Wall clock time and date at job start Mon Mar 30 2020 04:05:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.49139 * 2 1 4 4 C 1.53047 * 109.50746 * 120.05197 * 2 1 3 5 5 N 1.46961 * 109.36586 * 178.37854 * 4 2 1 6 6 C 1.46960 * 110.89651 * 300.69516 * 5 4 2 7 7 C 1.53052 * 109.36797 * 59.28768 * 6 5 4 8 8 H 1.09000 * 109.48729 * 61.60699 * 7 6 5 9 9 C 1.50696 * 109.49018 * 181.65338 * 7 6 5 10 10 H 1.07996 * 119.99873 * 114.10796 * 9 7 6 11 11 C 1.37874 * 119.99967 * 294.10793 * 9 7 6 12 12 N 1.31521 * 120.00190 * 159.51816 * 11 9 7 13 13 Si 1.86798 * 120.00176 * 339.51811 * 11 9 7 14 14 H 1.48503 * 109.47535 * 180.02562 * 13 11 9 15 15 H 1.48503 * 109.47285 * 59.99905 * 13 11 9 16 16 H 1.48505 * 109.47083 * 299.99881 * 13 11 9 17 17 N 1.46958 * 109.48811 * 239.95671 * 2 1 3 18 18 C 1.39669 * 111.00035 * 56.82607 * 17 2 1 19 19 C 1.38913 * 120.08126 * 71.79217 * 18 17 2 20 20 C 1.38104 * 119.92849 * 179.76991 * 19 18 17 21 21 C 1.38293 * 120.07051 * 0.51012 * 20 19 18 22 22 C 1.38285 * 120.15094 * 359.74269 * 21 20 19 23 23 C 1.38100 * 120.07357 * 359.97438 * 22 21 20 24 24 H 1.08996 * 109.46971 * 176.32570 * 1 2 3 25 25 H 1.09005 * 109.47167 * 296.32933 * 1 2 3 26 26 H 1.09001 * 109.46918 * 56.32925 * 1 2 3 27 27 H 1.08995 * 109.49232 * 298.34955 * 4 2 1 28 28 H 1.09002 * 109.48528 * 58.41845 * 4 2 1 29 29 H 1.00896 * 111.00089 * 176.81344 * 5 4 2 30 30 H 1.09001 * 109.46890 * 299.32541 * 6 5 4 31 31 H 1.09005 * 109.50728 * 179.26655 * 6 5 4 32 32 H 0.96994 * 119.99702 * 0.17865 * 12 11 9 33 33 H 1.08001 * 120.03527 * 0.02562 * 19 18 17 34 34 H 1.07999 * 119.96083 * 180.25315 * 20 19 18 35 35 H 1.08000 * 119.91753 * 179.72098 * 21 20 19 36 36 H 1.08003 * 119.95733 * 180.02562 * 22 21 20 37 37 H 1.08000 * 120.03417 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0276 0.0000 4 6 2.0411 -0.7224 1.2487 5 7 3.5101 -0.7547 1.2261 6 6 4.0008 -1.4480 0.0268 7 6 3.4894 -0.7258 -1.2220 8 1 3.8753 0.2935 -1.2362 9 6 3.9573 -1.4578 -2.4532 10 1 3.2394 -1.9399 -3.1003 11 6 5.3018 -1.5121 -2.7537 12 7 5.7588 -2.4478 -3.5571 13 14 6.4743 -0.2567 -2.0199 14 1 7.8541 -0.5306 -2.4958 15 1 6.4339 -0.3485 -0.5382 16 1 6.0670 1.1074 -2.4427 17 7 2.0203 -0.6936 -1.1993 18 6 1.5146 -0.1042 -2.3602 19 6 1.9772 1.1408 -2.7673 20 6 1.4785 1.7185 -3.9183 21 6 0.5120 1.0636 -4.6596 22 6 0.0456 -0.1735 -4.2545 23 6 0.5442 -0.7595 -3.1076 24 1 -0.3633 -1.0255 -0.0659 25 1 -0.3634 0.4558 0.9211 26 1 -0.3633 0.5698 -0.8553 27 1 1.7026 -0.1930 2.1393 28 1 1.6552 -1.7418 1.2625 29 1 3.8754 -1.1804 2.0647 30 1 3.6375 -2.4756 0.0270 31 1 5.0909 -1.4473 0.0264 32 1 5.1496 -3.0981 -3.9402 33 1 2.7289 1.6545 -2.1865 34 1 1.8407 2.6846 -4.2374 35 1 0.1205 1.5197 -5.5569 36 1 -0.7090 -0.6823 -4.8360 37 1 0.1797 -1.7259 -2.7920 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000221059985.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:05:26 Heat of formation + Delta-G solvation = 42.089460 kcal Electronic energy + Delta-G solvation = -18696.948603 eV Core-core repulsion = 16053.093870 eV Total energy + Delta-G solvation = -2643.854733 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.74114 -37.44183 -33.88796 -33.36992 -31.42564 -30.33421 -29.06437 -26.91114 -25.24933 -23.34921 -22.06115 -20.92116 -20.80678 -18.71046 -17.47053 -16.73741 -15.66259 -15.05537 -14.78273 -14.46505 -14.21348 -13.72080 -13.49400 -13.15377 -12.89528 -12.65047 -12.23604 -11.95765 -11.76268 -11.52394 -11.30750 -11.04499 -10.84031 -10.61876 -10.56690 -10.23405 -10.04927 -9.78222 -8.92699 -8.34470 -8.27296 -8.06511 -7.91532 -7.46412 -6.49753 -4.06420 1.95947 1.99936 3.38622 3.43634 3.60077 4.36393 4.46646 4.54736 4.75921 5.22954 5.29045 5.44344 5.48818 5.56353 5.61418 5.64673 5.87827 5.95786 5.99360 6.03620 6.11992 6.24495 6.33894 6.39284 6.46512 6.49791 6.61276 6.74352 6.91311 7.01567 7.06407 7.27734 7.38516 7.50821 7.72349 7.86452 8.14283 8.35279 8.42810 8.98476 9.60186 10.90966 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.017433 B = 0.011992 C = 0.008392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1605.780900 B = 2334.414462 C = 3335.895256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.084 3.916 3 H 0.043 0.957 4 C 0.070 3.930 5 N -0.701 5.701 6 C 0.056 3.944 7 C 0.205 3.795 8 H 0.003 0.997 9 C -0.591 4.591 10 H 0.065 0.935 11 C 0.037 3.963 12 N -0.898 5.898 13 Si 1.036 2.964 14 H -0.285 1.285 15 H -0.272 1.272 16 H -0.284 1.284 17 N -0.498 5.498 18 C 0.152 3.848 19 C -0.141 4.141 20 C -0.114 4.114 21 C -0.143 4.143 22 C -0.120 4.120 23 C -0.107 4.107 24 H 0.060 0.940 25 H 0.054 0.946 26 H 0.055 0.945 27 H 0.068 0.932 28 H 0.033 0.967 29 H 0.330 0.670 30 H 0.032 0.968 31 H 0.076 0.924 32 H 0.269 0.731 33 H 0.113 0.887 34 H 0.112 0.888 35 H 0.111 0.889 36 H 0.114 0.886 37 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.611 5.862 5.419 12.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.023 4.023 3 H 0.061 0.939 4 C -0.060 4.060 5 N -0.331 5.331 6 C -0.073 4.073 7 C 0.099 3.901 8 H 0.020 0.980 9 C -0.630 4.630 10 H 0.083 0.917 11 C -0.170 4.170 12 N -0.531 5.531 13 Si 0.864 3.136 14 H -0.211 1.211 15 H -0.198 1.198 16 H -0.211 1.211 17 N -0.220 5.220 18 C 0.058 3.942 19 C -0.162 4.162 20 C -0.132 4.132 21 C -0.161 4.161 22 C -0.139 4.139 23 C -0.126 4.126 24 H 0.079 0.921 25 H 0.073 0.927 26 H 0.074 0.926 27 H 0.086 0.914 28 H 0.052 0.948 29 H 0.147 0.853 30 H 0.051 0.949 31 H 0.094 0.906 32 H 0.079 0.921 33 H 0.131 0.869 34 H 0.130 0.870 35 H 0.130 0.870 36 H 0.132 0.868 37 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -8.096 6.431 5.228 11.586 hybrid contribution -1.351 -0.671 0.032 1.509 sum -9.446 5.760 5.261 12.251 Atomic orbital electron populations 1.21822 0.94819 1.02247 1.01175 1.21655 0.94470 0.95886 0.90332 0.93935 1.21912 0.88696 0.98789 0.96631 1.60681 1.07686 1.59021 1.05682 1.22692 0.99757 0.95958 0.88928 1.19644 0.81173 0.94867 0.94443 0.97951 1.21862 0.94478 1.37841 1.08787 0.91686 1.25631 0.96883 0.98018 0.96462 1.70856 1.37801 1.13109 1.31356 0.84153 0.76386 0.76326 0.76729 1.21076 1.19845 1.21076 1.59909 1.11984 1.51248 0.98886 1.18544 0.93111 0.90353 0.92241 1.21604 1.00174 0.96478 0.97908 1.20896 0.97336 0.99691 0.95309 1.20924 0.99052 0.96123 0.99997 1.20927 1.00453 0.95720 0.96769 1.20955 0.97478 0.99399 0.94741 0.92059 0.92692 0.92550 0.91386 0.94844 0.85307 0.94928 0.90577 0.92078 0.86894 0.87007 0.87044 0.86806 0.86406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.10 8.78 37.16 0.33 -1.78 16 2 C 0.08 1.50 2.40 -67.66 -0.16 1.34 16 3 H 0.04 0.80 7.91 -51.93 -0.41 0.39 16 4 C 0.07 1.15 6.00 -3.77 -0.02 1.13 16 5 N -0.70 -12.87 6.90 -113.63 -0.78 -13.65 16 6 C 0.06 1.23 5.71 -3.76 -0.02 1.21 16 7 C 0.21 4.93 1.15 -68.81 -0.08 4.85 16 8 H 0.00 0.08 5.47 -51.93 -0.28 -0.21 16 9 C -0.59 -16.48 8.16 -34.44 -0.28 -16.76 16 10 H 0.06 2.01 7.67 -52.49 -0.40 1.61 16 11 C 0.04 1.04 5.31 -17.82 -0.09 0.95 16 12 N -0.90 -27.34 13.70 55.43 0.76 -26.58 16 13 Si 1.04 25.29 26.46 -169.99 -4.50 20.79 16 14 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 15 H -0.27 -6.19 5.76 56.52 0.33 -5.86 16 16 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 17 N -0.50 -10.60 4.34 -157.24 -0.68 -11.29 16 18 C 0.15 3.13 2.18 -83.79 -0.18 2.95 16 19 C -0.14 -2.84 8.73 -39.38 -0.34 -3.19 16 20 C -0.11 -1.99 10.04 -39.61 -0.40 -2.39 16 21 C -0.14 -2.32 10.04 -39.54 -0.40 -2.71 16 22 C -0.12 -2.00 10.04 -39.61 -0.40 -2.39 16 23 C -0.11 -2.02 9.54 -39.38 -0.38 -2.40 16 24 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 25 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.06 0.86 7.10 -51.93 -0.37 0.49 16 27 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 28 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.33 5.15 8.90 -39.29 -0.35 4.80 16 30 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.08 1.76 5.14 -51.93 -0.27 1.49 16 32 H 0.27 8.23 8.72 -40.82 -0.36 7.87 16 33 H 0.11 2.33 7.00 -52.49 -0.37 1.96 16 34 H 0.11 1.68 8.06 -52.49 -0.42 1.26 16 35 H 0.11 1.48 8.06 -52.49 -0.42 1.05 16 36 H 0.11 1.56 8.06 -52.48 -0.42 1.14 16 37 H 0.12 2.16 8.06 -52.49 -0.42 1.74 16 LS Contribution 290.32 15.07 4.38 4.38 Total: -1.00 -30.31 290.32 -8.74 -39.05 By element: Atomic # 1 Polarization: 11.98 SS G_CDS: -5.48 Total: 6.50 kcal Atomic # 6 Polarization: -16.76 SS G_CDS: -2.43 Total: -19.19 kcal Atomic # 7 Polarization: -50.82 SS G_CDS: -0.71 Total: -51.52 kcal Atomic # 14 Polarization: 25.29 SS G_CDS: -4.50 Total: 20.79 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -30.31 -8.74 -39.05 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000221059985.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.140 kcal (2) G-P(sol) polarization free energy of solvation -30.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.050 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds