Wall clock time and date at job start Mon Mar 30 2020 03:49:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50710 * 1 3 3 C 1.38123 * 120.03735 * 2 1 4 4 C 1.38263 * 120.06937 * 180.27401 * 3 2 1 5 5 C 1.38311 * 120.15421 * 359.74601 * 4 3 2 6 6 C 1.38086 * 120.07109 * 0.02562 * 5 4 3 7 7 C 1.38885 * 120.03366 * 179.79154 * 2 1 3 8 8 N 1.39681 * 120.07662 * 0.02562 * 7 2 1 9 9 C 1.46962 * 110.99611 * 291.87096 * 8 7 2 10 10 C 1.53056 * 109.35956 * 176.81254 * 9 8 7 11 11 N 1.46954 * 109.38285 * 58.38916 * 10 9 8 12 12 C 1.46959 * 110.88198 * 300.70954 * 11 10 9 13 13 C 1.46949 * 110.99947 * 168.07161 * 8 7 2 14 14 H 1.09008 * 109.48955 * 63.20072 * 13 8 7 15 15 C 1.50699 * 109.49024 * 303.15704 * 13 8 7 16 16 H 1.07996 * 119.99903 * 354.61681 * 15 13 8 17 17 C 1.37877 * 119.99986 * 174.62067 * 15 13 8 18 18 N 1.31510 * 120.00101 * 0.02562 * 17 15 13 19 19 Si 1.86803 * 119.99765 * 179.97438 * 17 15 13 20 20 H 1.48495 * 109.47464 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.46768 * 120.00041 * 19 17 15 22 22 H 1.48501 * 109.47306 * 239.99938 * 19 17 15 23 23 H 1.08998 * 109.47026 * 274.13357 * 1 2 3 24 24 H 1.09007 * 109.46415 * 34.12803 * 1 2 3 25 25 H 1.08996 * 109.47459 * 154.12831 * 1 2 3 26 26 H 1.07998 * 119.96693 * 0.02562 * 3 2 1 27 27 H 1.08007 * 119.92790 * 179.76809 * 4 3 2 28 28 H 1.07999 * 119.96427 * 180.02562 * 5 4 3 29 29 H 1.07995 * 120.03679 * 179.97438 * 6 5 4 30 30 H 1.08992 * 109.49359 * 56.84550 * 9 8 7 31 31 H 1.09005 * 109.50622 * 296.78809 * 9 8 7 32 32 H 1.09002 * 109.48627 * 178.36732 * 10 9 8 33 33 H 1.08997 * 109.48544 * 298.41113 * 10 9 8 34 34 H 1.00899 * 110.99834 * 64.55839 * 11 10 9 35 35 H 1.09000 * 109.47174 * 299.32673 * 12 11 10 36 36 H 1.08995 * 109.50907 * 179.27521 * 12 11 10 37 37 H 0.97010 * 119.99875 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1985 1.1957 0.0000 4 6 3.5811 1.1965 -0.0057 5 6 4.2766 0.0010 -0.0062 6 6 3.5915 -1.1980 -0.0014 7 6 2.2022 -1.2024 0.0044 8 7 1.5062 -2.4134 0.0082 9 6 0.8001 -2.6109 1.2819 10 6 -0.0120 -3.9065 1.2163 11 7 0.8891 -5.0332 0.9367 12 6 1.5955 -4.8355 -0.3367 13 6 2.4076 -3.5398 -0.2711 14 1 3.1511 -3.6160 0.5224 15 6 3.1010 -3.3137 -1.5898 16 1 2.8301 -2.4680 -2.2044 17 6 4.0812 -4.1867 -2.0118 18 7 4.4107 -5.2170 -1.2638 19 14 4.9403 -3.9069 -3.6468 20 1 4.3908 -2.6877 -4.2925 21 1 6.3968 -3.7310 -3.4169 22 1 4.7167 -5.0792 -4.5306 23 1 -0.3633 0.0741 1.0250 24 1 -0.3632 0.8508 -0.5766 25 1 -0.3634 -0.9246 -0.4484 26 1 1.6586 2.1311 0.0004 27 1 4.1194 2.1329 -0.0095 28 1 5.3565 0.0052 -0.0102 29 1 4.1351 -2.1312 -0.0022 30 1 0.1298 -1.7702 1.4603 31 1 1.5249 -2.6766 2.0935 32 1 -0.5135 -4.0700 2.1702 33 1 -0.7554 -3.8299 0.4230 34 1 1.5413 -5.1712 1.6941 35 1 0.8705 -4.7695 -1.1480 36 1 2.2658 -5.6761 -0.5155 37 1 5.1006 -5.8310 -1.5606 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000221059048.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:49:16 Heat of formation + Delta-G solvation = 22.014950 kcal Electronic energy + Delta-G solvation = -18667.885393 eV Core-core repulsion = 16023.160164 eV Total energy + Delta-G solvation = -2644.725229 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.33517 -38.85682 -35.32118 -35.06103 -33.44992 -31.43975 -30.21767 -28.05819 -27.27698 -25.24332 -24.01903 -22.74874 -21.66782 -20.95213 -18.65197 -17.86525 -16.84259 -16.62411 -16.25530 -15.64485 -15.53869 -15.28788 -15.01868 -14.69571 -14.48228 -13.83456 -13.71192 -13.59726 -12.99475 -12.91456 -12.80458 -12.65760 -12.38014 -12.31864 -12.12822 -12.03640 -11.83568 -11.51734 -11.24158 -10.70085 -10.18476 -9.47205 -9.22252 -8.52568 -8.20033 -6.24494 0.61668 0.69335 1.34097 1.37606 1.48356 2.36311 2.93587 3.10640 3.18055 3.57549 4.09949 4.18877 4.22456 4.29125 4.38440 4.46631 4.53413 4.59455 4.72730 4.77620 4.82727 4.90215 4.99459 5.05313 5.09280 5.16455 5.21281 5.44972 5.55034 5.60610 5.70270 5.80451 5.83334 5.93690 6.15131 6.25062 6.49143 6.54323 6.68867 6.86821 7.38807 8.86785 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.016966 B = 0.011684 C = 0.007739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1649.966944 B = 2395.818047 C = 3616.995518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C -0.121 4.121 3 C -0.114 4.114 4 C -0.146 4.146 5 C -0.132 4.132 6 C -0.155 4.155 7 C 0.104 3.896 8 N -0.491 5.491 9 C 0.019 3.981 10 C 0.064 3.936 11 N -0.693 5.693 12 C 0.083 3.917 13 C 0.195 3.805 14 H -0.022 1.022 15 C -0.500 4.500 16 H 0.043 0.957 17 C 0.023 3.977 18 N -0.913 5.913 19 Si 0.948 3.052 20 H -0.276 1.276 21 H -0.280 1.280 22 H -0.277 1.277 23 H 0.078 0.922 24 H 0.077 0.923 25 H 0.059 0.941 26 H 0.149 0.851 27 H 0.144 0.856 28 H 0.121 0.879 29 H 0.107 0.893 30 H 0.101 0.899 31 H 0.016 0.984 32 H 0.104 0.896 33 H 0.074 0.926 34 H 0.333 0.667 35 H 0.044 0.956 36 H 0.072 0.928 37 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.992 9.449 5.112 12.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.123 4.123 3 C -0.133 4.133 4 C -0.165 4.165 5 C -0.151 4.151 6 C -0.176 4.176 7 C 0.006 3.994 8 N -0.208 5.208 9 C -0.107 4.107 10 C -0.066 4.066 11 N -0.321 5.321 12 C -0.048 4.048 13 C 0.088 3.912 14 H -0.005 1.005 15 C -0.540 4.540 16 H 0.061 0.939 17 C -0.177 4.177 18 N -0.553 5.553 19 Si 0.775 3.225 20 H -0.201 1.201 21 H -0.206 1.206 22 H -0.202 1.202 23 H 0.097 0.903 24 H 0.096 0.904 25 H 0.078 0.922 26 H 0.167 0.833 27 H 0.161 0.839 28 H 0.139 0.861 29 H 0.125 0.875 30 H 0.119 0.881 31 H 0.035 0.965 32 H 0.123 0.877 33 H 0.092 0.908 34 H 0.150 0.850 35 H 0.063 0.937 36 H 0.090 0.910 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -6.796 8.807 4.474 11.991 hybrid contribution 2.307 0.252 -0.298 2.340 sum -4.489 9.059 4.176 10.939 Atomic orbital electron populations 1.20699 0.89618 1.02884 1.02328 1.19941 0.97384 0.91368 1.03618 1.21137 0.94203 0.97410 1.00520 1.21263 0.94689 0.97759 1.02794 1.21180 0.99977 0.92609 1.01340 1.21717 0.95011 0.98868 1.01984 1.18995 0.91265 0.90843 0.98251 1.59376 1.29407 1.01602 1.30382 1.23040 0.97692 1.01788 0.88230 1.22176 0.95143 0.86488 1.02796 1.60870 1.24060 1.41911 1.05219 1.21897 0.94902 0.97846 0.90108 1.19777 0.88718 0.87841 0.94912 1.00484 1.21052 1.18982 1.09909 1.04008 0.93892 1.25480 0.97324 0.94917 1.00001 1.69987 1.31899 1.14822 1.38580 0.85642 0.78339 0.77985 0.80582 1.20104 1.20571 1.20249 0.90339 0.90439 0.92205 0.83335 0.83861 0.86144 0.87463 0.88138 0.96519 0.87739 0.90794 0.85035 0.93698 0.90956 0.92692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.68 8.28 71.24 0.59 -2.09 16 2 C -0.12 -4.14 5.76 -19.73 -0.11 -4.25 16 3 C -0.11 -3.39 9.71 22.25 0.22 -3.17 16 4 C -0.15 -4.49 10.04 22.29 0.22 -4.27 16 5 C -0.13 -4.92 10.04 22.25 0.22 -4.70 16 6 C -0.16 -6.92 7.83 22.40 0.18 -6.75 16 7 C 0.10 4.35 4.70 38.21 0.18 4.53 16 8 N -0.49 -20.97 3.76 -675.07 -2.54 -23.50 16 9 C 0.02 0.68 5.09 86.31 0.44 1.11 16 10 C 0.06 2.04 6.72 86.31 0.58 2.62 16 11 N -0.69 -26.74 6.91 -513.42 -3.55 -30.29 16 12 C 0.08 3.91 5.81 86.31 0.50 4.42 16 13 C 0.20 9.70 1.30 44.18 0.06 9.75 16 14 H -0.02 -1.24 7.05 -2.38 -0.02 -1.26 16 15 C -0.50 -27.33 5.83 25.60 0.15 -27.18 16 16 H 0.04 2.49 7.31 -2.91 -0.02 2.46 16 17 C 0.02 1.23 5.33 84.66 0.45 1.68 16 18 N -0.91 -51.21 11.75 21.45 0.25 -50.96 16 19 Si 0.95 44.21 29.54 68.60 2.03 46.24 16 20 H -0.28 -12.96 7.11 99.48 0.71 -12.26 16 21 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 22 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 23 H 0.08 1.78 7.38 -2.39 -0.02 1.76 16 24 H 0.08 1.75 8.11 -2.38 -0.02 1.73 16 25 H 0.06 1.84 6.99 -2.39 -0.02 1.82 16 26 H 0.15 3.26 8.06 -2.91 -0.02 3.24 16 27 H 0.14 3.35 8.06 -2.91 -0.02 3.33 16 28 H 0.12 4.06 8.06 -2.91 -0.02 4.03 16 29 H 0.11 5.60 5.13 -2.91 -0.01 5.59 16 30 H 0.10 2.94 5.35 -2.39 -0.01 2.93 16 31 H 0.02 0.61 8.14 -2.38 -0.02 0.59 16 32 H 0.10 2.60 8.14 -2.39 -0.02 2.58 16 33 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 34 H 0.33 12.57 8.89 -89.69 -0.80 11.77 16 35 H 0.04 2.21 8.14 -2.39 -0.02 2.19 16 36 H 0.07 3.83 6.56 -2.39 -0.02 3.82 16 37 H 0.26 14.13 8.31 -92.70 -0.77 13.36 16 Total: -1.00 -60.83 287.56 0.13 -60.70 By element: Atomic # 1 Polarization: 25.85 SS G_CDS: 0.27 Total: 26.12 kcal Atomic # 6 Polarization: -31.97 SS G_CDS: 3.67 Total: -28.30 kcal Atomic # 7 Polarization: -98.92 SS G_CDS: -5.84 Total: -104.76 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 2.03 Total: 46.24 kcal Total: -60.83 0.13 -60.70 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000221059048.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.713 kcal (2) G-P(sol) polarization free energy of solvation -60.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.698 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds