Wall clock time and date at job start Mon Mar 30 2020 04:05:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.49139 * 2 1 4 4 C 1.53047 * 109.50746 * 120.05197 * 2 1 3 5 5 N 1.46961 * 109.36586 * 178.37854 * 4 2 1 6 6 C 1.46960 * 110.89651 * 300.69516 * 5 4 2 7 7 C 1.53052 * 109.36797 * 59.28768 * 6 5 4 8 8 H 1.09000 * 109.48729 * 61.60699 * 7 6 5 9 9 C 1.50696 * 109.49018 * 181.65338 * 7 6 5 10 10 H 1.07996 * 119.99873 * 114.10796 * 9 7 6 11 11 C 1.37874 * 119.99967 * 294.10793 * 9 7 6 12 12 N 1.31521 * 120.00190 * 159.51816 * 11 9 7 13 13 Si 1.86798 * 120.00176 * 339.51811 * 11 9 7 14 14 H 1.48503 * 109.47535 * 180.02562 * 13 11 9 15 15 H 1.48503 * 109.47285 * 59.99905 * 13 11 9 16 16 H 1.48505 * 109.47083 * 299.99881 * 13 11 9 17 17 N 1.46958 * 109.48811 * 239.95671 * 2 1 3 18 18 C 1.39669 * 111.00035 * 56.82607 * 17 2 1 19 19 C 1.38913 * 120.08126 * 71.79217 * 18 17 2 20 20 C 1.38104 * 119.92849 * 179.76991 * 19 18 17 21 21 C 1.38293 * 120.07051 * 0.51012 * 20 19 18 22 22 C 1.38285 * 120.15094 * 359.74269 * 21 20 19 23 23 C 1.38100 * 120.07357 * 359.97438 * 22 21 20 24 24 H 1.08996 * 109.46971 * 176.32570 * 1 2 3 25 25 H 1.09005 * 109.47167 * 296.32933 * 1 2 3 26 26 H 1.09001 * 109.46918 * 56.32925 * 1 2 3 27 27 H 1.08995 * 109.49232 * 298.34955 * 4 2 1 28 28 H 1.09002 * 109.48528 * 58.41845 * 4 2 1 29 29 H 1.00896 * 111.00089 * 176.81344 * 5 4 2 30 30 H 1.09001 * 109.46890 * 299.32541 * 6 5 4 31 31 H 1.09005 * 109.50728 * 179.26655 * 6 5 4 32 32 H 0.96994 * 119.99702 * 0.17865 * 12 11 9 33 33 H 1.08001 * 120.03527 * 0.02562 * 19 18 17 34 34 H 1.07999 * 119.96083 * 180.25315 * 20 19 18 35 35 H 1.08000 * 119.91753 * 179.72098 * 21 20 19 36 36 H 1.08003 * 119.95733 * 180.02562 * 22 21 20 37 37 H 1.08000 * 120.03417 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0276 0.0000 4 6 2.0411 -0.7224 1.2487 5 7 3.5101 -0.7547 1.2261 6 6 4.0008 -1.4480 0.0268 7 6 3.4894 -0.7258 -1.2220 8 1 3.8753 0.2935 -1.2362 9 6 3.9573 -1.4578 -2.4532 10 1 3.2394 -1.9399 -3.1003 11 6 5.3018 -1.5121 -2.7537 12 7 5.7588 -2.4478 -3.5571 13 14 6.4743 -0.2567 -2.0199 14 1 7.8541 -0.5306 -2.4958 15 1 6.4339 -0.3485 -0.5382 16 1 6.0670 1.1074 -2.4427 17 7 2.0203 -0.6936 -1.1993 18 6 1.5146 -0.1042 -2.3602 19 6 1.9772 1.1408 -2.7673 20 6 1.4785 1.7185 -3.9183 21 6 0.5120 1.0636 -4.6596 22 6 0.0456 -0.1735 -4.2545 23 6 0.5442 -0.7595 -3.1076 24 1 -0.3633 -1.0255 -0.0659 25 1 -0.3634 0.4558 0.9211 26 1 -0.3633 0.5698 -0.8553 27 1 1.7026 -0.1930 2.1393 28 1 1.6552 -1.7418 1.2625 29 1 3.8754 -1.1804 2.0647 30 1 3.6375 -2.4756 0.0270 31 1 5.0909 -1.4473 0.0264 32 1 5.1496 -3.0981 -3.9402 33 1 2.7289 1.6545 -2.1865 34 1 1.8407 2.6846 -4.2374 35 1 0.1205 1.5197 -5.5569 36 1 -0.7090 -0.6823 -4.8360 37 1 0.1797 -1.7259 -2.7920 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000221059985.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:05:26 Heat of formation + Delta-G solvation = 20.306052 kcal Electronic energy + Delta-G solvation = -18697.893202 eV Core-core repulsion = 16053.093870 eV Total energy + Delta-G solvation = -2644.799332 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.26600 -38.89885 -35.40038 -35.32773 -33.17407 -31.74056 -30.62417 -28.45002 -26.92445 -25.03636 -23.49049 -22.55039 -22.37115 -20.28758 -19.59965 -18.22896 -17.12576 -16.68500 -16.31168 -15.93419 -15.74561 -15.47775 -15.12677 -14.64057 -14.38106 -14.17364 -14.09012 -13.43468 -13.18864 -13.05001 -12.90001 -12.61296 -12.36028 -12.29346 -12.01596 -11.88693 -11.71569 -11.59182 -10.97546 -10.45538 -9.76238 -9.58069 -9.42246 -9.07925 -8.77845 -6.34412 0.54213 0.57624 1.41674 1.46574 1.66840 2.42661 2.93220 3.00302 3.03835 3.35807 3.92568 4.09915 4.16158 4.21799 4.26111 4.30024 4.43910 4.52523 4.61690 4.67076 4.74085 4.74737 4.80587 4.89009 5.01321 5.12731 5.18739 5.20268 5.32859 5.54804 5.65174 5.67032 5.77680 5.97447 6.03727 6.07941 6.33645 6.52175 6.66504 6.79485 7.40222 8.61258 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.017433 B = 0.011992 C = 0.008392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1605.780900 B = 2334.414462 C = 3335.895256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.078 3.922 3 H 0.032 0.968 4 C 0.070 3.930 5 N -0.698 5.698 6 C 0.065 3.935 7 C 0.211 3.789 8 H -0.009 1.009 9 C -0.583 4.583 10 H 0.022 0.978 11 C -0.010 4.010 12 N -0.930 5.930 13 Si 1.074 2.926 14 H -0.285 1.285 15 H -0.244 1.244 16 H -0.275 1.275 17 N -0.509 5.509 18 C 0.127 3.873 19 C -0.168 4.168 20 C -0.117 4.117 21 C -0.139 4.139 22 C -0.116 4.116 23 C -0.126 4.126 24 H 0.058 0.942 25 H 0.086 0.914 26 H 0.047 0.953 27 H 0.107 0.893 28 H 0.032 0.968 29 H 0.350 0.650 30 H 0.014 0.986 31 H 0.066 0.934 32 H 0.253 0.747 33 H 0.098 0.902 34 H 0.137 0.863 35 H 0.150 0.850 36 H 0.146 0.854 37 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.891 7.520 6.493 14.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.029 4.029 3 H 0.050 0.950 4 C -0.060 4.060 5 N -0.330 5.330 6 C -0.064 4.064 7 C 0.103 3.897 8 H 0.009 0.991 9 C -0.622 4.622 10 H 0.041 0.959 11 C -0.210 4.210 12 N -0.565 5.565 13 Si 0.896 3.104 14 H -0.211 1.211 15 H -0.169 1.169 16 H -0.201 1.201 17 N -0.231 5.231 18 C 0.033 3.967 19 C -0.188 4.188 20 C -0.136 4.136 21 C -0.156 4.156 22 C -0.135 4.135 23 C -0.145 4.145 24 H 0.077 0.923 25 H 0.105 0.895 26 H 0.067 0.933 27 H 0.125 0.875 28 H 0.050 0.950 29 H 0.169 0.831 30 H 0.033 0.967 31 H 0.084 0.916 32 H 0.062 0.938 33 H 0.116 0.884 34 H 0.155 0.845 35 H 0.168 0.832 36 H 0.164 0.836 37 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -9.411 8.089 6.332 13.931 hybrid contribution -1.102 -1.185 -0.362 1.659 sum -10.513 6.903 5.970 13.922 Atomic orbital electron populations 1.21727 0.92321 1.02312 1.02491 1.21853 0.96505 0.95073 0.89450 0.94994 1.22050 0.87304 0.99120 0.97478 1.60578 1.09122 1.58257 1.04996 1.22323 0.99050 0.94960 0.90099 1.19380 0.83423 0.93491 0.93362 0.99142 1.21909 0.93696 1.36895 1.09679 0.95948 1.26887 0.98990 0.98748 0.96330 1.70981 1.37540 1.14387 1.33595 0.83668 0.74391 0.74435 0.77880 1.21132 1.16880 1.20068 1.59876 1.10033 1.52523 1.00657 1.18739 0.94258 0.91000 0.92681 1.21636 1.00973 0.96799 0.99371 1.21255 0.97250 1.00714 0.94371 1.21374 0.97916 0.95672 1.00676 1.21334 1.00397 0.95936 0.95798 1.21104 0.98009 0.99543 0.95849 0.92286 0.89473 0.93349 0.87514 0.94980 0.83111 0.96728 0.91575 0.93815 0.88379 0.84540 0.83246 0.83591 0.86772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.60 8.78 71.98 0.63 -2.97 16 2 C 0.08 2.70 2.40 44.92 0.11 2.81 16 3 H 0.03 1.18 7.91 -2.39 -0.02 1.16 16 4 C 0.07 2.14 6.00 86.31 0.52 2.66 16 5 N -0.70 -24.24 6.90 -513.42 -3.54 -27.78 16 6 C 0.07 2.89 5.71 86.31 0.49 3.38 16 7 C 0.21 10.26 1.15 44.17 0.05 10.31 16 8 H -0.01 -0.45 5.47 -2.39 -0.01 -0.46 16 9 C -0.58 -33.69 8.16 25.60 0.21 -33.48 16 10 H 0.02 1.45 7.67 -2.91 -0.02 1.43 16 11 C -0.01 -0.57 5.31 84.65 0.45 -0.13 16 12 N -0.93 -58.64 13.70 21.45 0.29 -58.35 16 13 Si 1.07 51.37 26.46 68.60 1.81 53.19 16 14 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 15 H -0.24 -10.53 5.76 99.48 0.57 -9.95 16 16 H -0.27 -12.64 7.11 99.48 0.71 -11.93 16 17 N -0.51 -21.85 4.34 -651.40 -2.82 -24.68 16 18 C 0.13 5.31 2.18 38.22 0.08 5.39 16 19 C -0.17 -6.76 8.73 22.40 0.20 -6.57 16 20 C -0.12 -3.94 10.04 22.25 0.22 -3.72 16 21 C -0.14 -4.13 10.04 22.29 0.22 -3.90 16 22 C -0.12 -3.66 10.04 22.25 0.22 -3.43 16 23 C -0.13 -4.78 9.54 22.40 0.21 -4.57 16 24 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 25 H 0.09 1.83 8.14 -2.38 -0.02 1.81 16 26 H 0.05 1.40 7.10 -2.39 -0.02 1.39 16 27 H 0.11 2.49 8.14 -2.39 -0.02 2.47 16 28 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 29 H 0.35 9.98 8.90 -89.70 -0.80 9.18 16 30 H 0.01 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.07 3.01 5.14 -2.38 -0.01 3.00 16 32 H 0.25 16.28 8.72 -92.71 -0.81 15.47 16 33 H 0.10 4.13 7.00 -2.91 -0.02 4.11 16 34 H 0.14 3.79 8.06 -2.91 -0.02 3.77 16 35 H 0.15 3.31 8.06 -2.91 -0.02 3.28 16 36 H 0.15 3.57 8.06 -2.91 -0.02 3.55 16 37 H 0.11 4.27 8.06 -2.91 -0.02 4.25 16 Total: -1.00 -68.39 290.32 -0.55 -68.94 By element: Atomic # 1 Polarization: 22.81 SS G_CDS: 0.09 Total: 22.89 kcal Atomic # 6 Polarization: -37.84 SS G_CDS: 3.62 Total: -34.21 kcal Atomic # 7 Polarization: -104.73 SS G_CDS: -6.07 Total: -110.81 kcal Atomic # 14 Polarization: 51.37 SS G_CDS: 1.81 Total: 53.19 kcal Total: -68.39 -0.55 -68.94 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000221059985.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.248 kcal (2) G-P(sol) polarization free energy of solvation -68.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.942 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds