Wall clock time and date at job start Mon Mar 30 2020 03:49:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38281 * 119.92378 * 2 1 4 4 C 1.38108 * 120.07475 * 179.97438 * 3 2 1 5 5 C 1.38911 * 119.92262 * 359.97438 * 4 3 2 6 6 N 1.39678 * 120.07064 * 179.97438 * 5 4 3 7 7 C 1.46960 * 110.99636 * 240.22187 * 6 5 4 8 8 C 1.53050 * 109.36487 * 176.81108 * 7 6 5 9 9 N 1.46953 * 109.36247 * 58.40293 * 8 7 6 10 10 C 1.46952 * 110.88170 * 300.67662 * 9 8 7 11 11 C 1.46953 * 111.00074 * 116.42514 * 6 5 4 12 12 H 1.09000 * 109.50953 * 63.20724 * 11 6 5 13 13 C 1.50695 * 109.48686 * 303.15235 * 11 6 5 14 14 H 1.08000 * 120.00118 * 354.44610 * 13 11 6 15 15 C 1.37879 * 119.99969 * 174.45718 * 13 11 6 16 16 N 1.31511 * 120.00508 * 154.49835 * 15 13 11 17 17 Si 1.86803 * 119.99675 * 334.49224 * 15 13 11 18 18 H 1.48497 * 109.47237 * 270.00160 * 17 15 13 19 19 H 1.48502 * 109.47057 * 150.00397 * 17 15 13 20 20 H 1.48500 * 109.47131 * 30.00491 * 17 15 13 21 21 C 1.38909 * 119.85303 * 0.25556 * 5 4 3 22 22 C 1.38108 * 119.92243 * 359.49493 * 21 5 4 23 23 H 1.09004 * 109.47484 * 90.00567 * 1 2 3 24 24 H 1.09004 * 109.47554 * 209.99978 * 1 2 3 25 25 H 1.09001 * 109.47597 * 330.00464 * 1 2 3 26 26 H 1.07996 * 119.96537 * 359.97438 * 3 2 1 27 27 H 1.08001 * 120.03909 * 179.97438 * 4 3 2 28 28 H 1.09002 * 109.49153 * 56.84340 * 7 6 5 29 29 H 1.09005 * 109.50889 * 296.78935 * 7 6 5 30 30 H 1.08998 * 109.49169 * 298.43551 * 8 7 6 31 31 H 1.08999 * 109.50712 * 178.37793 * 8 7 6 32 32 H 1.00898 * 111.00313 * 176.81013 * 9 8 7 33 33 H 1.09002 * 109.49506 * 299.35687 * 10 9 8 34 34 H 1.08996 * 109.51384 * 179.29956 * 10 9 8 35 35 H 0.96999 * 119.99777 * 354.95067 * 16 15 13 36 36 H 1.08001 * 120.03892 * 179.72408 * 21 5 4 37 37 H 1.08000 * 119.96129 * 180.25421 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1967 1.1985 0.0000 4 6 3.5778 1.2021 0.0005 5 6 4.2739 0.0000 0.0016 6 7 5.6707 0.0001 0.0016 7 6 6.1973 -0.6824 -1.1886 8 6 7.7251 -0.5913 -1.1915 9 7 8.2518 -1.2008 0.0376 10 6 7.7252 -0.5184 1.2279 11 6 6.1974 -0.6093 1.2307 12 1 5.8955 -1.6557 1.2765 13 6 5.6522 0.1240 2.4290 14 1 5.0545 1.0131 2.2921 15 6 5.9166 -0.3398 3.7002 16 7 5.9051 0.4914 4.7192 17 14 6.2912 -2.1492 3.9750 18 1 5.0269 -2.8819 4.2390 19 1 7.2004 -2.2950 5.1401 20 1 6.9442 -2.7089 2.7644 21 6 3.5778 -1.2021 -0.0032 22 6 2.1968 -1.1985 0.0015 23 1 -0.3634 -0.0001 -1.0277 24 1 -0.3634 -0.8900 0.5138 25 1 -0.3634 0.8900 0.5137 26 1 1.6550 2.1327 -0.0004 27 1 4.1160 2.1385 0.0001 28 1 5.8029 -0.2052 -2.0858 29 1 5.8954 -1.7297 -1.1712 30 1 8.0270 0.4550 -1.2368 31 1 8.1197 -1.1216 -2.0582 32 1 9.2608 -1.2008 0.0377 33 1 8.0271 0.5289 1.2101 34 1 8.1195 -0.9952 2.1252 35 1 5.7832 1.4418 4.5685 36 1 4.1160 -2.1385 -0.0069 37 1 1.6550 -2.1328 0.0019 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000221059317.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:49:23 Heat of formation + Delta-G solvation = 15.489623 kcal Electronic energy + Delta-G solvation = -18324.818763 eV Core-core repulsion = 15679.810574 eV Total energy + Delta-G solvation = -2645.008188 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.09877 -39.06981 -35.65043 -35.06659 -32.25322 -31.96541 -31.73904 -28.21539 -26.58428 -25.09438 -23.64945 -23.35899 -21.89774 -20.39791 -19.67733 -18.13396 -16.86526 -16.41257 -16.26889 -16.05324 -15.50296 -15.40901 -15.10943 -14.51684 -14.41955 -14.35104 -14.09955 -13.86207 -13.23142 -13.00172 -12.75905 -12.70183 -12.50506 -12.26435 -12.04556 -11.93094 -11.82166 -11.62538 -11.07046 -10.40489 -9.78333 -9.49854 -9.19788 -9.17637 -8.77193 -6.31261 0.48437 0.55813 1.44202 1.46665 1.68310 2.44888 2.85227 2.97710 3.09795 3.37409 3.97830 4.08279 4.09627 4.15530 4.31556 4.37492 4.48757 4.53490 4.57418 4.60435 4.73805 4.82166 4.85466 4.89236 4.92289 5.04853 5.14972 5.23938 5.29188 5.47501 5.69742 5.72563 5.76942 5.95629 6.05583 6.08682 6.33547 6.52238 6.68400 6.79936 7.40158 8.59478 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.018179 B = 0.009986 C = 0.007604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1539.909367 B = 2803.374034 C = 3681.325219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.108 4.108 3 C -0.120 4.120 4 C -0.117 4.117 5 C 0.111 3.889 6 N -0.516 5.516 7 C 0.057 3.943 8 C 0.066 3.934 9 N -0.697 5.697 10 C 0.073 3.927 11 C 0.214 3.786 12 H -0.006 1.006 13 C -0.594 4.594 14 H 0.027 0.973 15 C -0.004 4.004 16 N -0.924 5.924 17 Si 1.068 2.932 18 H -0.277 1.277 19 H -0.281 1.281 20 H -0.249 1.249 21 C -0.161 4.161 22 C -0.117 4.117 23 H 0.085 0.915 24 H 0.072 0.928 25 H 0.071 0.929 26 H 0.140 0.860 27 H 0.108 0.892 28 H 0.085 0.915 29 H 0.033 0.967 30 H 0.031 0.969 31 H 0.109 0.891 32 H 0.350 0.650 33 H 0.014 0.986 34 H 0.059 0.941 35 H 0.255 0.745 36 H 0.108 0.892 37 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.254 -3.688 -13.074 14.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.108 4.108 3 C -0.139 4.139 4 C -0.136 4.136 5 C 0.017 3.983 6 N -0.238 5.238 7 C -0.070 4.070 8 C -0.064 4.064 9 N -0.329 5.329 10 C -0.057 4.057 11 C 0.107 3.893 12 H 0.011 0.989 13 C -0.632 4.632 14 H 0.046 0.954 15 C -0.205 4.205 16 N -0.558 5.558 17 Si 0.889 3.111 18 H -0.203 1.203 19 H -0.207 1.207 20 H -0.173 1.173 21 C -0.181 4.181 22 C -0.135 4.135 23 H 0.103 0.897 24 H 0.091 0.909 25 H 0.090 0.910 26 H 0.158 0.842 27 H 0.127 0.873 28 H 0.103 0.897 29 H 0.052 0.948 30 H 0.049 0.951 31 H 0.127 0.873 32 H 0.168 0.832 33 H 0.032 0.968 34 H 0.077 0.923 35 H 0.064 0.936 36 H 0.127 0.873 37 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -4.224 -4.803 -11.914 13.522 hybrid contribution 0.158 1.721 -0.560 1.816 sum -4.066 -3.083 -12.474 13.477 Atomic orbital electron populations 1.20765 0.88666 1.03365 1.03218 1.20228 0.97788 0.92465 1.00338 1.21167 0.93074 0.98794 1.00842 1.21070 0.94582 0.96995 1.00965 1.18786 0.88926 0.93066 0.97507 1.59799 1.04853 1.55727 1.03445 1.22280 0.95627 0.96536 0.92576 1.22001 0.93697 0.97622 0.93038 1.60592 1.13508 1.56677 1.02140 1.22193 0.96411 0.94924 0.92132 1.19433 0.91008 0.91935 0.86958 0.98888 1.21913 1.36213 1.12987 0.92082 0.95424 1.26818 0.93270 1.08192 0.92204 1.70930 1.46024 1.04247 1.34607 0.83722 0.77885 0.72347 0.77108 1.20316 1.20712 1.17316 1.21654 0.95858 0.97737 1.02866 1.21127 0.93130 0.98747 1.00524 0.89687 0.90904 0.91006 0.84174 0.87344 0.89704 0.94831 0.95087 0.87326 0.83158 0.96819 0.92276 0.93558 0.87350 0.84209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.20 10.01 71.23 0.71 -1.49 16 2 C -0.11 -3.31 5.88 -19.85 -0.12 -3.42 16 3 C -0.12 -4.02 9.69 22.25 0.22 -3.80 16 4 C -0.12 -4.70 9.46 22.40 0.21 -4.49 16 5 C 0.11 4.71 3.61 38.21 0.14 4.85 16 6 N -0.52 -22.55 4.50 -675.08 -3.04 -25.59 16 7 C 0.06 1.99 5.31 86.31 0.46 2.45 16 8 C 0.07 2.02 6.72 86.31 0.58 2.60 16 9 N -0.70 -24.36 6.90 -513.45 -3.54 -27.90 16 10 C 0.07 3.26 5.60 86.31 0.48 3.74 16 11 C 0.21 10.45 1.27 44.18 0.06 10.51 16 12 H -0.01 -0.32 5.72 -2.39 -0.01 -0.34 16 13 C -0.59 -34.27 8.16 25.60 0.21 -34.06 16 14 H 0.03 1.78 7.24 -2.91 -0.02 1.76 16 15 C 0.00 -0.23 5.23 84.66 0.44 0.21 16 16 N -0.92 -57.92 13.70 21.45 0.29 -57.63 16 17 Si 1.07 51.26 26.57 68.60 1.82 53.09 16 18 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 19 H -0.28 -13.26 7.11 99.48 0.71 -12.55 16 20 H -0.25 -11.08 6.07 99.48 0.60 -10.48 16 21 C -0.16 -6.28 8.64 22.40 0.19 -6.09 16 22 C -0.12 -3.84 9.69 22.25 0.22 -3.63 16 23 H 0.08 1.47 8.14 -2.38 -0.02 1.45 16 24 H 0.07 1.41 8.08 -2.39 -0.02 1.39 16 25 H 0.07 1.40 8.08 -2.39 -0.02 1.39 16 26 H 0.14 3.82 8.06 -2.91 -0.02 3.80 16 27 H 0.11 4.43 8.06 -2.91 -0.02 4.40 16 28 H 0.08 2.63 8.13 -2.39 -0.02 2.61 16 29 H 0.03 1.19 7.24 -2.38 -0.02 1.18 16 30 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.11 2.52 8.14 -2.39 -0.02 2.50 16 32 H 0.35 10.02 8.90 -89.70 -0.80 9.23 16 33 H 0.01 0.64 8.14 -2.39 -0.02 0.62 16 34 H 0.06 2.70 6.04 -2.39 -0.01 2.69 16 35 H 0.26 16.31 8.73 -92.71 -0.81 15.50 16 36 H 0.11 4.20 7.06 -2.91 -0.02 4.18 16 37 H 0.14 3.72 8.06 -2.91 -0.02 3.70 16 Total: -1.00 -68.29 293.21 -0.55 -68.84 By element: Atomic # 1 Polarization: 21.71 SS G_CDS: 0.12 Total: 21.82 kcal Atomic # 6 Polarization: -36.43 SS G_CDS: 3.80 Total: -32.63 kcal Atomic # 7 Polarization: -104.83 SS G_CDS: -6.29 Total: -111.12 kcal Atomic # 14 Polarization: 51.26 SS G_CDS: 1.82 Total: 53.09 kcal Total: -68.29 -0.55 -68.84 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000221059317.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.329 kcal (2) G-P(sol) polarization free energy of solvation -68.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.840 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds