Wall clock time and date at job start Mon Mar 30 2020 03:49:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50710 * 1 3 3 C 1.38123 * 120.03735 * 2 1 4 4 C 1.38263 * 120.06937 * 180.27401 * 3 2 1 5 5 C 1.38311 * 120.15421 * 359.74601 * 4 3 2 6 6 C 1.38086 * 120.07109 * 0.02562 * 5 4 3 7 7 C 1.38885 * 120.03366 * 179.79154 * 2 1 3 8 8 N 1.39681 * 120.07662 * 0.02562 * 7 2 1 9 9 C 1.46962 * 110.99611 * 291.87096 * 8 7 2 10 10 C 1.53056 * 109.35956 * 176.81254 * 9 8 7 11 11 N 1.46954 * 109.38285 * 58.38916 * 10 9 8 12 12 C 1.46959 * 110.88198 * 300.70954 * 11 10 9 13 13 C 1.46949 * 110.99947 * 168.07161 * 8 7 2 14 14 H 1.09008 * 109.48955 * 63.20072 * 13 8 7 15 15 C 1.50699 * 109.49024 * 303.15704 * 13 8 7 16 16 H 1.07996 * 119.99903 * 354.61681 * 15 13 8 17 17 C 1.37877 * 119.99986 * 174.62067 * 15 13 8 18 18 N 1.31510 * 120.00101 * 0.02562 * 17 15 13 19 19 Si 1.86803 * 119.99765 * 179.97438 * 17 15 13 20 20 H 1.48495 * 109.47464 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.46768 * 120.00041 * 19 17 15 22 22 H 1.48501 * 109.47306 * 239.99938 * 19 17 15 23 23 H 1.08998 * 109.47026 * 274.13357 * 1 2 3 24 24 H 1.09007 * 109.46415 * 34.12803 * 1 2 3 25 25 H 1.08996 * 109.47459 * 154.12831 * 1 2 3 26 26 H 1.07998 * 119.96693 * 0.02562 * 3 2 1 27 27 H 1.08007 * 119.92790 * 179.76809 * 4 3 2 28 28 H 1.07999 * 119.96427 * 180.02562 * 5 4 3 29 29 H 1.07995 * 120.03679 * 179.97438 * 6 5 4 30 30 H 1.08992 * 109.49359 * 56.84550 * 9 8 7 31 31 H 1.09005 * 109.50622 * 296.78809 * 9 8 7 32 32 H 1.09002 * 109.48627 * 178.36732 * 10 9 8 33 33 H 1.08997 * 109.48544 * 298.41113 * 10 9 8 34 34 H 1.00899 * 110.99834 * 64.55839 * 11 10 9 35 35 H 1.09000 * 109.47174 * 299.32673 * 12 11 10 36 36 H 1.08995 * 109.50907 * 179.27521 * 12 11 10 37 37 H 0.97010 * 119.99875 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1985 1.1957 0.0000 4 6 3.5811 1.1965 -0.0057 5 6 4.2766 0.0010 -0.0062 6 6 3.5915 -1.1980 -0.0014 7 6 2.2022 -1.2024 0.0044 8 7 1.5062 -2.4134 0.0082 9 6 0.8001 -2.6109 1.2819 10 6 -0.0120 -3.9065 1.2163 11 7 0.8891 -5.0332 0.9367 12 6 1.5955 -4.8355 -0.3367 13 6 2.4076 -3.5398 -0.2711 14 1 3.1511 -3.6160 0.5224 15 6 3.1010 -3.3137 -1.5898 16 1 2.8301 -2.4680 -2.2044 17 6 4.0812 -4.1867 -2.0118 18 7 4.4107 -5.2170 -1.2638 19 14 4.9403 -3.9069 -3.6468 20 1 4.3908 -2.6877 -4.2925 21 1 6.3968 -3.7310 -3.4169 22 1 4.7167 -5.0792 -4.5306 23 1 -0.3633 0.0741 1.0250 24 1 -0.3632 0.8508 -0.5766 25 1 -0.3634 -0.9246 -0.4484 26 1 1.6586 2.1311 0.0004 27 1 4.1194 2.1329 -0.0095 28 1 5.3565 0.0052 -0.0102 29 1 4.1351 -2.1312 -0.0022 30 1 0.1298 -1.7702 1.4603 31 1 1.5249 -2.6766 2.0935 32 1 -0.5135 -4.0700 2.1702 33 1 -0.7554 -3.8299 0.4230 34 1 1.5413 -5.1712 1.6941 35 1 0.8705 -4.7695 -1.1480 36 1 2.2658 -5.6761 -0.5155 37 1 5.1006 -5.8310 -1.5606 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000221059048.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:49:16 Heat of formation + Delta-G solvation = 39.035954 kcal Electronic energy + Delta-G solvation = -18667.147307 eV Core-core repulsion = 16023.160164 eV Total energy + Delta-G solvation = -2643.987143 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.78831 -37.33836 -33.65431 -33.33174 -31.94175 -29.74064 -28.72110 -26.56130 -25.59026 -23.58172 -22.34315 -21.26290 -20.22892 -19.28763 -16.83358 -16.11736 -15.21093 -15.10407 -14.55907 -14.10539 -13.96715 -13.70154 -13.45722 -13.24424 -12.87205 -12.42681 -12.18986 -11.95249 -11.66540 -11.36405 -11.05405 -11.02298 -10.72185 -10.56533 -10.53369 -10.36847 -10.20241 -9.82290 -9.38486 -8.81819 -8.47703 -8.03734 -7.58051 -6.95006 -6.17780 -4.17392 2.05055 2.14390 3.23632 3.32462 3.38757 4.29704 4.41432 4.73832 5.09908 5.19229 5.42395 5.53239 5.61286 5.71187 5.74689 5.79340 5.88769 6.00655 6.07759 6.08795 6.28814 6.41004 6.48416 6.56240 6.63276 6.70729 6.80244 6.97898 7.09058 7.24601 7.33296 7.45972 7.59158 7.68818 7.79008 7.96368 8.19661 8.21700 8.39211 8.87832 9.44249 10.90002 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.016966 B = 0.011684 C = 0.007739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1649.966944 B = 2395.818047 C = 3616.995518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.115 4.115 3 C -0.120 4.120 4 C -0.153 4.153 5 C -0.121 4.121 6 C -0.124 4.124 7 C 0.133 3.867 8 N -0.487 5.487 9 C 0.018 3.982 10 C 0.062 3.938 11 N -0.697 5.697 12 C 0.068 3.932 13 C 0.181 3.819 14 H 0.013 0.987 15 C -0.500 4.500 16 H 0.064 0.936 17 C 0.063 3.937 18 N -0.891 5.891 19 Si 0.895 3.105 20 H -0.272 1.272 21 H -0.284 1.284 22 H -0.283 1.283 23 H 0.055 0.945 24 H 0.053 0.947 25 H 0.076 0.924 26 H 0.110 0.890 27 H 0.107 0.893 28 H 0.110 0.890 29 H 0.149 0.851 30 H 0.074 0.926 31 H 0.027 0.973 32 H 0.066 0.934 33 H 0.074 0.926 34 H 0.330 0.670 35 H 0.058 0.942 36 H 0.101 0.899 37 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.585 7.069 4.739 9.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.118 4.118 3 C -0.139 4.139 4 C -0.172 4.172 5 C -0.140 4.140 6 C -0.145 4.145 7 C 0.035 3.965 8 N -0.203 5.203 9 C -0.109 4.109 10 C -0.069 4.069 11 N -0.324 5.324 12 C -0.061 4.061 13 C 0.075 3.925 14 H 0.031 0.969 15 C -0.539 4.539 16 H 0.083 0.917 17 C -0.139 4.139 18 N -0.529 5.529 19 Si 0.723 3.277 20 H -0.196 1.196 21 H -0.210 1.210 22 H -0.209 1.209 23 H 0.074 0.926 24 H 0.072 0.928 25 H 0.095 0.905 26 H 0.128 0.872 27 H 0.125 0.875 28 H 0.128 0.872 29 H 0.166 0.834 30 H 0.093 0.907 31 H 0.045 0.955 32 H 0.085 0.915 33 H 0.092 0.908 34 H 0.146 0.854 35 H 0.076 0.924 36 H 0.119 0.881 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -5.379 6.417 4.089 9.318 hybrid contribution 1.880 0.875 -0.242 2.088 sum -3.499 7.291 3.847 8.956 Atomic orbital electron populations 1.20684 0.91918 1.02701 1.00654 1.19538 0.95587 0.91977 1.04655 1.20658 0.94062 0.96511 1.02629 1.20859 0.94177 0.97382 1.04812 1.20977 0.99170 0.92587 1.01290 1.21936 0.94295 0.99331 0.98905 1.18740 0.91287 0.89932 0.96559 1.59336 1.30147 1.02279 1.28567 1.22933 0.97839 1.00237 0.89927 1.22038 0.95973 0.88041 1.00849 1.60931 1.24387 1.40533 1.06597 1.22288 0.95814 0.99382 0.88637 1.20117 0.88991 0.86215 0.97217 0.96927 1.21042 1.18562 1.10867 1.03390 0.91738 1.24887 0.96685 0.94968 0.97398 1.69895 1.31413 1.14228 1.37399 0.86458 0.79223 0.78341 0.83693 1.19621 1.20994 1.20868 0.92618 0.92766 0.90545 0.87243 0.87466 0.87189 0.83381 0.90729 0.95494 0.91545 0.90789 0.85422 0.92359 0.88078 0.92690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.57 8.28 36.01 0.30 -1.27 16 2 C -0.12 -2.11 5.76 -104.42 -0.60 -2.71 16 3 C -0.12 -2.01 9.71 -39.61 -0.38 -2.39 16 4 C -0.15 -2.58 10.04 -39.55 -0.40 -2.98 16 5 C -0.12 -2.28 10.04 -39.61 -0.40 -2.67 16 6 C -0.12 -2.68 7.83 -39.38 -0.31 -2.98 16 7 C 0.13 2.77 4.70 -83.78 -0.39 2.37 16 8 N -0.49 -10.24 3.76 -164.73 -0.62 -10.86 16 9 C 0.02 0.32 5.09 -3.76 -0.02 0.31 16 10 C 0.06 1.03 6.72 -3.77 -0.03 1.01 16 11 N -0.70 -13.41 6.91 -113.63 -0.79 -14.19 16 12 C 0.07 1.55 5.81 -3.76 -0.02 1.53 16 13 C 0.18 4.29 1.30 -68.81 -0.09 4.20 16 14 H 0.01 0.34 7.05 -51.92 -0.37 -0.02 16 15 C -0.50 -13.02 5.83 -34.44 -0.20 -13.22 16 16 H 0.06 1.79 7.31 -52.49 -0.38 1.40 16 17 C 0.06 1.65 5.33 -17.82 -0.09 1.55 16 18 N -0.89 -23.92 11.75 55.43 0.65 -23.27 16 19 Si 0.90 20.95 29.54 -169.99 -5.02 15.93 16 20 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 21 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 22 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 23 H 0.06 0.75 7.38 -51.93 -0.38 0.37 16 24 H 0.05 0.73 8.11 -51.92 -0.42 0.31 16 25 H 0.08 1.27 6.99 -51.93 -0.36 0.91 16 26 H 0.11 1.52 8.06 -52.49 -0.42 1.10 16 27 H 0.11 1.50 8.06 -52.48 -0.42 1.08 16 28 H 0.11 1.85 8.06 -52.49 -0.42 1.43 16 29 H 0.15 3.58 5.13 -52.49 -0.27 3.31 16 30 H 0.07 1.19 5.35 -51.93 -0.28 0.91 16 31 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 32 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 34 H 0.33 6.15 8.89 -39.29 -0.35 5.80 16 35 H 0.06 1.39 8.14 -51.93 -0.42 0.97 16 36 H 0.10 2.55 6.56 -51.93 -0.34 2.21 16 37 H 0.26 6.81 8.31 -40.82 -0.34 6.47 16 LS Contribution 287.56 15.07 4.33 4.33 Total: -1.00 -26.78 287.56 -9.33 -36.11 By element: Atomic # 1 Polarization: 14.47 SS G_CDS: -5.25 Total: 9.22 kcal Atomic # 6 Polarization: -14.62 SS G_CDS: -2.64 Total: -17.26 kcal Atomic # 7 Polarization: -47.57 SS G_CDS: -0.75 Total: -48.33 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -26.78 -9.33 -36.11 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000221059048.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.144 kcal (2) G-P(sol) polarization free energy of solvation -26.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.108 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds