Wall clock time and date at job start Mon Mar 30 2020 04:05:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09004 * 109.48974 * 2 1 4 4 C 1.53049 * 109.50813 * 120.05431 * 2 1 3 5 5 N 1.46953 * 109.36351 * 61.58018 * 4 2 1 6 6 C 1.46955 * 110.88277 * 59.32151 * 5 4 2 7 7 C 1.53049 * 109.36302 * 300.67878 * 6 5 4 8 8 H 1.08999 * 109.48744 * 298.43437 * 7 6 5 9 9 C 1.50702 * 109.48847 * 178.36780 * 7 6 5 10 10 H 1.07998 * 120.00209 * 240.11294 * 9 7 6 11 11 C 1.37878 * 119.99825 * 60.11102 * 9 7 6 12 12 N 1.31509 * 120.00067 * 359.97438 * 11 9 7 13 13 Si 1.86799 * 119.99937 * 180.02562 * 11 9 7 14 14 H 1.48498 * 109.47242 * 89.99618 * 13 11 9 15 15 H 1.48499 * 109.46963 * 209.99899 * 13 11 9 16 16 H 1.48502 * 109.46890 * 329.99640 * 13 11 9 17 17 N 1.46954 * 109.49212 * 239.95997 * 2 1 3 18 18 C 1.39676 * 111.00512 * 63.19645 * 17 2 1 19 19 C 1.38906 * 120.07379 * 72.32203 * 18 17 2 20 20 C 1.38103 * 119.92121 * 179.77200 * 19 18 17 21 21 C 1.38286 * 120.07994 * 0.51260 * 20 19 18 22 22 C 1.38289 * 120.14349 * 359.74522 * 21 20 19 23 23 C 1.38103 * 120.07656 * 359.97438 * 22 21 20 24 24 H 1.09008 * 109.47179 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47560 * 300.03946 * 1 2 3 26 26 H 1.09003 * 109.47099 * 60.04784 * 1 2 3 27 27 H 1.08999 * 109.48744 * 181.54564 * 4 2 1 28 28 H 1.08999 * 109.48793 * 301.58830 * 4 2 1 29 29 H 1.00902 * 110.99524 * 183.18674 * 5 4 2 30 30 H 1.08995 * 109.48625 * 60.64489 * 6 5 4 31 31 H 1.09003 * 109.48760 * 180.70889 * 6 5 4 32 32 H 0.97005 * 120.00432 * 180.02562 * 12 11 9 33 33 H 1.08002 * 120.03717 * 0.02562 * 19 18 17 34 34 H 1.08008 * 119.95902 * 180.25533 * 20 19 18 35 35 H 1.07993 * 119.92883 * 179.71960 * 21 20 19 36 36 H 1.08003 * 119.95738 * 180.02562 * 22 21 20 37 37 H 1.08000 * 120.03311 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8936 1.0276 0.0000 4 6 2.0410 -0.7225 1.2487 5 7 1.5818 -2.1182 1.2263 6 6 2.0721 -2.8118 0.0270 7 6 1.5610 -2.0893 -1.2216 8 1 0.4714 -2.1135 -1.2353 9 6 2.0950 -2.7747 -2.4530 10 1 2.7138 -2.2285 -3.1495 11 6 1.7937 -4.0990 -2.6903 12 7 1.0407 -4.7643 -1.8418 13 14 2.4562 -4.9487 -4.2162 14 1 3.7737 -5.5611 -3.9092 15 1 1.5065 -6.0066 -4.6454 16 1 2.6150 -3.9538 -5.3072 17 7 2.0203 -0.6935 -1.1992 18 6 1.6330 -0.0205 -2.3603 19 6 2.2344 1.1848 -2.6996 20 6 1.8524 1.8452 -3.8507 21 6 0.8651 1.3134 -4.6598 22 6 0.2606 0.1163 -4.3221 23 6 0.6419 -0.5523 -3.1754 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5144 0.8896 26 1 -0.3633 0.5131 -0.8904 27 1 3.1307 -0.6984 1.2623 28 1 1.6551 -0.2266 2.1393 29 1 1.8616 -2.6044 2.0650 30 1 3.1620 -2.8114 0.0269 31 1 1.7085 -3.8394 0.0271 32 1 0.8289 -5.6961 -2.0085 33 1 3.0027 1.6029 -2.0660 34 1 2.3225 2.7804 -4.1173 35 1 0.5651 1.8341 -5.5570 36 1 -0.5099 -0.2966 -4.9563 37 1 0.1690 -1.4869 -2.9121 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000221059878.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:05:23 Heat of formation + Delta-G solvation = 46.078578 kcal Electronic energy + Delta-G solvation = -18792.991699 eV Core-core repulsion = 16149.309947 eV Total energy + Delta-G solvation = -2643.681751 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.80087 -37.32808 -33.71039 -33.32293 -30.78771 -30.17650 -28.72927 -26.70768 -25.49250 -23.50288 -22.50103 -20.82309 -20.68802 -17.92529 -17.22272 -16.15473 -15.39922 -14.82775 -14.68975 -14.16587 -14.06251 -13.57402 -13.52098 -13.20834 -12.70682 -12.46584 -12.20074 -11.77804 -11.65999 -11.23548 -11.01554 -10.80457 -10.64617 -10.52430 -10.42067 -10.20840 -10.12806 -9.66308 -9.07961 -8.75174 -8.38969 -8.16053 -7.59772 -6.90689 -6.11168 -4.14142 2.11005 2.16792 3.27202 3.34082 3.39529 4.33698 4.48539 4.83979 5.01403 5.26192 5.45194 5.54794 5.60998 5.74443 5.79663 5.83466 6.06202 6.16016 6.18839 6.26477 6.31994 6.46429 6.54378 6.71035 6.75770 6.77970 6.91628 7.07507 7.10189 7.25713 7.38581 7.54614 7.63502 7.74032 7.86113 8.11690 8.14536 8.32902 8.49458 8.93028 9.49506 10.94944 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.016264 B = 0.012506 C = 0.007912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1721.202862 B = 2238.459060 C = 3538.225892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.091 3.909 3 H 0.071 0.929 4 C 0.066 3.934 5 N -0.693 5.693 6 C 0.065 3.935 7 C 0.218 3.782 8 H 0.026 0.974 9 C -0.505 4.505 10 H 0.063 0.937 11 C 0.064 3.936 12 N -0.889 5.889 13 Si 0.894 3.106 14 H -0.281 1.281 15 H -0.286 1.286 16 H -0.273 1.273 17 N -0.495 5.495 18 C 0.142 3.858 19 C -0.145 4.145 20 C -0.119 4.119 21 C -0.157 4.157 22 C -0.116 4.116 23 C -0.125 4.125 24 H 0.077 0.923 25 H 0.048 0.952 26 H 0.047 0.953 27 H 0.028 0.972 28 H 0.065 0.935 29 H 0.327 0.673 30 H 0.013 0.987 31 H 0.110 0.890 32 H 0.263 0.737 33 H 0.112 0.888 34 H 0.109 0.891 35 H 0.107 0.893 36 H 0.110 0.890 37 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.427 8.625 1.777 8.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.016 4.016 3 H 0.089 0.911 4 C -0.064 4.064 5 N -0.324 5.324 6 C -0.064 4.064 7 C 0.112 3.888 8 H 0.044 0.956 9 C -0.544 4.544 10 H 0.081 0.919 11 C -0.139 4.139 12 N -0.527 5.527 13 Si 0.722 3.278 14 H -0.207 1.207 15 H -0.212 1.212 16 H -0.197 1.197 17 N -0.212 5.212 18 C 0.044 3.956 19 C -0.165 4.165 20 C -0.138 4.138 21 C -0.176 4.176 22 C -0.135 4.135 23 C -0.145 4.145 24 H 0.096 0.904 25 H 0.067 0.933 26 H 0.066 0.934 27 H 0.046 0.954 28 H 0.083 0.917 29 H 0.143 0.857 30 H 0.031 0.969 31 H 0.128 0.872 32 H 0.073 0.927 33 H 0.131 0.869 34 H 0.128 0.872 35 H 0.125 0.875 36 H 0.128 0.872 37 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -0.583 8.547 1.617 8.718 hybrid contribution 0.691 -0.734 -0.693 1.223 sum 0.108 7.813 0.924 7.868 Atomic orbital electron populations 1.22327 0.96832 1.03563 1.00426 1.21684 0.93621 0.96511 0.89806 0.91130 1.21904 0.97014 0.91011 0.96476 1.60711 1.63770 1.01972 1.05898 1.22343 0.95859 1.00514 0.87683 1.19455 0.95075 0.80516 0.93760 0.95628 1.21123 1.31624 0.95688 1.05924 0.91852 1.24889 0.94983 0.97188 0.96797 1.69864 1.36954 1.10128 1.35803 0.86531 0.78712 0.79260 0.83275 1.20666 1.21190 1.19736 1.59726 1.57084 1.04993 0.99374 1.18807 0.91639 0.92041 0.93085 1.20752 1.01256 0.96339 0.98125 1.20771 0.98242 0.99526 0.95238 1.20866 0.99310 0.97272 1.00143 1.20985 1.00095 0.95222 0.97214 1.21834 0.96074 1.00780 0.95799 0.90371 0.93297 0.93433 0.95422 0.91670 0.85745 0.96910 0.87237 0.92728 0.86946 0.87245 0.87495 0.87164 0.84067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.11 8.36 37.15 0.31 -2.80 16 2 C 0.09 1.67 2.88 -67.66 -0.20 1.47 16 3 H 0.07 1.19 7.76 -51.93 -0.40 0.79 16 4 C 0.07 1.15 6.15 -3.77 -0.02 1.12 16 5 N -0.69 -13.35 6.22 -113.64 -0.71 -14.06 16 6 C 0.06 1.50 5.76 -3.77 -0.02 1.48 16 7 C 0.22 5.25 1.02 -68.80 -0.07 5.18 16 8 H 0.03 0.69 5.06 -51.93 -0.26 0.43 16 9 C -0.50 -13.36 6.34 -34.44 -0.22 -13.58 16 10 H 0.06 1.77 7.17 -52.49 -0.38 1.39 16 11 C 0.06 1.69 5.30 -17.82 -0.09 1.59 16 12 N -0.89 -24.12 11.34 55.43 0.63 -23.49 16 13 Si 0.89 21.07 29.54 -169.99 -5.02 16.05 16 14 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 15 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 16 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 17 N -0.50 -10.68 4.50 -157.25 -0.71 -11.39 16 18 C 0.14 2.96 3.40 -83.79 -0.29 2.67 16 19 C -0.14 -2.67 9.45 -39.38 -0.37 -3.04 16 20 C -0.12 -1.97 10.04 -39.61 -0.40 -2.36 16 21 C -0.16 -2.61 10.04 -39.54 -0.40 -3.01 16 22 C -0.12 -2.15 10.04 -39.61 -0.40 -2.55 16 23 C -0.12 -2.64 7.33 -39.38 -0.29 -2.93 16 24 H 0.08 1.61 5.95 -51.92 -0.31 1.30 16 25 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.05 0.86 6.96 -51.93 -0.36 0.50 16 27 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 29 H 0.33 5.52 8.90 -39.29 -0.35 5.17 16 30 H 0.01 0.31 8.14 -51.93 -0.42 -0.12 16 31 H 0.11 2.81 6.13 -51.93 -0.32 2.49 16 32 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 33 H 0.11 1.92 8.06 -52.49 -0.42 1.49 16 34 H 0.11 1.48 8.06 -52.48 -0.42 1.06 16 35 H 0.11 1.48 8.06 -52.49 -0.42 1.05 16 36 H 0.11 1.81 8.06 -52.48 -0.42 1.39 16 37 H 0.14 3.35 5.38 -52.49 -0.28 3.07 16 LS Contribution 285.45 15.07 4.30 4.30 Total: -1.00 -27.28 285.45 -9.14 -36.42 By element: Atomic # 1 Polarization: 14.10 SS G_CDS: -5.18 Total: 8.92 kcal Atomic # 6 Polarization: -14.30 SS G_CDS: -2.45 Total: -16.75 kcal Atomic # 7 Polarization: -48.16 SS G_CDS: -0.79 Total: -48.94 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -27.28 -9.14 -36.42 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000221059878.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.499 kcal (2) G-P(sol) polarization free energy of solvation -27.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.420 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds