Wall clock time and date at job start Mon Mar 30 2020 04:05:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09005 * 109.48355 * 2 1 4 4 C 1.53049 * 109.48925 * 239.96088 * 2 1 3 5 5 N 1.46956 * 109.37889 * 298.39724 * 4 2 1 6 6 C 1.39680 * 110.99827 * 176.82384 * 5 4 2 7 7 C 1.38916 * 120.07550 * 235.77051 * 6 5 4 8 8 C 1.38107 * 119.92281 * 179.76892 * 7 6 5 9 9 C 1.38277 * 120.07370 * 0.50816 * 8 7 6 10 10 C 1.38285 * 120.15331 * 359.74981 * 9 8 7 11 11 C 1.38106 * 120.07353 * 359.97438 * 10 9 8 12 12 C 1.46957 * 110.88202 * 300.71439 * 5 4 2 13 13 H 1.08997 * 109.47347 * 299.31758 * 12 5 4 14 14 C 1.50697 * 109.50519 * 179.27656 * 12 5 4 15 15 H 1.08004 * 120.00251 * 0.07401 * 14 12 5 16 16 C 1.37879 * 120.00001 * 180.02562 * 14 12 5 17 17 N 1.31515 * 119.99984 * 180.02562 * 16 14 12 18 18 Si 1.86800 * 120.00050 * 359.97438 * 16 14 12 19 19 H 1.48506 * 109.47121 * 89.99873 * 18 16 14 20 20 H 1.48492 * 109.47155 * 210.00088 * 18 16 14 21 21 H 1.48498 * 109.47026 * 330.00512 * 18 16 14 22 22 C 1.53046 * 109.38065 * 59.28891 * 12 5 4 23 23 N 1.46955 * 109.36741 * 301.60834 * 22 12 5 24 24 H 1.09002 * 109.47000 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47226 * 300.04612 * 1 2 3 26 26 H 1.09002 * 109.47220 * 60.04544 * 1 2 3 27 27 H 1.09002 * 109.49200 * 58.37875 * 4 2 1 28 28 H 1.09002 * 109.48985 * 178.42294 * 4 2 1 29 29 H 1.08004 * 120.03547 * 0.02562 * 7 6 5 30 30 H 1.07995 * 119.96039 * 180.25174 * 8 7 6 31 31 H 1.08001 * 119.92819 * 179.76301 * 9 8 7 32 32 H 1.08002 * 119.96439 * 179.97438 * 10 9 8 33 33 H 1.08003 * 120.03789 * 179.97438 * 11 10 9 34 34 H 0.97002 * 119.99865 * 180.02562 * 17 16 14 35 35 H 1.09002 * 109.48847 * 181.64070 * 22 12 5 36 36 H 1.09003 * 109.49229 * 61.57671 * 22 12 5 37 37 H 1.00904 * 110.99800 * 295.45850 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8936 1.0276 0.0000 4 6 2.0407 -0.7223 -1.2490 5 7 1.5818 -2.1182 -1.2269 6 6 1.9691 -2.7908 -2.3882 7 6 1.0155 -3.4171 -3.1808 8 6 1.4014 -4.0772 -4.3309 9 6 2.7364 -4.1240 -4.6882 10 6 3.6889 -3.5062 -3.8987 11 6 3.3093 -2.8395 -2.7503 12 6 2.0721 -2.8118 -0.0277 13 1 3.1621 -2.8115 -0.0279 14 6 1.5698 -4.2326 -0.0275 15 1 0.9493 -4.5861 -0.8377 16 6 1.9032 -5.0815 1.0065 17 7 1.4652 -6.3216 1.0064 18 14 2.9781 -4.4707 2.4068 19 1 2.1203 -3.9042 3.4786 20 1 3.7700 -5.6021 2.9528 21 1 3.8985 -3.4202 1.9024 22 6 1.5615 -2.0895 1.2212 23 7 2.0207 -0.6937 1.1990 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5145 0.8896 26 1 -0.3634 0.5131 -0.8904 27 1 1.6541 -0.2264 -2.1394 28 1 3.1303 -0.6978 -1.2633 29 1 -0.0269 -3.3844 -2.9000 30 1 0.6601 -4.5609 -4.9496 31 1 3.0360 -4.6442 -5.5860 32 1 4.7308 -3.5450 -4.1804 33 1 4.0537 -2.3575 -2.1339 34 1 1.6995 -6.9187 1.7341 35 1 1.9480 -2.5853 2.1117 36 1 0.4718 -2.1136 1.2353 37 1 3.0267 -0.6431 1.2598 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000221060084.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:05:56 Heat of formation + Delta-G solvation = 50.873266 kcal Electronic energy + Delta-G solvation = -18667.589098 eV Core-core repulsion = 16024.115260 eV Total energy + Delta-G solvation = -2643.473838 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.83015 -37.77802 -34.11091 -33.01830 -31.02961 -30.37541 -28.88894 -27.66047 -24.95286 -23.97702 -22.07017 -21.70548 -20.53049 -18.60935 -17.07194 -16.85853 -15.90904 -14.89980 -14.62494 -14.37856 -14.18853 -13.97385 -13.74988 -13.08151 -12.83573 -12.73683 -12.38240 -12.11959 -11.72718 -11.43670 -11.30996 -11.12256 -10.73138 -10.69983 -10.57318 -10.49882 -10.06273 -9.64722 -9.46221 -8.69940 -8.36408 -8.00517 -7.87280 -7.58293 -6.13031 -4.11590 1.91227 1.98643 3.21111 3.27966 3.32084 4.30552 4.33359 4.47060 4.77867 5.16849 5.37837 5.41355 5.43460 5.46255 5.58819 5.62072 5.90560 5.94636 6.02076 6.09305 6.15995 6.22083 6.24567 6.31368 6.44789 6.51915 6.58215 6.78774 6.88728 7.01866 7.02947 7.21709 7.28085 7.44947 7.57676 7.76431 7.87148 8.20092 8.54030 8.95977 9.46961 10.99666 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.016777 B = 0.011900 C = 0.008229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1668.503035 B = 2352.358726 C = 3401.698169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.089 3.911 3 H 0.075 0.925 4 C 0.024 3.976 5 N -0.490 5.490 6 C 0.140 3.860 7 C -0.090 4.090 8 C -0.117 4.117 9 C -0.139 4.139 10 C -0.116 4.116 11 C -0.151 4.151 12 C 0.163 3.837 13 H -0.001 1.001 14 C -0.504 4.504 15 H 0.086 0.914 16 C 0.074 3.926 17 N -0.893 5.893 18 Si 0.879 3.121 19 H -0.274 1.274 20 H -0.295 1.295 21 H -0.271 1.271 22 C 0.051 3.949 23 N -0.691 5.691 24 H 0.076 0.924 25 H 0.050 0.950 26 H 0.049 0.951 27 H 0.070 0.930 28 H 0.026 0.974 29 H 0.124 0.876 30 H 0.116 0.884 31 H 0.112 0.888 32 H 0.111 0.889 33 H 0.108 0.892 34 H 0.265 0.735 35 H 0.063 0.937 36 H 0.086 0.914 37 H 0.329 0.671 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.889 9.588 -6.476 11.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.021 4.021 3 H 0.093 0.907 4 C -0.105 4.105 5 N -0.212 5.212 6 C 0.046 3.954 7 C -0.109 4.109 8 C -0.136 4.136 9 C -0.157 4.157 10 C -0.134 4.134 11 C -0.172 4.172 12 C 0.056 3.944 13 H 0.017 0.983 14 C -0.543 4.543 15 H 0.104 0.896 16 C -0.129 4.129 17 N -0.530 5.530 18 Si 0.709 3.291 19 H -0.200 1.200 20 H -0.222 1.222 21 H -0.197 1.197 22 C -0.077 4.077 23 N -0.319 5.319 24 H 0.094 0.906 25 H 0.069 0.931 26 H 0.068 0.932 27 H 0.089 0.911 28 H 0.044 0.956 29 H 0.142 0.858 30 H 0.134 0.866 31 H 0.130 0.870 32 H 0.129 0.871 33 H 0.126 0.874 34 H 0.075 0.925 35 H 0.081 0.919 36 H 0.105 0.895 37 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 0.837 9.661 -5.898 11.350 hybrid contribution 2.198 -0.373 0.187 2.237 sum 3.035 9.288 -5.711 11.318 Atomic orbital electron populations 1.21726 0.93911 1.03505 1.00238 1.21559 0.96845 0.96292 0.87449 0.90652 1.22886 0.97083 0.90579 0.99918 1.59735 1.59785 1.00302 1.01342 1.18632 0.91035 0.94846 0.90931 1.20990 0.99639 0.96765 0.93471 1.20982 0.95880 0.99601 0.97133 1.20942 0.93413 1.01225 1.00132 1.20847 0.98714 0.98547 0.95330 1.21524 0.96488 1.01557 0.97593 1.20408 0.93153 0.94955 0.85897 0.98313 1.20888 1.32396 0.91861 1.09145 0.89607 1.24887 0.95485 0.94777 0.97717 1.69865 1.45150 1.05309 1.32725 0.87003 0.81076 0.77735 0.83253 1.20027 1.22194 1.19674 1.22689 1.02087 0.85323 0.97617 1.60893 1.15497 1.16688 1.38859 0.90555 0.93064 0.93174 0.91128 0.95611 0.85848 0.86558 0.86964 0.87103 0.87400 0.92510 0.91933 0.89527 0.85447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.11 8.84 37.16 0.33 -1.78 16 2 C 0.09 1.41 3.69 -67.65 -0.25 1.16 16 3 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 4 C 0.02 0.41 4.68 -3.77 -0.02 0.40 16 5 N -0.49 -9.94 3.82 -164.74 -0.63 -10.57 16 6 C 0.14 2.81 3.70 -83.78 -0.31 2.50 16 7 C -0.09 -1.72 9.09 -39.38 -0.36 -2.08 16 8 C -0.12 -1.97 10.04 -39.62 -0.40 -2.36 16 9 C -0.14 -2.22 10.04 -39.55 -0.40 -2.61 16 10 C -0.12 -1.94 10.04 -39.61 -0.40 -2.34 16 11 C -0.15 -2.86 8.68 -39.38 -0.34 -3.20 16 12 C 0.16 3.77 1.34 -68.81 -0.09 3.67 16 13 H 0.00 -0.01 6.73 -51.93 -0.35 -0.36 16 14 C -0.50 -13.83 8.64 -34.44 -0.30 -14.13 16 15 H 0.09 2.58 6.82 -52.48 -0.36 2.23 16 16 C 0.07 2.09 5.45 -17.82 -0.10 1.99 16 17 N -0.89 -26.89 13.96 55.43 0.77 -26.11 16 18 Si 0.88 21.53 24.36 -169.99 -4.14 17.38 16 19 H -0.27 -6.54 6.88 56.52 0.39 -6.15 16 20 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 21 H -0.27 -6.39 6.53 56.52 0.37 -6.02 16 22 C 0.05 1.11 5.09 -3.77 -0.02 1.09 16 23 N -0.69 -12.47 6.70 -106.59 -0.71 -13.18 16 24 H 0.08 1.38 5.94 -51.93 -0.31 1.07 16 25 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.07 1.10 8.13 -51.93 -0.42 0.68 16 28 H 0.03 0.43 7.05 -51.93 -0.37 0.07 16 29 H 0.12 2.33 8.06 -52.48 -0.42 1.91 16 30 H 0.12 1.63 8.06 -52.49 -0.42 1.21 16 31 H 0.11 1.46 8.06 -52.49 -0.42 1.04 16 32 H 0.11 1.56 8.06 -52.49 -0.42 1.14 16 33 H 0.11 1.99 7.06 -52.48 -0.37 1.62 16 34 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 35 H 0.06 1.43 3.32 -51.93 -0.17 1.26 16 36 H 0.09 1.93 6.35 -51.93 -0.33 1.60 16 37 H 0.33 5.65 8.89 -39.29 -0.35 5.30 16 LS Contribution 283.93 15.07 4.28 4.28 Total: -1.00 -29.58 283.93 -8.25 -37.82 By element: Atomic # 1 Polarization: 13.23 SS G_CDS: -5.17 Total: 8.06 kcal Atomic # 6 Polarization: -15.04 SS G_CDS: -2.65 Total: -17.69 kcal Atomic # 7 Polarization: -49.29 SS G_CDS: -0.57 Total: -49.86 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -4.14 Total: 17.38 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -29.58 -8.25 -37.82 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000221060084.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.698 kcal (2) G-P(sol) polarization free energy of solvation -29.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.824 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds