0.092 3.908 17 N -0.513 5.513 18 C 0.083 3.917 19 C -0.113 4.113 20 C -0.111 4.111 21 C -0.126 4.126 22 C -0.113 4.113 23 C -0.167 4.167 24 H 0.059 0.941 25 H 0.078 0.922 26 H 0.058 0.942 27 H 0.010 0.990 28 H 0.080 0.920 29 H 0.351 0.649 30 H 0.267 0.733 31 H 0.024 0.976 32 H 0.055 0.945 33 H 0.123 0.877 34 H 0.152 0.848 35 H 0.153 0.847 36 H 0.140 0.860 37 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.329 6.768 -9.327 16.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.011 4.011 3 H 0.052 0.948 4 C -0.070 4.070 5 N -0.329 5.329 6 C 0.115 3.885 7 H -0.020 1.020 8 C -0.573 4.573 9 H 0.074 0.926 10 C -0.176 4.176 11 N -0.563 5.563 12 Si 0.791 3.209 13 H -0.197 1.197 14 H -0.206 1.206 15 H -0.197 1.197 16 C -0.035 4.035 17 N -0.235 5.235 18 C -0.011 4.011 19 C -0.131 4.131 20 C -0.129 4.129 21 C -0.144 4.144 22 C -0.131 4.131 23 C -0.187 4.187 24 H 0.078 0.922 25 H 0.097 0.903 26 H 0.077 0.923 27 H 0.028 0.972 28 H 0.098 0.902 29 H 0.172 0.828 30 H 0.076 0.924 31 H 0.042 0.958 32 H 0.074 0.926 33 H 0.141 0.859 34 H 0.169 0.831 35 H 0.170 0.830 36 H 0.157 0.843 37 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -11.405 6.797 -9.382 16.257 hybrid contribution 1.386 -0.444 0.693 1.612 sum -10.018 6.353 -8.689 14.704 Atomic orbital electron populations 1.21724 0.92125 1.02446 1.02437 1.21676 0.96191 0.94634 0.88617 0.94814 1.22036 0.90254 0.97521 0.97174 1.60969 1.05572 1.58688 1.07632 1.18876 0.93340 0.89327 0.86926 1.02011 1.21365 0.91716 1.36632 1.07576 0.92621 1.25752 1.03399 0.93686 0.94779 1.69781 1.37426 1.37892 1.11176 0.85493 0.79477 0.78335 0.77560 1.19730 1.20592 1.19673 1.22016 0.84872 0.98204 0.98404 1.59911 1.08996 1.53429 1.01176 1.19092 0.97181 0.92220 0.92592 1.21194 0.97021 1.00028 0.94904 1.21409 0.99833 0.95753 0.95928 1.21497 0.97563 0.94922 1.00412 1.21285 0.97244 1.00690 0.93910 1.21740 1.01679 0.96093 0.99225 0.92226 0.90339 0.92303 0.97214 0.90171 0.82766 0.92374 0.95771 0.92615 0.85903 0.83065 0.82962 0.84254 0.87963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.74 8.98 71.98 0.65 -3.09 16 2 C 0.10 3.56 2.37 44.92 0.11 3.66 16 3 H 0.03 1.32 7.68 -2.39 -0.02 1.30 16 4 C 0.06 2.53 6.00 86.31 0.52 3.05 16 5 N -0.69 -35.16 6.53 -494.99 -3.23 -38.39 16 6 C 0.22 12.05 2.55 44.18 0.11 12.16 16 7 H -0.04 -2.29 8.14 -2.38 -0.02 -2.31 16 8 C -0.53 -30.44 8.76 25.60 0.22 -30.22 16 9 H 0.06 3.12 7.74 -2.91 -0.02 3.09 16 10 C 0.02 1.30 5.35 84.65 0.45 1.75 16 11 N -0.92 -53.01 11.49 21.45 0.25 -52.76 16 12 Si 0.97 43.96 29.54 68.60 2.03 45.99 16 13 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 14 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 15 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 16 C 0.09 4.27 4.48 86.31 0.39 4.66 16 17 N -0.51 -20.36 4.51 -670.94 -3.03 -23.39 16 18 C 0.08 2.78 3.23 38.21 0.12 2.91 16 19 C -0.11 -3.20 9.79 22.40 0.22 -2.98 16 20 C -0.11 -2.40 10.04 22.25 0.22 -2.18 16 21 C -0.13 -2.54 10.04 22.29 0.22 -2.32 16 22 C -0.11 -2.70 10.04 22.25 0.22 -2.47 16 23 C -0.17 -5.20 8.68 22.40 0.19 -5.00 16 24 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 25 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 26 H 0.06 1.63 7.03 -2.39 -0.02 1.61 16 27 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 28 H 0.08 2.95 8.14 -2.39 -0.02 2.93 16 29 H 0.35 19.19 6.71 -89.69 -0.60 18.58 16 30 H 0.27 14.52 8.31 -92.71 -0.77 13.75 16 31 H 0.02 1.15 7.05 -2.39 -0.02 1.13 16 32 H 0.06 2.61 8.13 -2.39 -0.02 2.59 16 33 H 0.12 3.46 8.06 -2.91 -0.02 3.44 16 34 H 0.15 2.30 8.06 -2.92 -0.02 2.27 16 35 H 0.15 2.01 8.06 -2.92 -0.02 1.99 16 36 H 0.14 2.62 8.06 -2.91 -0.02 2.60 16 37 H 0.10 3.45 7.06 -2.91 -0.02 3.43 16 Total: -1.00 -62.75 296.36 0.11 -62.64 By element: Atomic # 1 Polarization: 25.54 SS G_CDS: 0.44 Total: 25.98 kcal Atomic # 6 Polarization: -23.73 SS G_CDS: 3.66 Total: -20.07 kcal Atomic # 7 Polarization: -108.53 SS G_CDS: -6.01 Total: -114.54 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.99 kcal Total: -62.75 0.11 -62.64 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000221058411.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.590 kcal (2) G-P(sol) polarization free energy of solvation -62.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.641 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds