Wall clock time and date at job start Mon Mar 30 2020 04:05:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09006 * 109.48684 * 2 1 4 4 C 1.53047 * 109.48853 * 239.96000 * 2 1 3 5 5 N 1.46964 * 109.36265 * 181.60676 * 4 2 1 6 6 C 1.46951 * 110.87866 * 59.32287 * 5 4 2 7 7 C 1.53056 * 109.36457 * 300.67680 * 6 5 4 8 8 H 1.09002 * 109.48880 * 298.41613 * 7 6 5 9 9 C 1.50694 * 109.48854 * 178.37055 * 7 6 5 10 10 H 1.08008 * 119.99919 * 239.99565 * 9 7 6 11 11 C 1.37879 * 120.00399 * 60.00339 * 9 7 6 12 12 N 1.31520 * 119.99346 * 359.97438 * 11 9 7 13 13 Si 1.86803 * 120.00368 * 179.97438 * 11 9 7 14 14 H 1.48499 * 109.46853 * 89.99622 * 13 11 9 15 15 H 1.48504 * 109.46956 * 209.99793 * 13 11 9 16 16 H 1.48494 * 109.46805 * 329.99802 * 13 11 9 17 17 N 1.46951 * 109.50664 * 120.05256 * 2 1 3 18 18 C 1.39669 * 111.00407 * 303.16984 * 17 2 1 19 19 C 1.38910 * 120.07323 * 296.29667 * 18 17 2 20 20 C 1.38109 * 119.92260 * 179.76542 * 19 18 17 21 21 C 1.38280 * 120.07435 * 0.51602 * 20 19 18 22 22 C 1.38289 * 120.15178 * 359.74115 * 21 20 19 23 23 C 1.38101 * 120.07090 * 359.97438 * 22 21 20 24 24 H 1.09002 * 109.47209 * 185.81928 * 1 2 3 25 25 H 1.09001 * 109.47118 * 305.81307 * 1 2 3 26 26 H 1.08996 * 109.47078 * 65.81833 * 1 2 3 27 27 H 1.09003 * 109.48799 * 301.57257 * 4 2 1 28 28 H 1.09004 * 109.48986 * 61.64176 * 4 2 1 29 29 H 1.00895 * 110.99799 * 295.45306 * 5 4 2 30 30 H 1.08996 * 109.49317 * 60.64495 * 6 5 4 31 31 H 1.09002 * 109.48977 * 180.69228 * 6 5 4 32 32 H 0.97004 * 119.99694 * 180.02562 * 12 11 9 33 33 H 1.08003 * 120.04058 * 0.02562 * 19 18 17 34 34 H 1.08005 * 119.96098 * 180.25263 * 20 19 18 35 35 H 1.08006 * 119.92363 * 179.71875 * 21 20 19 36 36 H 1.08001 * 119.96202 * 179.97438 * 22 21 20 37 37 H 1.08000 * 120.03291 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8936 1.0276 0.0000 4 6 2.0406 -0.7223 -1.2490 5 7 3.5097 -0.7544 -1.2269 6 6 4.0004 -1.4482 -0.0280 7 6 3.4898 -0.7259 1.2211 8 1 3.8760 0.2933 1.2352 9 6 3.9582 -1.4581 2.4520 10 1 3.2371 -1.8581 3.1496 11 6 5.3073 -1.6175 2.6880 12 7 6.1853 -1.1307 1.8383 13 14 5.8879 -2.5245 4.2143 14 1 6.0234 -3.9714 3.9086 15 1 7.2033 -1.9834 4.6412 16 1 4.8986 -2.3398 5.3061 17 7 2.0207 -0.6937 1.1989 18 6 1.5154 -0.1046 2.3602 19 6 1.8495 1.2057 2.6780 20 6 1.3442 1.7868 3.8245 21 6 0.5152 1.0622 4.6611 22 6 0.1850 -0.2443 4.3505 23 6 0.6820 -0.8294 3.2026 24 1 -0.3634 -1.0224 0.1042 25 1 -0.3633 0.6013 0.8334 26 1 -0.3633 0.4209 -0.9375 27 1 1.6547 -1.7416 -1.2629 28 1 1.7018 -0.1926 -2.1394 29 1 3.8927 0.1771 -1.2879 30 1 3.6368 -2.4757 -0.0280 31 1 5.0904 -1.4481 -0.0283 32 1 7.1344 -1.2431 2.0041 33 1 2.5002 1.7709 2.0272 34 1 1.6002 2.8069 4.0701 35 1 0.1251 1.5175 5.5595 36 1 -0.4624 -0.8075 5.0063 37 1 0.4240 -1.8499 2.9607 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000221059814.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:05:21 Heat of formation + Delta-G solvation = 20.918177 kcal Electronic energy + Delta-G solvation = -18649.362100 eV Core-core repulsion = 16004.589312 eV Total energy + Delta-G solvation = -2644.772788 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.24892 -38.90037 -35.31587 -35.14226 -32.83082 -31.72168 -30.31783 -28.22646 -27.09123 -25.00829 -23.49525 -22.75507 -22.37480 -20.70500 -18.50377 -18.00761 -17.04351 -16.71136 -16.26553 -15.86506 -15.62085 -15.50340 -15.04447 -14.62130 -14.18650 -13.82808 -13.65746 -13.38170 -13.02754 -13.00931 -12.84312 -12.55173 -12.42512 -12.19713 -12.11970 -12.01345 -11.90650 -11.70940 -11.28302 -10.62340 -9.73956 -9.35652 -9.34202 -9.02141 -8.16838 -6.25312 0.56225 0.60663 1.37774 1.38725 1.48590 2.38031 2.96425 3.08999 3.13318 3.59532 4.00633 4.10206 4.18858 4.23416 4.31275 4.35075 4.54856 4.64658 4.70728 4.75216 4.80123 4.91085 4.99054 5.02090 5.10451 5.17350 5.23193 5.34407 5.56847 5.62507 5.66237 5.67971 5.84961 5.97965 6.11574 6.21461 6.52507 6.56136 6.71975 6.92683 7.41749 8.89176 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.016261 B = 0.011940 C = 0.007760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1721.503041 B = 2344.434675 C = 3607.414060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.046 3.954 3 H 0.019 0.981 4 C 0.070 3.930 5 N -0.694 5.694 6 C 0.079 3.921 7 C 0.206 3.794 8 H -0.036 1.036 9 C -0.512 4.512 10 H 0.051 0.949 11 C 0.018 3.982 12 N -0.916 5.916 13 Si 0.954 3.046 14 H -0.273 1.273 15 H -0.283 1.283 16 H -0.274 1.274 17 N -0.506 5.506 18 C 0.126 3.874 19 C -0.169 4.169 20 C -0.118 4.118 21 C -0.138 4.138 22 C -0.115 4.115 23 C -0.121 4.121 24 H 0.061 0.939 25 H 0.043 0.957 26 H 0.083 0.917 27 H 0.071 0.929 28 H 0.100 0.900 29 H 0.332 0.668 30 H 0.041 0.959 31 H 0.080 0.920 32 H 0.263 0.737 33 H 0.089 0.911 34 H 0.134 0.866 35 H 0.150 0.850 36 H 0.148 0.852 37 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.446 3.918 0.447 12.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.063 4.063 3 H 0.037 0.963 4 C -0.060 4.060 5 N -0.320 5.320 6 C -0.051 4.051 7 C 0.099 3.901 8 H -0.018 1.018 9 C -0.551 4.551 10 H 0.069 0.931 11 C -0.181 4.181 12 N -0.556 5.556 13 Si 0.780 3.220 14 H -0.199 1.199 15 H -0.208 1.208 16 H -0.199 1.199 17 N -0.229 5.229 18 C 0.032 3.968 19 C -0.189 4.189 20 C -0.137 4.137 21 C -0.155 4.155 22 C -0.133 4.133 23 C -0.140 4.140 24 H 0.080 0.920 25 H 0.062 0.938 26 H 0.102 0.898 27 H 0.089 0.911 28 H 0.118 0.882 29 H 0.148 0.852 30 H 0.060 0.940 31 H 0.099 0.901 32 H 0.072 0.928 33 H 0.108 0.892 34 H 0.152 0.848 35 H 0.167 0.833 36 H 0.166 0.834 37 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -11.348 2.857 -0.066 11.702 hybrid contribution 1.114 1.068 1.430 2.104 sum -10.234 3.926 1.363 11.046 Atomic orbital electron populations 1.21678 0.92394 1.02320 1.02109 1.22504 0.97406 0.94586 0.91815 0.96327 1.22192 0.87456 1.00894 0.95462 1.60894 1.07903 1.22530 1.40707 1.21962 1.00800 0.96069 0.86265 1.19673 0.81419 0.93083 0.95941 1.01820 1.21218 0.91648 1.35483 1.06760 0.93058 1.25596 0.96789 0.96400 0.99327 1.69963 1.01743 1.46665 1.37231 0.85610 0.77432 0.79013 0.79967 1.19860 1.20807 1.19905 1.60019 1.10462 1.52267 1.00181 1.18811 0.94466 0.90865 0.92631 1.21583 1.01279 0.96671 0.99402 1.21211 0.97762 1.00608 0.94090 1.21367 0.99139 0.94759 1.00282 1.21362 1.00009 0.95680 0.96289 1.21150 0.98215 0.99653 0.94951 0.91973 0.93778 0.89849 0.91093 0.88228 0.85230 0.94009 0.90136 0.92785 0.89238 0.84832 0.83262 0.83408 0.86335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.64 8.88 71.98 0.64 -3.00 16 2 C 0.05 1.63 2.32 44.92 0.10 1.74 16 3 H 0.02 0.71 7.44 -2.38 -0.02 0.70 16 4 C 0.07 2.37 6.00 86.31 0.52 2.88 16 5 N -0.69 -27.83 6.91 -513.42 -3.55 -31.38 16 6 C 0.08 3.86 5.76 86.31 0.50 4.36 16 7 C 0.21 10.44 1.66 44.17 0.07 10.51 16 8 H -0.04 -2.03 7.25 -2.39 -0.02 -2.05 16 9 C -0.51 -28.45 8.06 25.60 0.21 -28.25 16 10 H 0.05 2.92 6.97 -2.91 -0.02 2.90 16 11 C 0.02 1.00 5.30 84.65 0.45 1.45 16 12 N -0.92 -52.34 11.34 21.45 0.24 -52.09 16 13 Si 0.95 44.41 29.54 68.60 2.03 46.43 16 14 H -0.27 -12.36 7.11 99.48 0.71 -11.66 16 15 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 16 H -0.27 -12.66 7.11 99.48 0.71 -11.95 16 17 N -0.51 -21.83 4.33 -651.41 -2.82 -24.65 16 18 C 0.13 5.17 2.07 38.21 0.08 5.25 16 19 C -0.17 -6.73 8.64 22.40 0.19 -6.54 16 20 C -0.12 -3.86 10.04 22.25 0.22 -3.64 16 21 C -0.14 -3.93 10.04 22.29 0.22 -3.71 16 22 C -0.12 -3.45 10.04 22.25 0.22 -3.23 16 23 C -0.12 -4.43 9.59 22.40 0.21 -4.21 16 24 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 25 H 0.04 1.32 7.37 -2.39 -0.02 1.30 16 26 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 27 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 28 H 0.10 2.69 8.14 -2.38 -0.02 2.67 16 29 H 0.33 12.97 8.89 -89.70 -0.80 12.17 16 30 H 0.04 2.13 8.14 -2.39 -0.02 2.11 16 31 H 0.08 4.40 6.12 -2.39 -0.01 4.39 16 32 H 0.26 14.34 8.31 -92.71 -0.77 13.57 16 33 H 0.09 3.81 7.06 -2.91 -0.02 3.79 16 34 H 0.13 3.63 8.06 -2.91 -0.02 3.61 16 35 H 0.15 3.12 8.06 -2.91 -0.02 3.10 16 36 H 0.15 3.38 8.06 -2.91 -0.02 3.36 16 37 H 0.12 4.27 8.06 -2.91 -0.02 4.25 16 Total: -1.00 -61.70 294.17 -0.20 -61.90 By element: Atomic # 1 Polarization: 25.91 SS G_CDS: 0.25 Total: 26.17 kcal Atomic # 6 Polarization: -30.02 SS G_CDS: 3.65 Total: -26.38 kcal Atomic # 7 Polarization: -102.00 SS G_CDS: -6.13 Total: -108.12 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.43 kcal Total: -61.70 -0.20 -61.90 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000221059814.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.818 kcal (2) G-P(sol) polarization free energy of solvation -61.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.899 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds