Wall clock time and date at job start Mon Mar 30 2020 03:49:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38281 * 119.92378 * 2 1 4 4 C 1.38108 * 120.07475 * 179.97438 * 3 2 1 5 5 C 1.38911 * 119.92262 * 359.97438 * 4 3 2 6 6 N 1.39678 * 120.07064 * 179.97438 * 5 4 3 7 7 C 1.46960 * 110.99636 * 240.22187 * 6 5 4 8 8 C 1.53050 * 109.36487 * 176.81108 * 7 6 5 9 9 N 1.46953 * 109.36247 * 58.40293 * 8 7 6 10 10 C 1.46952 * 110.88170 * 300.67662 * 9 8 7 11 11 C 1.46953 * 111.00074 * 116.42514 * 6 5 4 12 12 H 1.09000 * 109.50953 * 63.20724 * 11 6 5 13 13 C 1.50695 * 109.48686 * 303.15235 * 11 6 5 14 14 H 1.08000 * 120.00118 * 354.44610 * 13 11 6 15 15 C 1.37879 * 119.99969 * 174.45718 * 13 11 6 16 16 N 1.31511 * 120.00508 * 154.49835 * 15 13 11 17 17 Si 1.86803 * 119.99675 * 334.49224 * 15 13 11 18 18 H 1.48497 * 109.47237 * 270.00160 * 17 15 13 19 19 H 1.48502 * 109.47057 * 150.00397 * 17 15 13 20 20 H 1.48500 * 109.47131 * 30.00491 * 17 15 13 21 21 C 1.38909 * 119.85303 * 0.25556 * 5 4 3 22 22 C 1.38108 * 119.92243 * 359.49493 * 21 5 4 23 23 H 1.09004 * 109.47484 * 90.00567 * 1 2 3 24 24 H 1.09004 * 109.47554 * 209.99978 * 1 2 3 25 25 H 1.09001 * 109.47597 * 330.00464 * 1 2 3 26 26 H 1.07996 * 119.96537 * 359.97438 * 3 2 1 27 27 H 1.08001 * 120.03909 * 179.97438 * 4 3 2 28 28 H 1.09002 * 109.49153 * 56.84340 * 7 6 5 29 29 H 1.09005 * 109.50889 * 296.78935 * 7 6 5 30 30 H 1.08998 * 109.49169 * 298.43551 * 8 7 6 31 31 H 1.08999 * 109.50712 * 178.37793 * 8 7 6 32 32 H 1.00898 * 111.00313 * 176.81013 * 9 8 7 33 33 H 1.09002 * 109.49506 * 299.35687 * 10 9 8 34 34 H 1.08996 * 109.51384 * 179.29956 * 10 9 8 35 35 H 0.96999 * 119.99777 * 354.95067 * 16 15 13 36 36 H 1.08001 * 120.03892 * 179.72408 * 21 5 4 37 37 H 1.08000 * 119.96129 * 180.25421 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1967 1.1985 0.0000 4 6 3.5778 1.2021 0.0005 5 6 4.2739 0.0000 0.0016 6 7 5.6707 0.0001 0.0016 7 6 6.1973 -0.6824 -1.1886 8 6 7.7251 -0.5913 -1.1915 9 7 8.2518 -1.2008 0.0376 10 6 7.7252 -0.5184 1.2279 11 6 6.1974 -0.6093 1.2307 12 1 5.8955 -1.6557 1.2765 13 6 5.6522 0.1240 2.4290 14 1 5.0545 1.0131 2.2921 15 6 5.9166 -0.3398 3.7002 16 7 5.9051 0.4914 4.7192 17 14 6.2912 -2.1492 3.9750 18 1 5.0269 -2.8819 4.2390 19 1 7.2004 -2.2950 5.1401 20 1 6.9442 -2.7089 2.7644 21 6 3.5778 -1.2021 -0.0032 22 6 2.1968 -1.1985 0.0015 23 1 -0.3634 -0.0001 -1.0277 24 1 -0.3634 -0.8900 0.5138 25 1 -0.3634 0.8900 0.5137 26 1 1.6550 2.1327 -0.0004 27 1 4.1160 2.1385 0.0001 28 1 5.8029 -0.2052 -2.0858 29 1 5.8954 -1.7297 -1.1712 30 1 8.0270 0.4550 -1.2368 31 1 8.1197 -1.1216 -2.0582 32 1 9.2608 -1.2008 0.0377 33 1 8.0271 0.5289 1.2101 34 1 8.1195 -0.9952 2.1252 35 1 5.7832 1.4418 4.5685 36 1 4.1160 -2.1385 -0.0069 37 1 1.6550 -2.1328 0.0019 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000221059317.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:49:23 Heat of formation + Delta-G solvation = 37.199078 kcal Electronic energy + Delta-G solvation = -18323.877370 eV Core-core repulsion = 15679.810574 eV Total energy + Delta-G solvation = -2644.066795 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.56963 -37.58752 -34.16909 -32.97318 -30.90398 -30.33738 -30.15986 -26.74214 -24.87631 -23.53176 -22.21549 -21.59068 -20.47025 -18.72685 -17.58770 -16.54739 -15.39239 -14.85945 -14.66130 -14.55714 -13.94439 -13.61918 -13.44772 -13.36351 -13.00046 -12.92008 -12.56586 -11.93556 -11.76747 -11.63836 -11.29660 -11.08977 -10.88376 -10.61768 -10.53116 -10.31511 -10.16245 -9.79855 -9.00803 -8.35030 -8.22554 -7.94977 -7.77012 -7.50116 -6.49769 -4.04463 1.90708 1.99731 3.42514 3.46382 3.61728 4.30063 4.50174 4.63326 4.78987 5.21660 5.28167 5.28995 5.48622 5.53342 5.68648 5.72638 5.75540 5.78986 5.97642 6.00838 6.08746 6.18378 6.29877 6.32344 6.41590 6.47789 6.63045 6.72122 6.85625 7.05064 7.08603 7.29144 7.40405 7.52723 7.72092 7.87348 8.15807 8.37368 8.43961 9.00102 9.59368 10.88453 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.018179 B = 0.009986 C = 0.007604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1539.909367 B = 2803.374034 C = 3681.325219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.111 4.111 3 C -0.117 4.117 4 C -0.095 4.095 5 C 0.142 3.858 6 N -0.504 5.504 7 C 0.059 3.941 8 C 0.065 3.935 9 N -0.700 5.700 10 C 0.065 3.935 11 C 0.207 3.793 12 H 0.006 0.994 13 C -0.600 4.600 14 H 0.067 0.933 15 C 0.043 3.957 16 N -0.892 5.892 17 Si 1.024 2.976 18 H -0.285 1.285 19 H -0.286 1.286 20 H -0.269 1.269 21 C -0.145 4.145 22 C -0.113 4.113 23 H 0.061 0.939 24 H 0.060 0.940 25 H 0.061 0.939 26 H 0.114 0.886 27 H 0.120 0.880 28 H 0.066 0.934 29 H 0.036 0.964 30 H 0.033 0.967 31 H 0.068 0.932 32 H 0.330 0.670 33 H 0.032 0.968 34 H 0.068 0.932 35 H 0.271 0.729 36 H 0.113 0.887 37 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.505 -2.107 -11.390 12.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.111 4.111 3 C -0.136 4.136 4 C -0.113 4.113 5 C 0.048 3.952 6 N -0.226 5.226 7 C -0.068 4.068 8 C -0.065 4.065 9 N -0.330 5.330 10 C -0.064 4.064 11 C 0.101 3.899 12 H 0.023 0.977 13 C -0.638 4.638 14 H 0.085 0.915 15 C -0.165 4.165 16 N -0.525 5.525 17 Si 0.852 3.148 18 H -0.212 1.212 19 H -0.212 1.212 20 H -0.194 1.194 21 C -0.165 4.165 22 C -0.132 4.132 23 H 0.080 0.920 24 H 0.079 0.921 25 H 0.080 0.920 26 H 0.132 0.868 27 H 0.138 0.862 28 H 0.085 0.915 29 H 0.054 0.946 30 H 0.051 0.949 31 H 0.086 0.914 32 H 0.146 0.854 33 H 0.050 0.950 34 H 0.086 0.914 35 H 0.081 0.919 36 H 0.131 0.869 37 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -3.481 -3.229 -10.191 11.243 hybrid contribution 0.031 1.138 -0.982 1.503 sum -3.451 -2.091 -11.173 11.879 Atomic orbital electron populations 1.20692 0.91958 1.02231 1.01417 1.19722 0.95415 0.93326 1.02639 1.20822 0.93959 0.96986 1.01845 1.20950 0.93173 0.97630 0.99596 1.18582 0.89046 0.92101 0.95459 1.59884 1.03955 1.55370 1.03376 1.22138 0.94501 0.96825 0.93378 1.21870 0.94808 0.97134 0.92705 1.60693 1.11977 1.57452 1.02916 1.22545 0.97708 0.95691 0.90500 1.19694 0.89923 0.93341 0.86935 0.97652 1.21847 1.37297 1.14415 0.90200 0.91475 1.25583 0.93606 1.05068 0.92218 1.70810 1.42978 1.04891 1.33788 0.84280 0.77468 0.76772 0.76301 1.21172 1.21165 1.19425 1.21579 0.94615 0.98468 1.01835 1.20746 0.93861 0.96982 1.01566 0.91978 0.92070 0.92036 0.86751 0.86220 0.91535 0.94603 0.94907 0.91360 0.85391 0.94990 0.91361 0.91919 0.86939 0.87005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.32 10.01 36.00 0.36 -0.96 16 2 C -0.11 -1.82 5.88 -104.59 -0.62 -2.43 16 3 C -0.12 -2.02 9.69 -39.61 -0.38 -2.40 16 4 C -0.09 -1.86 9.46 -39.38 -0.37 -2.23 16 5 C 0.14 2.98 3.61 -83.79 -0.30 2.68 16 6 N -0.50 -10.91 4.50 -164.73 -0.74 -11.65 16 7 C 0.06 1.07 5.31 -3.77 -0.02 1.05 16 8 C 0.06 1.07 6.72 -3.77 -0.03 1.05 16 9 N -0.70 -12.95 6.90 -113.64 -0.78 -13.73 16 10 C 0.06 1.44 5.60 -3.77 -0.02 1.42 16 11 C 0.21 5.03 1.27 -68.81 -0.09 4.94 16 12 H 0.01 0.15 5.72 -51.93 -0.30 -0.14 16 13 C -0.60 -16.74 8.16 -34.44 -0.28 -17.02 16 14 H 0.07 2.05 7.24 -52.49 -0.38 1.67 16 15 C 0.04 1.22 5.23 -17.82 -0.09 1.12 16 16 N -0.89 -27.07 13.70 55.43 0.76 -26.31 16 17 Si 1.02 25.24 26.57 -169.99 -4.52 20.73 16 18 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 19 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 20 H -0.27 -6.29 6.07 56.52 0.34 -5.95 16 21 C -0.14 -2.85 8.64 -39.38 -0.34 -3.19 16 22 C -0.11 -1.96 9.69 -39.61 -0.38 -2.34 16 23 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 24 H 0.06 0.71 8.08 -51.93 -0.42 0.29 16 25 H 0.06 0.71 8.08 -51.93 -0.42 0.29 16 26 H 0.11 1.66 8.06 -52.49 -0.42 1.23 16 27 H 0.12 2.31 8.06 -52.49 -0.42 1.89 16 28 H 0.07 1.08 8.13 -51.93 -0.42 0.66 16 29 H 0.04 0.66 7.24 -51.93 -0.38 0.29 16 30 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.33 5.16 8.90 -39.29 -0.35 4.81 16 33 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.07 1.57 6.04 -51.93 -0.31 1.26 16 35 H 0.27 8.21 8.73 -40.82 -0.36 7.86 16 36 H 0.11 2.19 7.06 -52.49 -0.37 1.82 16 37 H 0.11 1.65 8.06 -52.49 -0.42 1.23 16 LS Contribution 293.21 15.07 4.42 4.42 Total: -1.00 -30.60 293.21 -8.95 -39.55 By element: Atomic # 1 Polarization: 10.83 SS G_CDS: -5.52 Total: 5.31 kcal Atomic # 6 Polarization: -15.75 SS G_CDS: -2.57 Total: -18.31 kcal Atomic # 7 Polarization: -50.93 SS G_CDS: -0.77 Total: -51.69 kcal Atomic # 14 Polarization: 25.24 SS G_CDS: -4.52 Total: 20.73 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -30.60 -8.95 -39.55 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000221059317.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.747 kcal (2) G-P(sol) polarization free energy of solvation -30.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.548 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds