Wall clock time and date at job start Mon Mar 30 2020 04:05:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09004 * 109.50740 * 2 1 4 4 C 1.53051 * 109.48961 * 120.05128 * 2 1 3 5 5 N 1.46963 * 109.36446 * 61.56775 * 4 2 1 6 6 C 1.46959 * 110.87902 * 59.31787 * 5 4 2 7 7 H 1.09000 * 109.48540 * 60.64867 * 6 5 4 8 8 C 1.50691 * 109.48473 * 180.69203 * 6 5 4 9 9 H 1.08005 * 120.00164 * 120.00151 * 8 6 5 10 10 C 1.37885 * 120.00302 * 300.00019 * 8 6 5 11 11 N 1.31510 * 120.00259 * 180.02562 * 10 8 6 12 12 Si 1.86797 * 119.99641 * 0.02562 * 10 8 6 13 13 H 1.48493 * 109.47121 * 90.00054 * 12 10 8 14 14 H 1.48501 * 109.47004 * 209.99963 * 12 10 8 15 15 H 1.48496 * 109.47433 * 329.99771 * 12 10 8 16 16 C 1.53052 * 109.36363 * 300.68012 * 6 5 4 17 17 N 1.46955 * 109.36291 * 58.40577 * 16 6 5 18 18 C 1.39681 * 110.99932 * 176.80667 * 17 16 6 19 19 C 1.38914 * 120.06941 * 359.96279 * 18 17 16 20 20 C 1.38106 * 119.91874 * 179.79044 * 19 18 17 21 21 C 1.38285 * 120.07733 * 0.46335 * 20 19 18 22 22 C 1.38286 * 120.14612 * 359.78507 * 21 20 19 23 23 C 1.38102 * 120.07747 * 359.97438 * 22 21 20 24 24 H 1.08998 * 109.47277 * 185.80617 * 1 2 3 25 25 H 1.08998 * 109.47176 * 305.80440 * 1 2 3 26 26 H 1.09001 * 109.47267 * 65.80454 * 1 2 3 27 27 H 1.08997 * 109.48849 * 181.53357 * 4 2 1 28 28 H 1.09002 * 109.49167 * 301.57456 * 4 2 1 29 29 H 1.00897 * 110.99606 * 183.18810 * 5 4 2 30 30 H 0.96998 * 120.00369 * 179.97438 * 11 10 8 31 31 H 1.08997 * 109.49051 * 298.43428 * 16 6 5 32 32 H 1.09004 * 109.48055 * 178.36650 * 16 6 5 33 33 H 1.07998 * 120.04370 * 0.02562 * 19 18 17 34 34 H 1.08001 * 119.96318 * 180.23125 * 20 19 18 35 35 H 1.07999 * 119.92395 * 179.76918 * 21 20 19 36 36 H 1.08004 * 119.95617 * 180.02562 * 22 21 20 37 37 H 1.08003 * 120.03488 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0406 -0.7225 1.2489 5 7 1.5808 -2.1182 1.2266 6 6 2.0711 -2.8120 0.0274 7 1 3.1611 -2.8120 0.0275 8 6 1.5683 -4.2326 0.0278 9 1 0.9479 -4.5861 -0.7825 10 6 1.9004 -5.0813 1.0626 11 7 1.4621 -6.3212 1.0626 12 14 2.9730 -4.4697 2.4643 13 1 2.1134 -3.9033 3.5345 14 1 3.7644 -5.6008 3.0118 15 1 3.8939 -3.4191 1.9610 16 6 1.5604 -2.0895 -1.2214 17 7 2.0202 -0.6939 -1.1990 18 6 1.6334 -0.0208 -2.3602 19 6 0.9106 -0.6861 -3.3424 20 6 0.5260 -0.0163 -4.4873 21 6 0.8679 1.3123 -4.6609 22 6 1.5918 1.9761 -3.6874 23 6 1.9753 1.3138 -2.5379 24 1 -0.3634 -1.0224 0.1040 25 1 -0.3633 0.6012 0.8334 26 1 -0.3634 0.4212 -0.9374 27 1 3.1302 -0.6988 1.2627 28 1 1.6547 -0.2264 2.1394 29 1 1.8603 -2.6044 2.0654 30 1 1.6960 -6.9183 1.7904 31 1 0.4708 -2.1132 -1.2352 32 1 1.9468 -2.5854 -2.1119 33 1 0.6464 -1.7247 -3.2091 34 1 -0.0392 -0.5319 -5.2497 35 1 0.5690 1.8326 -5.5589 36 1 1.8568 3.0139 -3.8260 37 1 2.5410 1.8327 -1.7782 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000221058522.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:05:54 Heat of formation + Delta-G solvation = 50.327065 kcal Electronic energy + Delta-G solvation = -18351.815153 eV Core-core repulsion = 15708.317629 eV Total energy + Delta-G solvation = -2643.497523 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.25687 -37.79180 -34.45320 -32.74633 -31.50849 -30.56253 -29.26173 -27.47668 -25.10135 -24.53081 -22.65411 -21.32413 -20.58463 -18.25195 -17.57286 -16.74240 -15.98244 -15.17741 -14.99099 -14.71606 -14.21216 -13.87235 -13.67077 -13.29966 -13.21492 -12.75915 -12.61480 -12.46552 -12.13754 -11.53564 -11.27173 -11.18546 -11.04682 -10.79593 -10.53879 -10.29202 -10.19256 -9.60190 -9.41632 -9.27917 -8.74576 -8.71769 -7.55725 -7.41005 -6.18801 -4.19821 1.59732 1.61307 3.14797 3.21773 3.26781 3.89462 4.26286 4.28199 4.85869 5.03732 5.12350 5.20937 5.29117 5.36902 5.52811 5.57488 5.62845 5.71196 5.79177 5.94180 6.05749 6.08709 6.13591 6.19715 6.23366 6.30985 6.50231 6.56812 6.63761 6.73530 6.74920 6.98118 7.06113 7.30781 7.54224 7.67592 8.05933 8.17270 8.42873 8.84412 9.41710 10.94173 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.036527 B = 0.006813 C = 0.006161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 766.377049 B = 4108.703481 C = 4543.360571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.095 3.905 3 H 0.079 0.921 4 C 0.052 3.948 5 N -0.680 5.680 6 C 0.184 3.816 7 H 0.007 0.993 8 C -0.504 4.504 9 H 0.080 0.920 10 C 0.078 3.922 11 N -0.892 5.892 12 Si 0.872 3.128 13 H -0.271 1.271 14 H -0.289 1.289 15 H -0.269 1.269 16 C 0.072 3.928 17 N -0.494 5.494 18 C 0.131 3.869 19 C -0.172 4.172 20 C -0.094 4.094 21 C -0.161 4.161 22 C -0.099 4.099 23 C -0.149 4.149 24 H 0.083 0.917 25 H 0.055 0.945 26 H 0.047 0.953 27 H 0.028 0.972 28 H 0.069 0.931 29 H 0.324 0.676 30 H 0.266 0.734 31 H 0.055 0.945 32 H 0.076 0.924 33 H 0.131 0.869 34 H 0.118 0.882 35 H 0.114 0.886 36 H 0.117 0.883 37 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.318 14.895 -5.339 15.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.011 4.011 3 H 0.097 0.903 4 C -0.079 4.079 5 N -0.319 5.319 6 C 0.077 3.923 7 H 0.025 0.975 8 C -0.543 4.543 9 H 0.098 0.902 10 C -0.125 4.125 11 N -0.530 5.530 12 Si 0.702 3.298 13 H -0.198 1.198 14 H -0.216 1.216 15 H -0.195 1.195 16 C -0.054 4.054 17 N -0.207 5.207 18 C 0.033 3.967 19 C -0.193 4.193 20 C -0.113 4.113 21 C -0.180 4.180 22 C -0.118 4.118 23 C -0.170 4.170 24 H 0.102 0.898 25 H 0.074 0.926 26 H 0.066 0.934 27 H 0.046 0.954 28 H 0.087 0.913 29 H 0.147 0.853 30 H 0.076 0.924 31 H 0.073 0.927 32 H 0.094 0.906 33 H 0.148 0.852 34 H 0.136 0.864 35 H 0.132 0.868 36 H 0.135 0.865 37 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -0.376 14.805 -5.395 15.762 hybrid contribution 0.806 0.075 1.039 1.317 sum 0.430 14.880 -4.356 15.511 Atomic orbital electron populations 1.22339 0.95980 1.04168 1.00820 1.21762 0.94145 0.96570 0.88647 0.90330 1.22011 0.97260 0.92356 0.96229 1.61351 1.63793 1.00593 1.06125 1.19646 0.93886 0.93092 0.85718 0.97513 1.20902 1.32734 0.91736 1.08938 0.90188 1.24945 0.95291 0.94698 0.97583 1.69862 1.45000 1.05360 1.32739 0.87038 0.81007 0.78556 0.83243 1.19802 1.21608 1.19488 1.22361 0.98965 0.84193 0.99923 1.59459 1.56130 1.04451 1.00708 1.19077 0.92631 0.92720 0.92321 1.21475 1.00381 1.01518 0.95892 1.20986 0.98856 0.94528 0.96915 1.20952 1.02242 0.95140 0.99656 1.20913 0.97934 0.99274 0.93671 1.20752 1.03510 0.93759 0.98965 0.89821 0.92583 0.93418 0.95428 0.91254 0.85317 0.92393 0.92718 0.90564 0.85165 0.86433 0.86781 0.86529 0.86287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.80 8.45 37.15 0.31 -2.48 16 2 C 0.09 1.57 2.76 -67.66 -0.19 1.38 16 3 H 0.08 1.14 6.83 -51.93 -0.35 0.79 16 4 C 0.05 0.94 6.15 -3.76 -0.02 0.91 16 5 N -0.68 -14.92 5.70 -107.81 -0.61 -15.54 16 6 C 0.18 4.34 2.06 -68.81 -0.14 4.20 16 7 H 0.01 0.19 7.20 -51.93 -0.37 -0.19 16 8 C -0.50 -13.85 9.35 -34.44 -0.32 -14.17 16 9 H 0.08 2.35 7.99 -52.48 -0.42 1.93 16 10 C 0.08 2.20 5.47 -17.82 -0.10 2.10 16 11 N -0.89 -26.59 13.96 55.43 0.77 -25.81 16 12 Si 0.87 21.00 24.65 -169.99 -4.19 16.81 16 13 H -0.27 -6.28 6.96 56.52 0.39 -5.89 16 14 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 15 H -0.27 -6.36 6.54 56.52 0.37 -5.99 16 16 C 0.07 1.47 3.14 -3.77 -0.01 1.45 16 17 N -0.49 -8.92 4.72 -163.42 -0.77 -9.69 16 18 C 0.13 2.14 4.28 -83.79 -0.36 1.78 16 19 C -0.17 -2.68 8.82 -39.38 -0.35 -3.03 16 20 C -0.09 -1.25 10.04 -39.61 -0.40 -1.65 16 21 C -0.16 -1.96 10.04 -39.55 -0.40 -2.36 16 22 C -0.10 -1.23 10.04 -39.61 -0.40 -1.63 16 23 C -0.15 -2.12 9.19 -39.39 -0.36 -2.48 16 24 H 0.08 1.56 6.10 -51.93 -0.32 1.24 16 25 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 26 H 0.05 0.74 7.13 -51.93 -0.37 0.37 16 27 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 29 H 0.32 7.38 3.99 -39.29 -0.16 7.23 16 30 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 31 H 0.05 1.14 5.92 -51.93 -0.31 0.83 16 32 H 0.08 1.56 7.17 -51.93 -0.37 1.18 16 33 H 0.13 2.10 5.81 -52.49 -0.31 1.79 16 34 H 0.12 1.31 8.06 -52.49 -0.42 0.89 16 35 H 0.11 1.11 8.06 -52.49 -0.42 0.69 16 36 H 0.12 1.14 8.06 -52.48 -0.42 0.71 16 37 H 0.12 1.56 7.20 -52.48 -0.38 1.18 16 LS Contribution 281.68 15.07 4.24 4.24 Total: -1.00 -29.18 281.68 -8.35 -37.54 By element: Atomic # 1 Polarization: 13.48 SS G_CDS: -5.07 Total: 8.42 kcal Atomic # 6 Polarization: -13.24 SS G_CDS: -2.73 Total: -15.97 kcal Atomic # 7 Polarization: -50.43 SS G_CDS: -0.61 Total: -51.04 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -4.19 Total: 16.81 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -29.18 -8.35 -37.54 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000221058522.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.864 kcal (2) G-P(sol) polarization free energy of solvation -29.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.537 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds