Wall clock time and date at job start Mon Mar 30 2020 03:49:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38287 * 119.92508 * 2 1 4 4 C 1.38106 * 120.06958 * 179.97438 * 3 2 1 5 5 C 1.38913 * 119.92829 * 0.02562 * 4 3 2 6 6 N 1.39671 * 120.07346 * 179.97438 * 5 4 3 7 7 C 1.46959 * 111.00274 * 290.96641 * 6 5 4 8 8 C 1.53048 * 109.36412 * 183.18843 * 7 6 5 9 9 N 1.46947 * 109.36586 * 301.59518 * 8 7 6 10 10 C 1.46957 * 110.88066 * 59.32343 * 9 8 7 11 11 C 1.46961 * 110.99903 * 54.76414 * 6 5 4 12 12 H 1.08999 * 109.50770 * 296.78655 * 11 6 5 13 13 C 1.50695 * 109.48974 * 56.84414 * 11 6 5 14 14 H 1.08000 * 120.00055 * 25.46337 * 13 11 6 15 15 C 1.37878 * 120.00053 * 205.46004 * 13 11 6 16 16 N 1.31510 * 119.99930 * 353.40823 * 15 13 11 17 17 Si 1.86800 * 119.99839 * 173.40988 * 15 13 11 18 18 H 1.48496 * 109.47258 * 60.00056 * 17 15 13 19 19 H 1.48502 * 109.46961 * 180.02562 * 17 15 13 20 20 H 1.48499 * 109.47260 * 299.99753 * 17 15 13 21 21 C 1.38908 * 119.84846 * 0.25420 * 5 4 3 22 22 C 1.38104 * 119.92706 * 359.48771 * 21 5 4 23 23 H 1.09003 * 109.47258 * 89.99520 * 1 2 3 24 24 H 1.08998 * 109.47075 * 210.00205 * 1 2 3 25 25 H 1.09008 * 109.46756 * 329.99837 * 1 2 3 26 26 H 1.07992 * 119.96260 * 359.95657 * 3 2 1 27 27 H 1.07999 * 120.03111 * 180.02562 * 4 3 2 28 28 H 1.08995 * 109.48950 * 63.21700 * 7 6 5 29 29 H 1.09002 * 109.48494 * 303.15773 * 7 6 5 30 30 H 1.09006 * 109.48416 * 181.62498 * 8 7 6 31 31 H 1.09002 * 109.48632 * 61.56747 * 8 7 6 32 32 H 1.00897 * 111.00442 * 295.45073 * 9 8 7 33 33 H 1.09002 * 109.48863 * 180.70941 * 10 9 8 34 34 H 1.08997 * 109.48896 * 60.64307 * 10 9 8 35 35 H 0.97001 * 120.00322 * 2.19889 * 16 15 13 36 36 H 1.08000 * 120.03359 * 179.73198 * 21 5 4 37 37 H 1.07995 * 119.96737 * 180.25374 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1969 1.1985 0.0000 4 6 3.5779 1.2020 0.0005 5 6 4.2740 -0.0001 0.0005 6 7 5.6707 -0.0002 0.0005 7 6 6.1975 0.4907 -1.2806 8 6 7.7252 0.4004 -1.2692 9 7 8.2519 1.1919 -0.1487 10 6 7.7252 0.7010 1.1325 11 6 6.1974 0.7914 1.1212 12 1 5.8956 1.8323 1.0051 13 6 5.6522 0.2514 2.4181 14 1 5.3420 -0.7809 2.4854 15 6 5.5495 1.0753 3.5189 16 7 6.0453 2.2926 3.4777 17 14 4.7061 0.4622 5.0689 18 1 5.4213 -0.7340 5.5815 19 1 4.7265 1.5312 6.0994 20 1 3.2994 0.1023 4.7576 21 6 3.5778 -1.2022 -0.0053 22 6 2.1968 -1.1986 -0.0005 23 1 -0.3634 0.0001 -1.0277 24 1 -0.3633 -0.8900 0.5139 25 1 -0.3633 0.8901 0.5139 26 1 1.6551 2.1327 -0.0007 27 1 4.1161 2.1384 0.0010 28 1 5.8956 1.5281 -1.4243 29 1 5.8031 -0.1190 -2.0935 30 1 8.1196 0.7909 -2.2074 31 1 8.0270 -0.6406 -1.1528 32 1 8.0484 2.1724 -0.2714 33 1 8.1196 1.3108 1.9453 34 1 8.0270 -0.3364 1.2762 35 1 6.4549 2.6222 2.6625 36 1 4.1160 -2.1385 -0.0097 37 1 1.6549 -2.1327 -0.0009 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000221059257.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:49:21 Heat of formation + Delta-G solvation = 29.522484 kcal Electronic energy + Delta-G solvation = -18380.779759 eV Core-core repulsion = 15736.380082 eV Total energy + Delta-G solvation = -2644.399678 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.63106 -37.68842 -34.06518 -33.25868 -30.79758 -30.33675 -29.65285 -26.39851 -24.82421 -23.48789 -22.29807 -21.92722 -20.60305 -19.48176 -17.23617 -16.18519 -15.17576 -14.83623 -14.60842 -14.30357 -13.91293 -13.74636 -13.56219 -13.39864 -13.24455 -12.86811 -12.31736 -11.89860 -11.64666 -11.50089 -11.23011 -11.04858 -10.83511 -10.65184 -10.60520 -10.58718 -10.16218 -10.08376 -8.87248 -8.57686 -8.35152 -7.88562 -7.71413 -7.45660 -6.43619 -4.12887 1.91395 1.99554 3.41706 3.44502 3.62066 4.30190 4.44279 4.59269 4.97787 5.27493 5.28902 5.31038 5.52911 5.54199 5.65433 5.70394 5.78177 5.79296 5.95485 5.99280 6.04691 6.20062 6.28549 6.36798 6.43840 6.57076 6.61765 6.70828 6.86303 7.07872 7.12049 7.29744 7.39769 7.53706 7.72573 7.96997 8.06259 8.35170 8.51716 8.79412 9.56751 10.94218 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.015070 B = 0.011585 C = 0.007395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1857.583780 B = 2416.290083 C = 3785.529438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.112 4.112 3 C -0.112 4.112 4 C -0.135 4.135 5 C 0.144 3.856 6 N -0.502 5.502 7 C 0.022 3.978 8 C 0.065 3.935 9 N -0.698 5.698 10 C 0.067 3.933 11 C 0.175 3.825 12 H 0.006 0.994 13 C -0.578 4.578 14 H 0.056 0.944 15 C 0.025 3.975 16 N -0.908 5.908 17 Si 1.066 2.934 18 H -0.286 1.286 19 H -0.283 1.283 20 H -0.287 1.287 21 C -0.102 4.102 22 C -0.118 4.118 23 H 0.061 0.939 24 H 0.061 0.939 25 H 0.060 0.940 26 H 0.111 0.889 27 H 0.108 0.892 28 H 0.023 0.977 29 H 0.066 0.934 30 H 0.068 0.932 31 H 0.075 0.925 32 H 0.329 0.671 33 H 0.073 0.927 34 H 0.068 0.932 35 H 0.266 0.734 36 H 0.120 0.880 37 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.583 -3.268 -8.598 10.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.112 4.112 3 C -0.131 4.131 4 C -0.156 4.156 5 C 0.050 3.950 6 N -0.224 5.224 7 C -0.107 4.107 8 C -0.066 4.066 9 N -0.325 5.325 10 C -0.063 4.063 11 C 0.069 3.931 12 H 0.023 0.977 13 C -0.618 4.618 14 H 0.075 0.925 15 C -0.180 4.180 16 N -0.544 5.544 17 Si 0.894 3.106 18 H -0.213 1.213 19 H -0.208 1.208 20 H -0.214 1.214 21 C -0.121 4.121 22 C -0.137 4.137 23 H 0.080 0.920 24 H 0.080 0.920 25 H 0.079 0.921 26 H 0.129 0.871 27 H 0.126 0.874 28 H 0.042 0.958 29 H 0.084 0.916 30 H 0.086 0.914 31 H 0.094 0.906 32 H 0.145 0.855 33 H 0.092 0.908 34 H 0.086 0.914 35 H 0.078 0.922 36 H 0.138 0.862 37 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -5.166 -3.681 -6.929 9.394 hybrid contribution -0.810 0.775 -1.581 1.938 sum -5.976 -2.906 -8.510 10.797 Atomic orbital electron populations 1.20692 0.91960 1.02218 1.01406 1.19719 0.95411 0.93310 1.02775 1.20749 0.93905 0.96988 1.01452 1.21518 0.94535 0.98428 1.01079 1.18597 0.89137 0.92033 0.95208 1.59985 1.03932 1.55809 1.02723 1.22851 0.97702 0.97540 0.92617 1.21999 0.91008 0.99530 0.94055 1.60887 1.61760 1.06498 1.03372 1.22398 0.94480 1.00480 0.88906 1.20181 0.92533 0.91241 0.89160 0.97663 1.21724 1.45792 0.99009 0.95233 0.92535 1.25772 0.95517 0.94481 1.02261 1.70850 1.35948 1.17706 1.29893 0.83575 0.76247 0.75482 0.75326 1.21268 1.20823 1.21384 1.20927 0.93217 0.97500 1.00441 1.20803 0.93939 0.96928 1.02032 0.91997 0.92029 0.92078 0.87119 0.87352 0.95831 0.91581 0.91408 0.90612 0.85526 0.90838 0.91382 0.92246 0.86226 0.86735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.34 10.01 36.01 0.36 -0.98 16 2 C -0.11 -1.86 5.88 -104.58 -0.62 -2.48 16 3 C -0.11 -2.04 9.69 -39.61 -0.38 -2.42 16 4 C -0.14 -2.80 8.69 -39.38 -0.34 -3.14 16 5 C 0.14 3.04 3.72 -83.79 -0.31 2.73 16 6 N -0.50 -10.79 4.50 -164.73 -0.74 -11.54 16 7 C 0.02 0.39 5.40 -3.77 -0.02 0.37 16 8 C 0.06 1.09 6.72 -3.77 -0.03 1.06 16 9 N -0.70 -13.24 6.91 -113.64 -0.79 -14.03 16 10 C 0.07 1.51 5.89 -3.77 -0.02 1.48 16 11 C 0.18 4.23 1.21 -68.81 -0.08 4.15 16 12 H 0.01 0.15 5.85 -51.93 -0.30 -0.15 16 13 C -0.58 -15.75 7.54 -34.44 -0.26 -16.01 16 14 H 0.06 1.61 7.82 -52.49 -0.41 1.20 16 15 C 0.02 0.68 5.45 -17.82 -0.10 0.59 16 16 N -0.91 -26.45 13.62 55.43 0.75 -25.69 16 17 Si 1.07 25.33 29.91 -169.99 -5.08 20.25 16 18 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 19 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 20 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 21 C -0.10 -1.96 9.97 -39.38 -0.39 -2.35 16 22 C -0.12 -2.00 9.69 -39.61 -0.38 -2.39 16 23 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 24 H 0.06 0.71 8.08 -51.93 -0.42 0.29 16 25 H 0.06 0.73 8.08 -51.92 -0.42 0.31 16 26 H 0.11 1.76 8.06 -52.49 -0.42 1.34 16 27 H 0.11 2.33 7.06 -52.49 -0.37 1.96 16 28 H 0.02 0.43 7.76 -51.93 -0.40 0.03 16 29 H 0.07 1.09 8.13 -51.93 -0.42 0.67 16 30 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.08 1.31 8.14 -51.93 -0.42 0.88 16 32 H 0.33 5.99 8.89 -39.29 -0.35 5.65 16 33 H 0.07 1.79 7.64 -51.93 -0.40 1.40 16 34 H 0.07 1.60 8.14 -51.93 -0.42 1.18 16 35 H 0.27 7.69 6.25 -40.82 -0.25 7.43 16 36 H 0.12 2.19 8.06 -52.49 -0.42 1.76 16 37 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 LS Contribution 298.43 15.07 4.50 4.50 Total: -1.00 -29.29 298.43 -9.44 -38.73 By element: Atomic # 1 Polarization: 12.67 SS G_CDS: -5.51 Total: 7.17 kcal Atomic # 6 Polarization: -16.81 SS G_CDS: -2.58 Total: -19.39 kcal Atomic # 7 Polarization: -50.48 SS G_CDS: -0.77 Total: -51.26 kcal Atomic # 14 Polarization: 25.33 SS G_CDS: -5.08 Total: 20.25 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -29.29 -9.44 -38.73 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000221059257.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.252 kcal (2) G-P(sol) polarization free energy of solvation -29.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.729 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds