Wall clock time and date at job start Mon Mar 30 2020 03:49:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38309 * 119.96452 * 2 1 4 4 C 1.38259 * 120.14971 * 180.02562 * 3 2 1 5 5 C 1.38134 * 120.07447 * 359.74318 * 4 3 2 6 6 C 1.38883 * 119.92298 * 0.53393 * 5 4 3 7 7 N 1.39675 * 120.07237 * 179.74582 * 6 5 4 8 8 C 1.46956 * 111.00072 * 123.67546 * 7 6 5 9 9 C 1.53047 * 109.36680 * 183.18780 * 8 7 6 10 10 N 1.46953 * 109.36497 * 301.59896 * 9 8 7 11 11 C 1.46956 * 110.88107 * 59.32178 * 10 9 8 12 12 C 1.46953 * 111.00089 * 247.47448 * 7 6 5 13 13 H 1.09001 * 109.49100 * 296.78244 * 12 7 6 14 14 C 1.50704 * 109.48838 * 56.84695 * 12 7 6 15 15 H 1.07999 * 119.99796 * 359.88370 * 14 12 7 16 16 C 1.37873 * 120.00193 * 179.89511 * 14 12 7 17 17 N 1.31522 * 119.99894 * 359.97438 * 16 14 12 18 18 Si 1.86795 * 120.00274 * 180.02562 * 16 14 12 19 19 H 1.48496 * 109.47669 * 89.99612 * 18 16 14 20 20 H 1.48504 * 109.47242 * 209.99857 * 18 16 14 21 21 H 1.48500 * 109.47016 * 329.99326 * 18 16 14 22 22 C 1.38089 * 119.96200 * 180.02562 * 2 1 3 23 23 H 1.09000 * 109.46858 * 269.97644 * 1 2 3 24 24 H 1.08998 * 109.46799 * 29.97858 * 1 2 3 25 25 H 1.09004 * 109.46880 * 149.97665 * 1 2 3 26 26 H 1.08001 * 119.92329 * 0.02562 * 3 2 1 27 27 H 1.07997 * 119.96250 * 180.02562 * 4 3 2 28 28 H 1.08005 * 120.03513 * 180.27931 * 5 4 3 29 29 H 1.09007 * 109.48628 * 63.21859 * 8 7 6 30 30 H 1.09006 * 109.49098 * 303.15936 * 8 7 6 31 31 H 1.09002 * 109.49280 * 181.63307 * 9 8 7 32 32 H 1.09001 * 109.50536 * 61.57959 * 9 8 7 33 33 H 1.00899 * 111.00150 * 183.18465 * 10 9 8 34 34 H 1.09002 * 109.48908 * 60.64267 * 11 10 9 35 35 H 1.09002 * 109.49369 * 180.71395 * 11 10 9 36 36 H 0.97001 * 119.99802 * 179.97438 * 17 16 14 37 37 H 1.07999 * 120.03382 * 359.97219 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1982 0.0000 4 6 3.5804 1.2027 -0.0005 5 6 4.2765 0.0096 0.0043 6 6 3.5859 -1.1954 -0.0015 7 7 4.2867 -2.4037 -0.0021 8 6 3.8885 -3.2439 1.1359 9 6 4.7333 -4.5201 1.1447 10 7 4.5477 -5.2360 -0.1252 11 6 4.9460 -4.3958 -1.2632 12 6 4.1011 -3.1196 -1.2719 13 1 3.0496 -3.3803 -1.3921 14 6 4.5346 -2.2375 -2.4144 15 1 4.9086 -1.2437 -2.2174 16 6 4.4534 -2.6991 -3.7110 17 7 3.9982 -3.9095 -3.9508 18 14 4.9914 -1.6061 -5.1270 19 1 6.4339 -1.8262 -5.4021 20 1 4.1999 -1.9399 -6.3384 21 1 4.7678 -0.1830 -4.7664 22 6 2.1967 -1.1963 -0.0005 23 1 -0.3633 -0.0004 1.0277 24 1 -0.3633 0.8902 -0.5135 25 1 -0.3633 -0.8898 -0.5142 26 1 1.6560 2.1325 0.0004 27 1 4.1167 2.1401 -0.0001 28 1 5.3565 0.0138 0.0084 29 1 2.8345 -3.5061 1.0431 30 1 4.0469 -2.6965 2.0652 31 1 4.4198 -5.1581 1.9710 32 1 5.7848 -4.2596 1.2650 33 1 5.0539 -6.1088 -0.1256 34 1 5.9999 -4.1336 -1.1704 35 1 4.7875 -4.9431 -2.1924 36 1 3.9407 -4.2341 -4.8631 37 1 1.6566 -2.1316 -0.0005 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000221059123.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:49:18 Heat of formation + Delta-G solvation = 36.315679 kcal Electronic energy + Delta-G solvation = -18354.611398 eV Core-core repulsion = 15710.506296 eV Total energy + Delta-G solvation = -2644.105103 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.46604 -37.37458 -33.82214 -32.98060 -31.93965 -29.60924 -28.90227 -26.47246 -25.58045 -24.02217 -21.88157 -21.61985 -20.15079 -18.66252 -16.85718 -16.00479 -15.46022 -14.74628 -14.66913 -14.55609 -13.82489 -13.66114 -13.36288 -13.20437 -12.87629 -12.60661 -12.28372 -12.01655 -11.83026 -11.32976 -11.11285 -10.97749 -10.77157 -10.67786 -10.58622 -10.20533 -10.15796 -9.76718 -9.02177 -8.51281 -8.14695 -7.84260 -7.68016 -7.33328 -6.05035 -4.08974 2.00765 2.00974 3.29897 3.36311 3.41315 4.36252 4.38784 4.81069 5.05017 5.30683 5.31974 5.37684 5.65349 5.69698 5.72258 5.85736 5.87878 5.91810 6.05050 6.13305 6.17622 6.24657 6.43293 6.48061 6.68650 6.76770 6.83627 6.99566 7.10011 7.23550 7.24251 7.50903 7.64083 7.77559 7.84857 8.15480 8.17088 8.35811 8.57003 8.98765 9.55967 11.01816 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.015333 B = 0.010969 C = 0.007633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1825.716678 B = 2552.112889 C = 3667.222245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.085 4.085 3 C -0.143 4.143 4 C -0.117 4.117 5 C -0.105 4.105 6 C 0.149 3.851 7 N -0.512 5.512 8 C 0.062 3.938 9 C 0.063 3.937 10 N -0.697 5.697 11 C 0.065 3.935 12 C 0.230 3.770 13 H 0.013 0.987 14 C -0.505 4.505 15 H 0.066 0.934 16 C 0.062 3.938 17 N -0.891 5.891 18 Si 0.896 3.104 19 H -0.280 1.280 20 H -0.287 1.287 21 H -0.273 1.273 22 C -0.146 4.146 23 H 0.062 0.938 24 H 0.061 0.939 25 H 0.063 0.937 26 H 0.111 0.889 27 H 0.114 0.886 28 H 0.120 0.880 29 H 0.035 0.965 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.029 0.971 33 H 0.326 0.674 34 H 0.014 0.986 35 H 0.109 0.891 36 H 0.262 0.738 37 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.255 4.238 8.575 9.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.085 4.085 3 C -0.161 4.161 4 C -0.135 4.135 5 C -0.124 4.124 6 C 0.054 3.946 7 N -0.234 5.234 8 C -0.065 4.065 9 C -0.067 4.067 10 N -0.328 5.328 11 C -0.063 4.063 12 C 0.126 3.874 13 H 0.030 0.970 14 C -0.544 4.544 15 H 0.084 0.916 16 C -0.140 4.140 17 N -0.530 5.530 18 Si 0.723 3.277 19 H -0.207 1.207 20 H -0.212 1.212 21 H -0.198 1.198 22 C -0.166 4.166 23 H 0.081 0.919 24 H 0.080 0.920 25 H 0.082 0.918 26 H 0.129 0.871 27 H 0.132 0.868 28 H 0.138 0.862 29 H 0.053 0.947 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.047 0.953 33 H 0.142 0.858 34 H 0.032 0.968 35 H 0.127 0.873 36 H 0.072 0.928 37 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -2.451 4.349 8.401 9.772 hybrid contribution 0.483 0.265 -0.941 1.091 sum -1.967 4.614 7.460 8.990 Atomic orbital electron populations 1.20736 0.92044 1.02364 1.01479 1.19671 0.95388 0.93137 1.00333 1.20789 0.94234 0.96768 1.04315 1.20924 0.94097 0.97469 1.01050 1.20976 0.99869 0.91039 1.00520 1.18676 0.89794 0.91629 0.94463 1.60039 1.55219 1.02996 1.05193 1.22081 0.97494 0.93200 0.93755 1.21871 0.97700 0.94427 0.92694 1.60729 1.62086 1.06977 1.02980 1.22352 0.96068 0.95003 0.92905 1.19328 0.94975 0.89651 0.83448 0.96961 1.21133 1.42622 1.00680 0.89935 0.91632 1.24915 0.95080 0.95205 0.98758 1.69876 1.46279 1.16454 1.20404 0.86521 0.78508 0.81015 0.81617 1.20653 1.21237 1.19796 1.21500 0.95090 0.97386 1.02655 0.91882 0.92043 0.91824 0.87125 0.86762 0.86155 0.94705 0.91916 0.91829 0.95320 0.85780 0.96789 0.87275 0.92844 0.86905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.51 10.01 36.01 0.36 -1.15 16 2 C -0.08 -1.47 5.88 -104.65 -0.62 -2.08 16 3 C -0.14 -2.33 9.70 -39.55 -0.38 -2.72 16 4 C -0.12 -1.97 10.04 -39.61 -0.40 -2.37 16 5 C -0.11 -2.04 9.13 -39.38 -0.36 -2.40 16 6 C 0.15 3.14 3.68 -83.79 -0.31 2.83 16 7 N -0.51 -11.36 4.50 -164.73 -0.74 -12.11 16 8 C 0.06 1.19 5.26 -3.77 -0.02 1.17 16 9 C 0.06 1.13 6.72 -3.77 -0.03 1.11 16 10 N -0.70 -14.08 6.90 -113.64 -0.78 -14.87 16 11 C 0.07 1.58 5.75 -3.76 -0.02 1.55 16 12 C 0.23 5.87 1.75 -68.80 -0.12 5.75 16 13 H 0.01 0.37 7.68 -51.93 -0.40 -0.03 16 14 C -0.50 -13.89 8.06 -34.44 -0.28 -14.17 16 15 H 0.07 1.83 6.60 -52.49 -0.35 1.49 16 16 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 17 N -0.89 -25.20 11.34 55.43 0.63 -24.57 16 18 Si 0.90 21.55 29.54 -169.99 -5.02 16.53 16 19 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 20 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 21 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 22 C -0.15 -2.92 8.33 -39.38 -0.33 -3.25 16 23 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 24 H 0.06 0.75 8.08 -51.93 -0.42 0.33 16 25 H 0.06 0.89 8.08 -51.93 -0.42 0.47 16 26 H 0.11 1.49 8.06 -52.49 -0.42 1.07 16 27 H 0.11 1.60 8.06 -52.49 -0.42 1.17 16 28 H 0.12 2.28 8.06 -52.48 -0.42 1.86 16 29 H 0.03 0.69 7.05 -51.93 -0.37 0.32 16 30 H 0.06 1.07 8.13 -51.93 -0.42 0.65 16 31 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 32 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 33 H 0.33 5.74 8.90 -39.29 -0.35 5.39 16 34 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.11 2.90 6.12 -51.93 -0.32 2.58 16 36 H 0.26 7.07 8.31 -40.82 -0.34 6.74 16 37 H 0.11 2.30 7.06 -52.49 -0.37 1.92 16 LS Contribution 295.96 15.07 4.46 4.46 Total: -1.00 -29.15 295.96 -9.55 -38.70 By element: Atomic # 1 Polarization: 11.46 SS G_CDS: -5.51 Total: 5.95 kcal Atomic # 6 Polarization: -11.52 SS G_CDS: -2.59 Total: -14.11 kcal Atomic # 7 Polarization: -50.64 SS G_CDS: -0.90 Total: -51.54 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -29.15 -9.55 -38.70 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000221059123.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.017 kcal (2) G-P(sol) polarization free energy of solvation -29.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.701 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds