Wall clock time and date at job start Mon Mar 30 2020 04:05:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09006 * 109.48684 * 2 1 4 4 C 1.53047 * 109.48853 * 239.96000 * 2 1 3 5 5 N 1.46964 * 109.36265 * 181.60676 * 4 2 1 6 6 C 1.46951 * 110.87866 * 59.32287 * 5 4 2 7 7 C 1.53056 * 109.36457 * 300.67680 * 6 5 4 8 8 H 1.09002 * 109.48880 * 298.41613 * 7 6 5 9 9 C 1.50694 * 109.48854 * 178.37055 * 7 6 5 10 10 H 1.08008 * 119.99919 * 239.99565 * 9 7 6 11 11 C 1.37879 * 120.00399 * 60.00339 * 9 7 6 12 12 N 1.31520 * 119.99346 * 359.97438 * 11 9 7 13 13 Si 1.86803 * 120.00368 * 179.97438 * 11 9 7 14 14 H 1.48499 * 109.46853 * 89.99622 * 13 11 9 15 15 H 1.48504 * 109.46956 * 209.99793 * 13 11 9 16 16 H 1.48494 * 109.46805 * 329.99802 * 13 11 9 17 17 N 1.46951 * 109.50664 * 120.05256 * 2 1 3 18 18 C 1.39669 * 111.00407 * 303.16984 * 17 2 1 19 19 C 1.38910 * 120.07323 * 296.29667 * 18 17 2 20 20 C 1.38109 * 119.92260 * 179.76542 * 19 18 17 21 21 C 1.38280 * 120.07435 * 0.51602 * 20 19 18 22 22 C 1.38289 * 120.15178 * 359.74115 * 21 20 19 23 23 C 1.38101 * 120.07090 * 359.97438 * 22 21 20 24 24 H 1.09002 * 109.47209 * 185.81928 * 1 2 3 25 25 H 1.09001 * 109.47118 * 305.81307 * 1 2 3 26 26 H 1.08996 * 109.47078 * 65.81833 * 1 2 3 27 27 H 1.09003 * 109.48799 * 301.57257 * 4 2 1 28 28 H 1.09004 * 109.48986 * 61.64176 * 4 2 1 29 29 H 1.00895 * 110.99799 * 295.45306 * 5 4 2 30 30 H 1.08996 * 109.49317 * 60.64495 * 6 5 4 31 31 H 1.09002 * 109.48977 * 180.69228 * 6 5 4 32 32 H 0.97004 * 119.99694 * 180.02562 * 12 11 9 33 33 H 1.08003 * 120.04058 * 0.02562 * 19 18 17 34 34 H 1.08005 * 119.96098 * 180.25263 * 20 19 18 35 35 H 1.08006 * 119.92363 * 179.71875 * 21 20 19 36 36 H 1.08001 * 119.96202 * 179.97438 * 22 21 20 37 37 H 1.08000 * 120.03291 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8936 1.0276 0.0000 4 6 2.0406 -0.7223 -1.2490 5 7 3.5097 -0.7544 -1.2269 6 6 4.0004 -1.4482 -0.0280 7 6 3.4898 -0.7259 1.2211 8 1 3.8760 0.2933 1.2352 9 6 3.9582 -1.4581 2.4520 10 1 3.2371 -1.8581 3.1496 11 6 5.3073 -1.6175 2.6880 12 7 6.1853 -1.1307 1.8383 13 14 5.8879 -2.5245 4.2143 14 1 6.0234 -3.9714 3.9086 15 1 7.2033 -1.9834 4.6412 16 1 4.8986 -2.3398 5.3061 17 7 2.0207 -0.6937 1.1989 18 6 1.5154 -0.1046 2.3602 19 6 1.8495 1.2057 2.6780 20 6 1.3442 1.7868 3.8245 21 6 0.5152 1.0622 4.6611 22 6 0.1850 -0.2443 4.3505 23 6 0.6820 -0.8294 3.2026 24 1 -0.3634 -1.0224 0.1042 25 1 -0.3633 0.6013 0.8334 26 1 -0.3633 0.4209 -0.9375 27 1 1.6547 -1.7416 -1.2629 28 1 1.7018 -0.1926 -2.1394 29 1 3.8927 0.1771 -1.2879 30 1 3.6368 -2.4757 -0.0280 31 1 5.0904 -1.4481 -0.0283 32 1 7.1344 -1.2431 2.0041 33 1 2.5002 1.7709 2.0272 34 1 1.6002 2.8069 4.0701 35 1 0.1251 1.5175 5.5595 36 1 -0.4624 -0.8075 5.0063 37 1 0.4240 -1.8499 2.9607 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000221059814.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:05:21 Heat of formation + Delta-G solvation = 39.009751 kcal Electronic energy + Delta-G solvation = -18648.577591 eV Core-core repulsion = 16004.589312 eV Total energy + Delta-G solvation = -2643.988279 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.71243 -37.42404 -33.59193 -33.39271 -31.13784 -30.34642 -28.76406 -26.61035 -25.30407 -23.36188 -22.07728 -21.15525 -20.77579 -19.13218 -16.81567 -16.19982 -15.44008 -15.02776 -14.76444 -14.19246 -14.05460 -13.95223 -13.53069 -12.90198 -12.71974 -12.38112 -11.94735 -11.91766 -11.63487 -11.50177 -11.05919 -10.96174 -10.76422 -10.64263 -10.55597 -10.39589 -10.10818 -9.87438 -9.38408 -8.57293 -8.35101 -7.91449 -7.65416 -7.33949 -6.09675 -4.11692 1.95410 1.99662 3.28421 3.34774 3.39482 4.34795 4.36861 4.64885 5.15129 5.26108 5.39579 5.43069 5.48627 5.59873 5.66741 5.72836 5.94587 5.98475 6.07375 6.12990 6.24397 6.37217 6.41783 6.57250 6.61864 6.72281 6.82278 6.93641 7.02290 7.07912 7.25967 7.44098 7.63051 7.71382 7.84700 8.01536 8.27050 8.29497 8.49129 8.93966 9.52483 10.97734 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.016261 B = 0.011940 C = 0.007760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1721.503041 B = 2344.434675 C = 3607.414060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.048 3.952 3 H 0.030 0.970 4 C 0.068 3.932 5 N -0.697 5.697 6 C 0.064 3.936 7 C 0.193 3.807 8 H 0.002 0.998 9 C -0.500 4.500 10 H 0.064 0.936 11 C 0.062 3.938 12 N -0.894 5.894 13 Si 0.897 3.103 14 H -0.279 1.279 15 H -0.287 1.287 16 H -0.274 1.274 17 N -0.502 5.502 18 C 0.151 3.849 19 C -0.145 4.145 20 C -0.115 4.115 21 C -0.144 4.144 22 C -0.121 4.121 23 C -0.104 4.104 24 H 0.062 0.938 25 H 0.049 0.951 26 H 0.052 0.948 27 H 0.074 0.926 28 H 0.063 0.937 29 H 0.328 0.672 30 H 0.057 0.943 31 H 0.110 0.890 32 H 0.262 0.738 33 H 0.110 0.890 34 H 0.110 0.890 35 H 0.111 0.889 36 H 0.114 0.886 37 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.662 3.695 -0.529 10.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.061 4.061 3 H 0.048 0.952 4 C -0.062 4.062 5 N -0.324 5.324 6 C -0.065 4.065 7 C 0.088 3.912 8 H 0.020 0.980 9 C -0.539 4.539 10 H 0.082 0.918 11 C -0.139 4.139 12 N -0.533 5.533 13 Si 0.725 3.275 14 H -0.205 1.205 15 H -0.213 1.213 16 H -0.199 1.199 17 N -0.225 5.225 18 C 0.057 3.943 19 C -0.165 4.165 20 C -0.134 4.134 21 C -0.162 4.162 22 C -0.139 4.139 23 C -0.123 4.123 24 H 0.081 0.919 25 H 0.069 0.931 26 H 0.071 0.929 27 H 0.092 0.908 28 H 0.082 0.918 29 H 0.144 0.856 30 H 0.075 0.925 31 H 0.127 0.873 32 H 0.072 0.928 33 H 0.128 0.872 34 H 0.128 0.872 35 H 0.129 0.871 36 H 0.132 0.868 37 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -9.541 2.628 -1.032 9.950 hybrid contribution 0.625 1.080 1.716 2.122 sum -8.916 3.708 0.685 9.680 Atomic orbital electron populations 1.21781 0.95034 1.02205 1.00757 1.22393 0.95356 0.95532 0.92858 0.95203 1.22068 0.89400 1.00533 0.94221 1.60964 1.05978 1.22491 1.42954 1.22370 1.02601 0.96633 0.84907 1.20003 0.79043 0.95660 0.96536 0.98050 1.21025 0.91581 1.35343 1.05947 0.91831 1.24894 0.96619 0.95622 0.96801 1.69843 1.01653 1.45849 1.35979 0.86495 0.77976 0.79904 0.83137 1.20525 1.21276 1.19899 1.60059 1.12792 1.51211 0.98446 1.18654 0.93101 0.90276 0.92270 1.21591 1.00266 0.96600 0.98091 1.20879 0.98142 0.99349 0.95024 1.20917 1.00534 0.95100 0.99663 1.20953 1.00640 0.95213 0.97109 1.21003 0.97622 0.99594 0.94044 0.91941 0.93148 0.92853 0.90793 0.91812 0.85638 0.92466 0.87257 0.92777 0.87220 0.87159 0.87106 0.86793 0.86164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.11 8.88 37.16 0.33 -1.78 16 2 C 0.05 0.86 2.32 -67.66 -0.16 0.70 16 3 H 0.03 0.56 7.44 -51.93 -0.39 0.18 16 4 C 0.07 1.19 6.00 -3.76 -0.02 1.17 16 5 N -0.70 -13.84 6.91 -113.63 -0.79 -14.63 16 6 C 0.06 1.50 5.76 -3.77 -0.02 1.48 16 7 C 0.19 4.72 1.66 -68.81 -0.11 4.60 16 8 H 0.00 0.05 7.25 -51.93 -0.38 -0.32 16 9 C -0.50 -13.49 8.06 -34.44 -0.28 -13.77 16 10 H 0.06 1.77 6.97 -52.48 -0.37 1.40 16 11 C 0.06 1.69 5.30 -17.82 -0.09 1.59 16 12 N -0.89 -24.81 11.34 55.43 0.63 -24.18 16 13 Si 0.90 21.44 29.54 -169.99 -5.02 16.42 16 14 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 15 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 16 H -0.27 -6.59 7.11 56.52 0.40 -6.18 16 17 N -0.50 -10.59 4.33 -157.25 -0.68 -11.28 16 18 C 0.15 3.07 2.07 -83.79 -0.17 2.90 16 19 C -0.15 -2.85 8.64 -39.38 -0.34 -3.19 16 20 C -0.12 -1.97 10.04 -39.61 -0.40 -2.37 16 21 C -0.14 -2.29 10.04 -39.55 -0.40 -2.69 16 22 C -0.12 -1.97 10.04 -39.61 -0.40 -2.37 16 23 C -0.10 -1.94 9.59 -39.38 -0.38 -2.32 16 24 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 25 H 0.05 0.79 7.37 -51.93 -0.38 0.40 16 26 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.07 1.33 8.14 -51.93 -0.42 0.90 16 28 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 29 H 0.33 6.30 8.89 -39.29 -0.35 5.95 16 30 H 0.06 1.41 8.14 -51.93 -0.42 0.99 16 31 H 0.11 2.86 6.12 -51.93 -0.32 2.54 16 32 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 33 H 0.11 2.21 7.06 -52.48 -0.37 1.84 16 34 H 0.11 1.61 8.06 -52.48 -0.42 1.19 16 35 H 0.11 1.44 8.06 -52.48 -0.42 1.02 16 36 H 0.11 1.54 8.06 -52.49 -0.42 1.12 16 37 H 0.12 2.19 8.06 -52.49 -0.42 1.76 16 LS Contribution 294.17 15.07 4.43 4.43 Total: -1.00 -27.80 294.17 -9.36 -37.16 By element: Atomic # 1 Polarization: 13.62 SS G_CDS: -5.49 Total: 8.13 kcal Atomic # 6 Polarization: -13.61 SS G_CDS: -2.44 Total: -16.05 kcal Atomic # 7 Polarization: -49.25 SS G_CDS: -0.84 Total: -50.09 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -27.80 -9.36 -37.16 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000221059814.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.165 kcal (2) G-P(sol) polarization free energy of solvation -27.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.155 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds