Wall clock time and date at job start Mon Mar 30 2020 03:49:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38309 * 119.96452 * 2 1 4 4 C 1.38259 * 120.14971 * 180.02562 * 3 2 1 5 5 C 1.38134 * 120.07447 * 359.74318 * 4 3 2 6 6 C 1.38883 * 119.92298 * 0.53393 * 5 4 3 7 7 N 1.39675 * 120.07237 * 179.74582 * 6 5 4 8 8 C 1.46956 * 111.00072 * 123.67546 * 7 6 5 9 9 C 1.53047 * 109.36680 * 183.18780 * 8 7 6 10 10 N 1.46953 * 109.36497 * 301.59896 * 9 8 7 11 11 C 1.46956 * 110.88107 * 59.32178 * 10 9 8 12 12 C 1.46953 * 111.00089 * 247.47448 * 7 6 5 13 13 H 1.09001 * 109.49100 * 296.78244 * 12 7 6 14 14 C 1.50704 * 109.48838 * 56.84695 * 12 7 6 15 15 H 1.07999 * 119.99796 * 359.88370 * 14 12 7 16 16 C 1.37873 * 120.00193 * 179.89511 * 14 12 7 17 17 N 1.31522 * 119.99894 * 359.97438 * 16 14 12 18 18 Si 1.86795 * 120.00274 * 180.02562 * 16 14 12 19 19 H 1.48496 * 109.47669 * 89.99612 * 18 16 14 20 20 H 1.48504 * 109.47242 * 209.99857 * 18 16 14 21 21 H 1.48500 * 109.47016 * 329.99326 * 18 16 14 22 22 C 1.38089 * 119.96200 * 180.02562 * 2 1 3 23 23 H 1.09000 * 109.46858 * 269.97644 * 1 2 3 24 24 H 1.08998 * 109.46799 * 29.97858 * 1 2 3 25 25 H 1.09004 * 109.46880 * 149.97665 * 1 2 3 26 26 H 1.08001 * 119.92329 * 0.02562 * 3 2 1 27 27 H 1.07997 * 119.96250 * 180.02562 * 4 3 2 28 28 H 1.08005 * 120.03513 * 180.27931 * 5 4 3 29 29 H 1.09007 * 109.48628 * 63.21859 * 8 7 6 30 30 H 1.09006 * 109.49098 * 303.15936 * 8 7 6 31 31 H 1.09002 * 109.49280 * 181.63307 * 9 8 7 32 32 H 1.09001 * 109.50536 * 61.57959 * 9 8 7 33 33 H 1.00899 * 111.00150 * 183.18465 * 10 9 8 34 34 H 1.09002 * 109.48908 * 60.64267 * 11 10 9 35 35 H 1.09002 * 109.49369 * 180.71395 * 11 10 9 36 36 H 0.97001 * 119.99802 * 179.97438 * 17 16 14 37 37 H 1.07999 * 120.03382 * 359.97219 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1982 0.0000 4 6 3.5804 1.2027 -0.0005 5 6 4.2765 0.0096 0.0043 6 6 3.5859 -1.1954 -0.0015 7 7 4.2867 -2.4037 -0.0021 8 6 3.8885 -3.2439 1.1359 9 6 4.7333 -4.5201 1.1447 10 7 4.5477 -5.2360 -0.1252 11 6 4.9460 -4.3958 -1.2632 12 6 4.1011 -3.1196 -1.2719 13 1 3.0496 -3.3803 -1.3921 14 6 4.5346 -2.2375 -2.4144 15 1 4.9086 -1.2437 -2.2174 16 6 4.4534 -2.6991 -3.7110 17 7 3.9982 -3.9095 -3.9508 18 14 4.9914 -1.6061 -5.1270 19 1 6.4339 -1.8262 -5.4021 20 1 4.1999 -1.9399 -6.3384 21 1 4.7678 -0.1830 -4.7664 22 6 2.1967 -1.1963 -0.0005 23 1 -0.3633 -0.0004 1.0277 24 1 -0.3633 0.8902 -0.5135 25 1 -0.3633 -0.8898 -0.5142 26 1 1.6560 2.1325 0.0004 27 1 4.1167 2.1401 -0.0001 28 1 5.3565 0.0138 0.0084 29 1 2.8345 -3.5061 1.0431 30 1 4.0469 -2.6965 2.0652 31 1 4.4198 -5.1581 1.9710 32 1 5.7848 -4.2596 1.2650 33 1 5.0539 -6.1088 -0.1256 34 1 5.9999 -4.1336 -1.1704 35 1 4.7875 -4.9431 -2.1924 36 1 3.9407 -4.2341 -4.8631 37 1 1.6566 -2.1316 -0.0005 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000221059123.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:49:18 Heat of formation + Delta-G solvation = 16.970281 kcal Electronic energy + Delta-G solvation = -18355.450278 eV Core-core repulsion = 15710.506296 eV Total energy + Delta-G solvation = -2644.943982 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.02211 -38.92914 -35.41131 -35.00450 -33.27684 -31.45147 -30.42689 -27.75084 -27.46349 -25.77467 -23.66709 -23.07844 -21.59418 -20.40141 -18.72187 -17.65468 -17.17822 -16.49571 -16.19219 -16.09420 -15.59902 -15.30219 -14.95078 -14.50994 -14.43567 -14.16835 -13.85402 -13.72422 -13.05845 -12.88599 -12.74732 -12.63673 -12.51517 -12.35177 -12.15510 -12.03630 -11.88808 -11.52601 -10.98767 -10.59759 -9.57978 -9.39798 -9.25755 -9.08372 -8.15012 -6.26247 0.57282 0.59176 1.38695 1.39115 1.49924 2.39030 2.92753 3.12006 3.20745 3.52896 4.02217 4.10339 4.18454 4.30149 4.37434 4.43941 4.51891 4.62735 4.67993 4.75084 4.83201 4.86182 4.93005 4.97795 5.02490 5.05878 5.33485 5.36228 5.52592 5.62092 5.66853 5.74046 5.86580 6.01713 6.15885 6.19375 6.50433 6.61443 6.77844 6.93156 7.42234 8.90997 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.015333 B = 0.010969 C = 0.007633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1825.716678 B = 2552.112889 C = 3667.222245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.089 4.089 3 C -0.139 4.139 4 C -0.111 4.111 5 C -0.125 4.125 6 C 0.117 3.883 7 N -0.516 5.516 8 C 0.060 3.940 9 C 0.065 3.935 10 N -0.702 5.702 11 C 0.080 3.920 12 C 0.242 3.758 13 H -0.034 1.034 14 C -0.519 4.519 15 H 0.057 0.943 16 C 0.017 3.983 17 N -0.916 5.916 18 Si 0.956 3.044 19 H -0.273 1.273 20 H -0.282 1.282 21 H -0.272 1.272 22 C -0.168 4.168 23 H 0.084 0.916 24 H 0.083 0.917 25 H 0.053 0.947 26 H 0.150 0.850 27 H 0.149 0.851 28 H 0.117 0.883 29 H 0.022 0.978 30 H 0.085 0.915 31 H 0.102 0.898 32 H 0.032 0.968 33 H 0.343 0.657 34 H 0.002 0.998 35 H 0.081 0.919 36 H 0.263 0.737 37 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.493 6.103 9.358 11.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.089 4.089 3 C -0.156 4.156 4 C -0.129 4.129 5 C -0.144 4.144 6 C 0.023 3.977 7 N -0.239 5.239 8 C -0.067 4.067 9 C -0.064 4.064 10 N -0.333 5.333 11 C -0.050 4.050 12 C 0.136 3.864 13 H -0.017 1.017 14 C -0.557 4.557 15 H 0.075 0.925 16 C -0.183 4.183 17 N -0.555 5.555 18 Si 0.781 3.219 19 H -0.198 1.198 20 H -0.207 1.207 21 H -0.197 1.197 22 C -0.189 4.189 23 H 0.103 0.897 24 H 0.102 0.898 25 H 0.072 0.928 26 H 0.167 0.833 27 H 0.166 0.834 28 H 0.135 0.865 29 H 0.041 0.959 30 H 0.104 0.896 31 H 0.120 0.880 32 H 0.050 0.950 33 H 0.161 0.839 34 H 0.020 0.980 35 H 0.099 0.901 36 H 0.072 0.928 37 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -2.686 6.208 9.211 11.428 hybrid contribution 0.497 -0.275 -1.106 1.243 sum -2.189 5.933 8.105 10.280 Atomic orbital electron populations 1.20789 0.89513 1.02987 1.03072 1.20117 0.97394 0.92574 0.98839 1.21251 0.94226 0.97780 1.02381 1.21331 0.94710 0.97757 0.99140 1.21108 0.99948 0.91589 1.01742 1.18904 0.90486 0.91677 0.96587 1.59997 1.55821 1.03589 1.04458 1.22209 0.97035 0.93834 0.93656 1.21990 0.97733 0.94318 0.92387 1.60607 1.62381 1.07390 1.02946 1.21945 0.94917 0.94747 0.93396 1.18980 0.92137 0.90291 0.84956 1.01667 1.21338 1.42661 1.00642 0.91102 0.92512 1.25658 0.95139 0.96427 1.01030 1.70006 1.46971 1.17732 1.20839 0.85583 0.78411 0.79208 0.78674 1.19805 1.20736 1.19655 1.21484 0.94885 0.97929 1.04560 0.89709 0.89794 0.92808 0.83265 0.83367 0.86534 0.95938 0.89643 0.88029 0.94997 0.83911 0.98011 0.90094 0.92792 0.88829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.72 10.01 71.24 0.71 -2.01 16 2 C -0.09 -2.95 5.88 -19.88 -0.12 -3.07 16 3 C -0.14 -4.10 9.70 22.29 0.22 -3.88 16 4 C -0.11 -3.48 10.04 22.25 0.22 -3.26 16 5 C -0.12 -4.82 9.13 22.40 0.20 -4.61 16 6 C 0.12 5.06 3.68 38.21 0.14 5.20 16 7 N -0.52 -23.55 4.50 -675.08 -3.04 -26.59 16 8 C 0.06 2.31 5.26 86.31 0.45 2.76 16 9 C 0.07 2.27 6.72 86.31 0.58 2.85 16 10 N -0.70 -28.51 6.90 -513.43 -3.54 -32.06 16 11 C 0.08 3.98 5.75 86.31 0.50 4.48 16 12 C 0.24 12.85 1.75 44.18 0.08 12.93 16 13 H -0.03 -2.09 7.68 -2.39 -0.02 -2.11 16 14 C -0.52 -29.44 8.06 25.60 0.21 -29.23 16 15 H 0.06 3.25 6.60 -2.91 -0.02 3.23 16 16 C 0.02 0.94 5.30 84.65 0.45 1.39 16 17 N -0.92 -53.37 11.34 21.45 0.24 -53.12 16 18 Si 0.96 44.65 29.54 68.60 2.03 46.68 16 19 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 20 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 21 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 22 C -0.17 -6.87 8.33 22.40 0.19 -6.68 16 23 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 24 H 0.08 1.76 8.08 -2.39 -0.02 1.74 16 25 H 0.05 1.46 8.08 -2.38 -0.02 1.45 16 26 H 0.15 3.26 8.06 -2.91 -0.02 3.24 16 27 H 0.15 3.57 8.06 -2.91 -0.02 3.55 16 28 H 0.12 4.45 8.06 -2.91 -0.02 4.43 16 29 H 0.02 0.91 7.05 -2.38 -0.02 0.90 16 30 H 0.09 2.87 8.13 -2.38 -0.02 2.85 16 31 H 0.10 2.79 8.14 -2.39 -0.02 2.77 16 32 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.34 11.91 8.90 -89.69 -0.80 11.11 16 34 H 0.00 0.08 8.14 -2.39 -0.02 0.06 16 35 H 0.08 4.49 6.12 -2.39 -0.01 4.48 16 36 H 0.26 14.54 8.31 -92.71 -0.77 13.77 16 37 H 0.09 4.05 7.06 -2.91 -0.02 4.03 16 Total: -1.00 -65.24 295.96 -0.23 -65.46 By element: Atomic # 1 Polarization: 22.51 SS G_CDS: 0.26 Total: 22.77 kcal Atomic # 6 Polarization: -26.98 SS G_CDS: 3.83 Total: -23.15 kcal Atomic # 7 Polarization: -105.43 SS G_CDS: -6.34 Total: -111.77 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 2.03 Total: 46.68 kcal Total: -65.24 -0.23 -65.46 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000221059123.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.433 kcal (2) G-P(sol) polarization free energy of solvation -65.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.463 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds