Wall clock time and date at job start Mon Mar 30 2020 04:05:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09004 * 109.50740 * 2 1 4 4 C 1.53051 * 109.48961 * 120.05128 * 2 1 3 5 5 N 1.46963 * 109.36446 * 61.56775 * 4 2 1 6 6 C 1.46959 * 110.87902 * 59.31787 * 5 4 2 7 7 H 1.09000 * 109.48540 * 60.64867 * 6 5 4 8 8 C 1.50691 * 109.48473 * 180.69203 * 6 5 4 9 9 H 1.08005 * 120.00164 * 120.00151 * 8 6 5 10 10 C 1.37885 * 120.00302 * 300.00019 * 8 6 5 11 11 N 1.31510 * 120.00259 * 180.02562 * 10 8 6 12 12 Si 1.86797 * 119.99641 * 0.02562 * 10 8 6 13 13 H 1.48493 * 109.47121 * 90.00054 * 12 10 8 14 14 H 1.48501 * 109.47004 * 209.99963 * 12 10 8 15 15 H 1.48496 * 109.47433 * 329.99771 * 12 10 8 16 16 C 1.53052 * 109.36363 * 300.68012 * 6 5 4 17 17 N 1.46955 * 109.36291 * 58.40577 * 16 6 5 18 18 C 1.39681 * 110.99932 * 176.80667 * 17 16 6 19 19 C 1.38914 * 120.06941 * 359.96279 * 18 17 16 20 20 C 1.38106 * 119.91874 * 179.79044 * 19 18 17 21 21 C 1.38285 * 120.07733 * 0.46335 * 20 19 18 22 22 C 1.38286 * 120.14612 * 359.78507 * 21 20 19 23 23 C 1.38102 * 120.07747 * 359.97438 * 22 21 20 24 24 H 1.08998 * 109.47277 * 185.80617 * 1 2 3 25 25 H 1.08998 * 109.47176 * 305.80440 * 1 2 3 26 26 H 1.09001 * 109.47267 * 65.80454 * 1 2 3 27 27 H 1.08997 * 109.48849 * 181.53357 * 4 2 1 28 28 H 1.09002 * 109.49167 * 301.57456 * 4 2 1 29 29 H 1.00897 * 110.99606 * 183.18810 * 5 4 2 30 30 H 0.96998 * 120.00369 * 179.97438 * 11 10 8 31 31 H 1.08997 * 109.49051 * 298.43428 * 16 6 5 32 32 H 1.09004 * 109.48055 * 178.36650 * 16 6 5 33 33 H 1.07998 * 120.04370 * 0.02562 * 19 18 17 34 34 H 1.08001 * 119.96318 * 180.23125 * 20 19 18 35 35 H 1.07999 * 119.92395 * 179.76918 * 21 20 19 36 36 H 1.08004 * 119.95617 * 180.02562 * 22 21 20 37 37 H 1.08003 * 120.03488 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0406 -0.7225 1.2489 5 7 1.5808 -2.1182 1.2266 6 6 2.0711 -2.8120 0.0274 7 1 3.1611 -2.8120 0.0275 8 6 1.5683 -4.2326 0.0278 9 1 0.9479 -4.5861 -0.7825 10 6 1.9004 -5.0813 1.0626 11 7 1.4621 -6.3212 1.0626 12 14 2.9730 -4.4697 2.4643 13 1 2.1134 -3.9033 3.5345 14 1 3.7644 -5.6008 3.0118 15 1 3.8939 -3.4191 1.9610 16 6 1.5604 -2.0895 -1.2214 17 7 2.0202 -0.6939 -1.1990 18 6 1.6334 -0.0208 -2.3602 19 6 0.9106 -0.6861 -3.3424 20 6 0.5260 -0.0163 -4.4873 21 6 0.8679 1.3123 -4.6609 22 6 1.5918 1.9761 -3.6874 23 6 1.9753 1.3138 -2.5379 24 1 -0.3634 -1.0224 0.1040 25 1 -0.3633 0.6012 0.8334 26 1 -0.3634 0.4212 -0.9374 27 1 3.1302 -0.6988 1.2627 28 1 1.6547 -0.2264 2.1394 29 1 1.8603 -2.6044 2.0654 30 1 1.6960 -6.9183 1.7904 31 1 0.4708 -2.1132 -1.2352 32 1 1.9468 -2.5854 -2.1119 33 1 0.6464 -1.7247 -3.2091 34 1 -0.0392 -0.5319 -5.2497 35 1 0.5690 1.8326 -5.5589 36 1 1.8568 3.0139 -3.8260 37 1 2.5410 1.8327 -1.7782 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000221058522.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:05:54 Heat of formation + Delta-G solvation = 30.073696 kcal Electronic energy + Delta-G solvation = -18352.693405 eV Core-core repulsion = 15708.317629 eV Total energy + Delta-G solvation = -2644.375775 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.57096 -39.07400 -36.06702 -34.51852 -33.18839 -31.70075 -30.58663 -28.97815 -26.81776 -25.99785 -24.04637 -22.50781 -22.04894 -19.74460 -19.15400 -18.57261 -17.42671 -16.50987 -16.34428 -16.24490 -15.68199 -15.42502 -14.93780 -14.84776 -14.58321 -14.37112 -14.18814 -13.89582 -13.29674 -12.97057 -12.81438 -12.68084 -12.41168 -12.18608 -12.04308 -11.91299 -11.77077 -11.47247 -11.24608 -10.85697 -10.58472 -9.79842 -9.24691 -8.69710 -8.36845 -6.43418 0.53076 0.54735 1.21330 1.27911 1.34815 2.22265 2.72412 2.89179 3.05052 3.54483 3.81475 3.96536 4.14208 4.15488 4.25417 4.31496 4.37660 4.42053 4.57801 4.63419 4.67193 4.71916 4.76777 4.82133 4.94768 4.98435 5.12292 5.19505 5.38507 5.44351 5.46013 5.58270 5.70359 5.95905 6.07415 6.17103 6.32504 6.37140 6.49055 6.67383 7.22395 8.79730 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.036527 B = 0.006813 C = 0.006161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 766.377049 B = 4108.703481 C = 4543.360571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.093 3.907 3 H 0.110 0.890 4 C 0.048 3.952 5 N -0.688 5.688 6 C 0.192 3.808 7 H -0.009 1.009 8 C -0.515 4.515 9 H 0.040 0.960 10 C 0.023 3.977 11 N -0.939 5.939 12 Si 0.939 3.061 13 H -0.251 1.251 14 H -0.288 1.288 15 H -0.261 1.261 16 C 0.090 3.910 17 N -0.500 5.500 18 C 0.106 3.894 19 C -0.194 4.194 20 C -0.100 4.100 21 C -0.154 4.154 22 C -0.094 4.094 23 C -0.152 4.152 24 H 0.049 0.951 25 H 0.078 0.922 26 H 0.049 0.951 27 H 0.027 0.973 28 H 0.100 0.900 29 H 0.318 0.682 30 H 0.269 0.731 31 H 0.042 0.958 32 H 0.063 0.937 33 H 0.109 0.891 34 H 0.135 0.865 35 H 0.146 0.854 36 H 0.151 0.849 37 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.301 18.650 -5.207 19.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.013 4.013 3 H 0.128 0.872 4 C -0.082 4.082 5 N -0.325 5.325 6 C 0.083 3.917 7 H 0.008 0.992 8 C -0.554 4.554 9 H 0.058 0.942 10 C -0.176 4.176 11 N -0.579 5.579 12 Si 0.765 3.235 13 H -0.176 1.176 14 H -0.215 1.215 15 H -0.186 1.186 16 C -0.037 4.037 17 N -0.214 5.214 18 C 0.008 3.992 19 C -0.215 4.215 20 C -0.119 4.119 21 C -0.172 4.172 22 C -0.113 4.113 23 C -0.172 4.172 24 H 0.068 0.932 25 H 0.097 0.903 26 H 0.068 0.932 27 H 0.045 0.955 28 H 0.118 0.882 29 H 0.140 0.860 30 H 0.078 0.922 31 H 0.060 0.940 32 H 0.081 0.919 33 H 0.127 0.873 34 H 0.153 0.847 35 H 0.164 0.836 36 H 0.169 0.831 37 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 0.231 18.596 -5.282 19.333 hybrid contribution 0.545 -1.032 0.837 1.436 sum 0.776 17.564 -4.445 18.134 Atomic orbital electron populations 1.22209 0.95748 1.02435 1.01863 1.21922 0.94339 0.97619 0.87417 0.87185 1.22229 0.97434 0.90015 0.98493 1.61177 1.64048 1.02485 1.04817 1.19386 0.92573 0.91641 0.88050 0.99158 1.21127 1.32005 0.94347 1.07885 0.94158 1.25786 0.96713 0.94661 1.00453 1.70012 1.46927 1.06861 1.34060 0.85952 0.79331 0.78160 0.80074 1.17605 1.21482 1.18621 1.21945 0.97863 0.86198 0.97743 1.59489 1.56676 1.03027 1.02230 1.19195 0.94363 0.93886 0.91753 1.21471 1.01800 1.00942 0.97302 1.21247 0.98755 0.95428 0.96423 1.21371 1.00816 0.94453 1.00591 1.21332 0.96633 1.00742 0.92557 1.20960 1.03406 0.92665 1.00164 0.93171 0.90313 0.93216 0.95465 0.88153 0.86014 0.92190 0.94028 0.91860 0.87300 0.84729 0.83611 0.83114 0.84943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.99 8.45 71.98 0.61 -4.38 16 2 C 0.09 2.86 2.76 44.92 0.12 2.99 16 3 H 0.11 2.76 6.83 -2.39 -0.02 2.74 16 4 C 0.05 1.62 6.15 86.31 0.53 2.15 16 5 N -0.69 -29.79 5.70 -495.00 -2.82 -32.61 16 6 C 0.19 9.28 2.06 44.17 0.09 9.37 16 7 H -0.01 -0.46 7.20 -2.39 -0.02 -0.48 16 8 C -0.51 -29.76 9.35 25.60 0.24 -29.52 16 9 H 0.04 2.56 7.99 -2.91 -0.02 2.54 16 10 C 0.02 1.33 5.47 84.66 0.46 1.80 16 11 N -0.94 -58.21 13.96 21.45 0.30 -57.91 16 12 Si 0.94 43.89 24.65 68.60 1.69 45.58 16 13 H -0.25 -10.84 6.96 99.48 0.69 -10.15 16 14 H -0.29 -13.32 7.11 99.48 0.71 -12.61 16 15 H -0.26 -11.76 6.54 99.48 0.65 -11.11 16 16 C 0.09 3.82 3.14 86.31 0.27 4.09 16 17 N -0.50 -17.78 4.72 -670.95 -3.17 -20.95 16 18 C 0.11 3.33 4.28 38.21 0.16 3.49 16 19 C -0.19 -6.09 8.82 22.40 0.20 -5.90 16 20 C -0.10 -2.50 10.04 22.25 0.22 -2.27 16 21 C -0.15 -3.17 10.04 22.29 0.22 -2.95 16 22 C -0.09 -1.93 10.04 22.25 0.22 -1.71 16 23 C -0.15 -3.84 9.19 22.40 0.21 -3.63 16 24 H 0.05 1.87 6.10 -2.39 -0.01 1.85 16 25 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 26 H 0.05 1.47 7.13 -2.39 -0.02 1.46 16 27 H 0.03 0.94 8.14 -2.39 -0.02 0.92 16 28 H 0.10 2.78 8.14 -2.39 -0.02 2.76 16 29 H 0.32 14.08 3.99 -89.70 -0.36 13.73 16 30 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 31 H 0.04 1.85 5.92 -2.39 -0.01 1.83 16 32 H 0.06 2.78 7.17 -2.38 -0.02 2.76 16 33 H 0.11 3.77 5.81 -2.91 -0.02 3.75 16 34 H 0.13 2.79 8.06 -2.91 -0.02 2.76 16 35 H 0.15 2.11 8.06 -2.91 -0.02 2.08 16 36 H 0.15 2.08 8.06 -2.91 -0.02 2.06 16 37 H 0.13 2.94 7.20 -2.91 -0.02 2.92 16 Total: -1.00 -66.00 281.68 0.20 -65.80 By element: Atomic # 1 Polarization: 25.93 SS G_CDS: 0.64 Total: 26.56 kcal Atomic # 6 Polarization: -30.04 SS G_CDS: 3.56 Total: -26.47 kcal Atomic # 7 Polarization: -105.78 SS G_CDS: -5.69 Total: -111.47 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 1.69 Total: 45.58 kcal Total: -66.00 0.20 -65.80 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000221058522.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.869 kcal (2) G-P(sol) polarization free energy of solvation -65.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.795 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds