Wall clock time and date at job start Mon Mar 30 2020 03:49:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38287 * 119.92508 * 2 1 4 4 C 1.38106 * 120.06958 * 179.97438 * 3 2 1 5 5 C 1.38913 * 119.92829 * 0.02562 * 4 3 2 6 6 N 1.39671 * 120.07346 * 179.97438 * 5 4 3 7 7 C 1.46959 * 111.00274 * 290.96641 * 6 5 4 8 8 C 1.53048 * 109.36412 * 183.18843 * 7 6 5 9 9 N 1.46947 * 109.36586 * 301.59518 * 8 7 6 10 10 C 1.46957 * 110.88066 * 59.32343 * 9 8 7 11 11 C 1.46961 * 110.99903 * 54.76414 * 6 5 4 12 12 H 1.08999 * 109.50770 * 296.78655 * 11 6 5 13 13 C 1.50695 * 109.48974 * 56.84414 * 11 6 5 14 14 H 1.08000 * 120.00055 * 25.46337 * 13 11 6 15 15 C 1.37878 * 120.00053 * 205.46004 * 13 11 6 16 16 N 1.31510 * 119.99930 * 353.40823 * 15 13 11 17 17 Si 1.86800 * 119.99839 * 173.40988 * 15 13 11 18 18 H 1.48496 * 109.47258 * 60.00056 * 17 15 13 19 19 H 1.48502 * 109.46961 * 180.02562 * 17 15 13 20 20 H 1.48499 * 109.47260 * 299.99753 * 17 15 13 21 21 C 1.38908 * 119.84846 * 0.25420 * 5 4 3 22 22 C 1.38104 * 119.92706 * 359.48771 * 21 5 4 23 23 H 1.09003 * 109.47258 * 89.99520 * 1 2 3 24 24 H 1.08998 * 109.47075 * 210.00205 * 1 2 3 25 25 H 1.09008 * 109.46756 * 329.99837 * 1 2 3 26 26 H 1.07992 * 119.96260 * 359.95657 * 3 2 1 27 27 H 1.07999 * 120.03111 * 180.02562 * 4 3 2 28 28 H 1.08995 * 109.48950 * 63.21700 * 7 6 5 29 29 H 1.09002 * 109.48494 * 303.15773 * 7 6 5 30 30 H 1.09006 * 109.48416 * 181.62498 * 8 7 6 31 31 H 1.09002 * 109.48632 * 61.56747 * 8 7 6 32 32 H 1.00897 * 111.00442 * 295.45073 * 9 8 7 33 33 H 1.09002 * 109.48863 * 180.70941 * 10 9 8 34 34 H 1.08997 * 109.48896 * 60.64307 * 10 9 8 35 35 H 0.97001 * 120.00322 * 2.19889 * 16 15 13 36 36 H 1.08000 * 120.03359 * 179.73198 * 21 5 4 37 37 H 1.07995 * 119.96737 * 180.25374 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1969 1.1985 0.0000 4 6 3.5779 1.2020 0.0005 5 6 4.2740 -0.0001 0.0005 6 7 5.6707 -0.0002 0.0005 7 6 6.1975 0.4907 -1.2806 8 6 7.7252 0.4004 -1.2692 9 7 8.2519 1.1919 -0.1487 10 6 7.7252 0.7010 1.1325 11 6 6.1974 0.7914 1.1212 12 1 5.8956 1.8323 1.0051 13 6 5.6522 0.2514 2.4181 14 1 5.3420 -0.7809 2.4854 15 6 5.5495 1.0753 3.5189 16 7 6.0453 2.2926 3.4777 17 14 4.7061 0.4622 5.0689 18 1 5.4213 -0.7340 5.5815 19 1 4.7265 1.5312 6.0994 20 1 3.2994 0.1023 4.7576 21 6 3.5778 -1.2022 -0.0053 22 6 2.1968 -1.1986 -0.0005 23 1 -0.3634 0.0001 -1.0277 24 1 -0.3633 -0.8900 0.5139 25 1 -0.3633 0.8901 0.5139 26 1 1.6551 2.1327 -0.0007 27 1 4.1161 2.1384 0.0010 28 1 5.8956 1.5281 -1.4243 29 1 5.8031 -0.1190 -2.0935 30 1 8.1196 0.7909 -2.2074 31 1 8.0270 -0.6406 -1.1528 32 1 8.0484 2.1724 -0.2714 33 1 8.1196 1.3108 1.9453 34 1 8.0270 -0.3364 1.2762 35 1 6.4549 2.6222 2.6625 36 1 4.1160 -2.1385 -0.0097 37 1 1.6549 -2.1327 -0.0009 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000221059257.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:49:21 Heat of formation + Delta-G solvation = 10.298956 kcal Electronic energy + Delta-G solvation = -18381.613354 eV Core-core repulsion = 15736.380082 eV Total energy + Delta-G solvation = -2645.233272 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.20198 -39.19830 -35.60038 -35.25278 -32.15419 -31.77886 -31.43479 -27.87568 -26.67475 -25.07018 -23.87420 -23.56680 -22.08733 -21.13109 -19.11471 -17.88338 -16.69333 -16.40498 -16.25126 -15.87279 -15.65827 -15.47605 -15.07690 -14.92969 -14.45116 -14.29900 -13.74439 -13.43009 -13.35496 -12.99179 -12.78837 -12.70865 -12.51675 -12.29607 -12.09580 -12.00069 -11.97842 -11.90317 -10.84548 -10.64414 -9.81013 -9.53363 -9.30519 -9.08511 -8.63749 -6.32483 0.47364 0.53456 1.48309 1.55255 1.74389 2.50957 2.85121 2.95061 3.21337 3.39433 3.94240 4.07275 4.08666 4.14077 4.19736 4.34723 4.38202 4.49309 4.57449 4.63232 4.70296 4.79050 4.84366 4.88036 4.89495 4.98717 5.13255 5.23281 5.28528 5.46006 5.68138 5.70943 5.74715 5.94394 6.02595 6.14827 6.34332 6.42947 6.60571 6.71111 7.43587 8.74173 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.015070 B = 0.011585 C = 0.007395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1857.583780 B = 2416.290083 C = 3785.529438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.108 4.108 3 C -0.122 4.122 4 C -0.159 4.159 5 C 0.113 3.887 6 N -0.507 5.507 7 C 0.023 3.977 8 C 0.067 3.933 9 N -0.691 5.691 10 C 0.082 3.918 11 C 0.185 3.815 12 H -0.025 1.025 13 C -0.580 4.580 14 H 0.041 0.959 15 C -0.021 4.021 16 N -0.932 5.932 17 Si 1.105 2.895 18 H -0.270 1.270 19 H -0.283 1.283 20 H -0.279 1.279 21 C -0.115 4.115 22 C -0.114 4.114 23 H 0.084 0.916 24 H 0.078 0.922 25 H 0.067 0.933 26 H 0.128 0.872 27 H 0.084 0.916 28 H 0.017 0.983 29 H 0.086 0.914 30 H 0.106 0.894 31 H 0.075 0.925 32 H 0.334 0.666 33 H 0.048 0.952 34 H 0.057 0.943 35 H 0.256 0.744 36 H 0.124 0.876 37 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.267 -4.617 -9.476 12.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.108 4.108 3 C -0.140 4.140 4 C -0.179 4.179 5 C 0.019 3.981 6 N -0.229 5.229 7 C -0.105 4.105 8 C -0.062 4.062 9 N -0.319 5.319 10 C -0.049 4.049 11 C 0.077 3.923 12 H -0.008 1.008 13 C -0.619 4.619 14 H 0.059 0.941 15 C -0.221 4.221 16 N -0.569 5.569 17 Si 0.928 3.072 18 H -0.195 1.195 19 H -0.209 1.209 20 H -0.204 1.204 21 C -0.134 4.134 22 C -0.133 4.133 23 H 0.102 0.898 24 H 0.097 0.903 25 H 0.086 0.914 26 H 0.146 0.854 27 H 0.102 0.898 28 H 0.035 0.965 29 H 0.104 0.896 30 H 0.124 0.876 31 H 0.094 0.906 32 H 0.150 0.850 33 H 0.066 0.934 34 H 0.076 0.924 35 H 0.066 0.934 36 H 0.142 0.858 37 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -6.846 -5.042 -7.842 11.566 hybrid contribution -0.353 1.170 -1.418 1.872 sum -7.198 -3.872 -9.259 12.351 Atomic orbital electron populations 1.20769 0.88591 1.03444 1.03202 1.20224 0.97816 0.92362 1.00378 1.21046 0.93017 0.98821 1.01134 1.21475 0.95854 0.97410 1.03168 1.18819 0.88965 0.92961 0.97330 1.59931 1.04764 1.55012 1.03201 1.22937 0.98512 0.97434 0.91657 1.22137 0.90083 0.99426 0.94598 1.60845 1.61346 1.07083 1.02582 1.22008 0.93374 0.99303 0.90175 1.19925 0.93296 0.89658 0.89372 1.00789 1.21894 1.45213 0.98124 0.96663 0.94098 1.26967 0.95695 0.94261 1.05131 1.70944 1.37693 1.18689 1.29585 0.83068 0.75977 0.75610 0.72560 1.19484 1.20871 1.20440 1.21120 0.94531 0.96870 1.00894 1.21226 0.93108 0.98673 1.00264 0.89768 0.90318 0.91410 0.85378 0.89800 0.96513 0.89579 0.87596 0.90645 0.84971 0.93363 0.92400 0.93364 0.85817 0.83187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.19 10.01 71.24 0.71 -1.48 16 2 C -0.11 -3.30 5.88 -19.84 -0.12 -3.41 16 3 C -0.12 -4.32 9.69 22.25 0.22 -4.10 16 4 C -0.16 -6.72 8.69 22.40 0.19 -6.53 16 5 C 0.11 4.82 3.72 38.21 0.14 4.96 16 6 N -0.51 -22.12 4.50 -675.09 -3.04 -25.16 16 7 C 0.02 0.81 5.40 86.31 0.47 1.28 16 8 C 0.07 2.17 6.72 86.31 0.58 2.75 16 9 N -0.69 -26.18 6.91 -513.45 -3.55 -29.73 16 10 C 0.08 3.80 5.89 86.31 0.51 4.31 16 11 C 0.19 9.26 1.21 44.17 0.05 9.31 16 12 H -0.03 -1.42 5.85 -2.39 -0.01 -1.43 16 13 C -0.58 -32.44 7.54 25.60 0.19 -32.25 16 14 H 0.04 2.37 7.82 -2.91 -0.02 2.35 16 15 C -0.02 -1.21 5.45 84.66 0.46 -0.75 16 16 N -0.93 -56.04 13.62 21.45 0.29 -55.75 16 17 Si 1.10 51.30 29.91 68.60 2.05 53.35 16 18 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 19 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 20 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 21 C -0.12 -4.32 9.97 22.40 0.22 -4.09 16 22 C -0.11 -3.57 9.69 22.25 0.22 -3.35 16 23 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 24 H 0.08 1.43 8.08 -2.39 -0.02 1.41 16 25 H 0.07 1.37 8.08 -2.38 -0.02 1.35 16 26 H 0.13 3.96 8.06 -2.91 -0.02 3.93 16 27 H 0.08 3.85 7.06 -2.91 -0.02 3.83 16 28 H 0.02 0.62 7.76 -2.39 -0.02 0.60 16 29 H 0.09 2.73 8.13 -2.39 -0.02 2.71 16 30 H 0.11 2.67 8.14 -2.38 -0.02 2.65 16 31 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 32 H 0.33 12.25 8.89 -89.70 -0.80 11.45 16 33 H 0.05 2.46 7.64 -2.39 -0.02 2.44 16 34 H 0.06 2.78 8.14 -2.39 -0.02 2.76 16 35 H 0.26 15.51 6.25 -92.71 -0.58 14.93 16 36 H 0.12 4.41 8.06 -2.91 -0.02 4.39 16 37 H 0.15 3.56 8.06 -2.91 -0.02 3.53 16 Total: -1.00 -64.95 298.43 0.05 -64.90 By element: Atomic # 1 Polarization: 25.29 SS G_CDS: 0.44 Total: 25.73 kcal Atomic # 6 Polarization: -37.20 SS G_CDS: 3.85 Total: -33.35 kcal Atomic # 7 Polarization: -104.34 SS G_CDS: -6.30 Total: -110.64 kcal Atomic # 14 Polarization: 51.30 SS G_CDS: 2.05 Total: 53.35 kcal Total: -64.95 0.05 -64.90 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000221059257.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.203 kcal (2) G-P(sol) polarization free energy of solvation -64.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.904 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds