Wall clock time and date at job start Mon Mar 30 2020 04:05:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09004 * 109.48974 * 2 1 4 4 C 1.53049 * 109.50813 * 120.05431 * 2 1 3 5 5 N 1.46953 * 109.36351 * 61.58018 * 4 2 1 6 6 C 1.46955 * 110.88277 * 59.32151 * 5 4 2 7 7 C 1.53049 * 109.36302 * 300.67878 * 6 5 4 8 8 H 1.08999 * 109.48744 * 298.43437 * 7 6 5 9 9 C 1.50702 * 109.48847 * 178.36780 * 7 6 5 10 10 H 1.07998 * 120.00209 * 240.11294 * 9 7 6 11 11 C 1.37878 * 119.99825 * 60.11102 * 9 7 6 12 12 N 1.31509 * 120.00067 * 359.97438 * 11 9 7 13 13 Si 1.86799 * 119.99937 * 180.02562 * 11 9 7 14 14 H 1.48498 * 109.47242 * 89.99618 * 13 11 9 15 15 H 1.48499 * 109.46963 * 209.99899 * 13 11 9 16 16 H 1.48502 * 109.46890 * 329.99640 * 13 11 9 17 17 N 1.46954 * 109.49212 * 239.95997 * 2 1 3 18 18 C 1.39676 * 111.00512 * 63.19645 * 17 2 1 19 19 C 1.38906 * 120.07379 * 72.32203 * 18 17 2 20 20 C 1.38103 * 119.92121 * 179.77200 * 19 18 17 21 21 C 1.38286 * 120.07994 * 0.51260 * 20 19 18 22 22 C 1.38289 * 120.14349 * 359.74522 * 21 20 19 23 23 C 1.38103 * 120.07656 * 359.97438 * 22 21 20 24 24 H 1.09008 * 109.47179 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47560 * 300.03946 * 1 2 3 26 26 H 1.09003 * 109.47099 * 60.04784 * 1 2 3 27 27 H 1.08999 * 109.48744 * 181.54564 * 4 2 1 28 28 H 1.08999 * 109.48793 * 301.58830 * 4 2 1 29 29 H 1.00902 * 110.99524 * 183.18674 * 5 4 2 30 30 H 1.08995 * 109.48625 * 60.64489 * 6 5 4 31 31 H 1.09003 * 109.48760 * 180.70889 * 6 5 4 32 32 H 0.97005 * 120.00432 * 180.02562 * 12 11 9 33 33 H 1.08002 * 120.03717 * 0.02562 * 19 18 17 34 34 H 1.08008 * 119.95902 * 180.25533 * 20 19 18 35 35 H 1.07993 * 119.92883 * 179.71960 * 21 20 19 36 36 H 1.08003 * 119.95738 * 180.02562 * 22 21 20 37 37 H 1.08000 * 120.03311 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8936 1.0276 0.0000 4 6 2.0410 -0.7225 1.2487 5 7 1.5818 -2.1182 1.2263 6 6 2.0721 -2.8118 0.0270 7 6 1.5610 -2.0893 -1.2216 8 1 0.4714 -2.1135 -1.2353 9 6 2.0950 -2.7747 -2.4530 10 1 2.7138 -2.2285 -3.1495 11 6 1.7937 -4.0990 -2.6903 12 7 1.0407 -4.7643 -1.8418 13 14 2.4562 -4.9487 -4.2162 14 1 3.7737 -5.5611 -3.9092 15 1 1.5065 -6.0066 -4.6454 16 1 2.6150 -3.9538 -5.3072 17 7 2.0203 -0.6935 -1.1992 18 6 1.6330 -0.0205 -2.3603 19 6 2.2344 1.1848 -2.6996 20 6 1.8524 1.8452 -3.8507 21 6 0.8651 1.3134 -4.6598 22 6 0.2606 0.1163 -4.3221 23 6 0.6419 -0.5523 -3.1754 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5144 0.8896 26 1 -0.3633 0.5131 -0.8904 27 1 3.1307 -0.6984 1.2623 28 1 1.6551 -0.2266 2.1393 29 1 1.8616 -2.6044 2.0650 30 1 3.1620 -2.8114 0.0269 31 1 1.7085 -3.8394 0.0271 32 1 0.8289 -5.6961 -2.0085 33 1 3.0027 1.6029 -2.0660 34 1 2.3225 2.7804 -4.1173 35 1 0.5651 1.8341 -5.5570 36 1 -0.5099 -0.2966 -4.9563 37 1 0.1690 -1.4869 -2.9121 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000221059878.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:05:22 Heat of formation + Delta-G solvation = 28.281941 kcal Electronic energy + Delta-G solvation = -18793.763419 eV Core-core repulsion = 16149.309947 eV Total energy + Delta-G solvation = -2644.453472 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.36934 -38.81327 -35.34387 -35.16816 -32.50312 -31.61787 -30.31622 -28.31516 -27.26585 -25.16076 -24.13832 -22.31471 -22.24667 -19.55292 -18.96263 -17.90222 -17.05470 -16.53926 -16.18916 -15.85895 -15.66881 -15.19814 -15.04873 -14.68506 -14.25427 -14.19534 -13.71062 -13.39211 -13.16977 -12.93274 -12.83831 -12.46750 -12.19902 -12.19181 -12.06238 -11.94536 -11.79748 -11.33521 -10.96488 -10.65109 -10.05646 -9.62125 -9.21011 -8.50347 -8.14694 -6.23377 0.67458 0.73016 1.37033 1.38831 1.48748 2.38563 3.01833 3.12437 3.27922 3.56242 4.00411 4.19538 4.28412 4.31871 4.38861 4.48042 4.67051 4.69731 4.72706 4.75537 4.80324 4.90436 5.00857 5.04818 5.12531 5.29399 5.33228 5.44287 5.62456 5.65745 5.70808 5.82798 5.87425 6.06076 6.19309 6.29923 6.54106 6.65354 6.79202 6.92645 7.42574 8.90170 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.016264 B = 0.012506 C = 0.007912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1721.202862 B = 2238.459060 C = 3538.225892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.083 3.917 3 H 0.094 0.906 4 C 0.067 3.933 5 N -0.694 5.694 6 C 0.078 3.922 7 C 0.231 3.769 8 H -0.007 1.007 9 C -0.510 4.510 10 H 0.044 0.956 11 C 0.022 3.978 12 N -0.911 5.911 13 Si 0.949 3.051 14 H -0.276 1.276 15 H -0.280 1.280 16 H -0.276 1.276 17 N -0.504 5.504 18 C 0.118 3.882 19 C -0.150 4.150 20 C -0.109 4.109 21 C -0.151 4.151 22 C -0.125 4.125 23 C -0.151 4.151 24 H 0.044 0.956 25 H 0.077 0.923 26 H 0.038 0.962 27 H 0.028 0.972 28 H 0.102 0.898 29 H 0.342 0.658 30 H -0.004 1.004 31 H 0.081 0.919 32 H 0.263 0.737 33 H 0.128 0.872 34 H 0.150 0.850 35 H 0.144 0.856 36 H 0.123 0.877 37 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.223 11.020 1.425 11.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.023 4.023 3 H 0.112 0.888 4 C -0.062 4.062 5 N -0.325 5.325 6 C -0.052 4.052 7 C 0.125 3.875 8 H 0.011 0.989 9 C -0.549 4.549 10 H 0.062 0.938 11 C -0.177 4.177 12 N -0.550 5.550 13 Si 0.775 3.225 14 H -0.202 1.202 15 H -0.206 1.206 16 H -0.201 1.201 17 N -0.221 5.221 18 C 0.021 3.979 19 C -0.170 4.170 20 C -0.127 4.127 21 C -0.169 4.169 22 C -0.144 4.144 23 C -0.172 4.172 24 H 0.063 0.937 25 H 0.096 0.904 26 H 0.057 0.943 27 H 0.046 0.954 28 H 0.121 0.879 29 H 0.159 0.841 30 H 0.014 0.986 31 H 0.099 0.901 32 H 0.072 0.928 33 H 0.146 0.854 34 H 0.168 0.832 35 H 0.162 0.838 36 H 0.141 0.859 37 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 0.067 10.955 1.279 11.030 hybrid contribution 0.452 -1.366 -0.607 1.562 sum 0.520 9.589 0.672 9.627 Atomic orbital electron populations 1.22172 0.96703 1.01619 1.01349 1.21917 0.93774 0.97508 0.89086 0.88783 1.22029 0.97161 0.89565 0.97482 1.60595 1.63718 1.03113 1.05066 1.21950 0.94382 0.99459 0.89366 1.19073 0.92876 0.82414 0.93169 0.98907 1.21195 1.31137 0.95917 1.06620 0.93805 1.25510 0.95342 0.97772 0.99122 1.69974 1.37839 1.10226 1.37011 0.85692 0.78300 0.78222 0.80308 1.20208 1.20564 1.20061 1.59748 1.57335 1.03964 1.01003 1.19006 0.92465 0.93339 0.93055 1.20992 1.01364 0.95428 0.99259 1.21237 0.97328 1.00372 0.93790 1.21274 0.98380 0.96165 1.01093 1.21219 1.00606 0.96095 0.96430 1.21594 0.97542 1.00257 0.97827 0.93701 0.90421 0.94286 0.95388 0.87945 0.84057 0.98614 0.90091 0.92752 0.85433 0.83243 0.83834 0.85930 0.88080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.69 8.36 71.98 0.60 -5.09 16 2 C 0.08 2.97 2.88 44.92 0.13 3.10 16 3 H 0.09 2.93 7.76 -2.38 -0.02 2.91 16 4 C 0.07 2.21 6.15 86.31 0.53 2.74 16 5 N -0.69 -26.67 6.22 -513.46 -3.19 -29.87 16 6 C 0.08 3.77 5.76 86.31 0.50 4.27 16 7 C 0.23 11.67 1.02 44.17 0.05 11.71 16 8 H -0.01 -0.37 5.06 -2.39 -0.01 -0.38 16 9 C -0.51 -28.18 6.34 25.60 0.16 -28.02 16 10 H 0.04 2.54 7.17 -2.91 -0.02 2.52 16 11 C 0.02 1.22 5.30 84.66 0.45 1.67 16 12 N -0.91 -51.52 11.34 21.45 0.24 -51.28 16 13 Si 0.95 44.32 29.54 68.60 2.03 46.35 16 14 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 15 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 16 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 17 N -0.50 -21.97 4.50 -651.41 -2.93 -24.91 16 18 C 0.12 4.94 3.40 38.21 0.13 5.07 16 19 C -0.15 -5.23 9.45 22.40 0.21 -5.02 16 20 C -0.11 -3.19 10.04 22.25 0.22 -2.97 16 21 C -0.15 -4.53 10.04 22.29 0.22 -4.30 16 22 C -0.12 -4.54 10.04 22.25 0.22 -4.31 16 23 C -0.15 -6.63 7.33 22.40 0.16 -6.46 16 24 H 0.04 1.89 5.95 -2.38 -0.01 1.88 16 25 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 26 H 0.04 1.42 6.96 -2.39 -0.02 1.40 16 27 H 0.03 0.93 8.14 -2.39 -0.02 0.91 16 28 H 0.10 2.64 8.14 -2.39 -0.02 2.62 16 29 H 0.34 11.33 8.90 -89.69 -0.80 10.53 16 30 H 0.00 -0.22 8.14 -2.39 -0.02 -0.24 16 31 H 0.08 4.36 6.13 -2.39 -0.01 4.34 16 32 H 0.26 14.21 8.31 -92.70 -0.77 13.44 16 33 H 0.13 3.97 8.06 -2.91 -0.02 3.95 16 34 H 0.15 3.21 8.06 -2.91 -0.02 3.18 16 35 H 0.14 3.27 8.06 -2.91 -0.02 3.25 16 36 H 0.12 3.99 8.06 -2.91 -0.02 3.97 16 37 H 0.10 5.18 5.38 -2.91 -0.02 5.17 16 Total: -1.00 -61.76 285.45 0.00 -61.76 By element: Atomic # 1 Polarization: 25.28 SS G_CDS: 0.27 Total: 25.55 kcal Atomic # 6 Polarization: -31.20 SS G_CDS: 3.59 Total: -27.60 kcal Atomic # 7 Polarization: -100.17 SS G_CDS: -5.88 Total: -106.05 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.35 kcal Total: -61.76 0.00 -61.76 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000221059878.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.039 kcal (2) G-P(sol) polarization free energy of solvation -61.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.757 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds