Wall clock time and date at job start Mon Mar 30 2020 04:05:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09005 * 109.48355 * 2 1 4 4 C 1.53049 * 109.48925 * 239.96088 * 2 1 3 5 5 N 1.46956 * 109.37889 * 298.39724 * 4 2 1 6 6 C 1.39680 * 110.99827 * 176.82384 * 5 4 2 7 7 C 1.38916 * 120.07550 * 235.77051 * 6 5 4 8 8 C 1.38107 * 119.92281 * 179.76892 * 7 6 5 9 9 C 1.38277 * 120.07370 * 0.50816 * 8 7 6 10 10 C 1.38285 * 120.15331 * 359.74981 * 9 8 7 11 11 C 1.38106 * 120.07353 * 359.97438 * 10 9 8 12 12 C 1.46957 * 110.88202 * 300.71439 * 5 4 2 13 13 H 1.08997 * 109.47347 * 299.31758 * 12 5 4 14 14 C 1.50697 * 109.50519 * 179.27656 * 12 5 4 15 15 H 1.08004 * 120.00251 * 0.07401 * 14 12 5 16 16 C 1.37879 * 120.00001 * 180.02562 * 14 12 5 17 17 N 1.31515 * 119.99984 * 180.02562 * 16 14 12 18 18 Si 1.86800 * 120.00050 * 359.97438 * 16 14 12 19 19 H 1.48506 * 109.47121 * 89.99873 * 18 16 14 20 20 H 1.48492 * 109.47155 * 210.00088 * 18 16 14 21 21 H 1.48498 * 109.47026 * 330.00512 * 18 16 14 22 22 C 1.53046 * 109.38065 * 59.28891 * 12 5 4 23 23 N 1.46955 * 109.36741 * 301.60834 * 22 12 5 24 24 H 1.09002 * 109.47000 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47226 * 300.04612 * 1 2 3 26 26 H 1.09002 * 109.47220 * 60.04544 * 1 2 3 27 27 H 1.09002 * 109.49200 * 58.37875 * 4 2 1 28 28 H 1.09002 * 109.48985 * 178.42294 * 4 2 1 29 29 H 1.08004 * 120.03547 * 0.02562 * 7 6 5 30 30 H 1.07995 * 119.96039 * 180.25174 * 8 7 6 31 31 H 1.08001 * 119.92819 * 179.76301 * 9 8 7 32 32 H 1.08002 * 119.96439 * 179.97438 * 10 9 8 33 33 H 1.08003 * 120.03789 * 179.97438 * 11 10 9 34 34 H 0.97002 * 119.99865 * 180.02562 * 17 16 14 35 35 H 1.09002 * 109.48847 * 181.64070 * 22 12 5 36 36 H 1.09003 * 109.49229 * 61.57671 * 22 12 5 37 37 H 1.00904 * 110.99800 * 295.45850 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8936 1.0276 0.0000 4 6 2.0407 -0.7223 -1.2490 5 7 1.5818 -2.1182 -1.2269 6 6 1.9691 -2.7908 -2.3882 7 6 1.0155 -3.4171 -3.1808 8 6 1.4014 -4.0772 -4.3309 9 6 2.7364 -4.1240 -4.6882 10 6 3.6889 -3.5062 -3.8987 11 6 3.3093 -2.8395 -2.7503 12 6 2.0721 -2.8118 -0.0277 13 1 3.1621 -2.8115 -0.0279 14 6 1.5698 -4.2326 -0.0275 15 1 0.9493 -4.5861 -0.8377 16 6 1.9032 -5.0815 1.0065 17 7 1.4652 -6.3216 1.0064 18 14 2.9781 -4.4707 2.4068 19 1 2.1203 -3.9042 3.4786 20 1 3.7700 -5.6021 2.9528 21 1 3.8985 -3.4202 1.9024 22 6 1.5615 -2.0895 1.2212 23 7 2.0207 -0.6937 1.1990 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5145 0.8896 26 1 -0.3634 0.5131 -0.8904 27 1 1.6541 -0.2264 -2.1394 28 1 3.1303 -0.6978 -1.2633 29 1 -0.0269 -3.3844 -2.9000 30 1 0.6601 -4.5609 -4.9496 31 1 3.0360 -4.6442 -5.5860 32 1 4.7308 -3.5450 -4.1804 33 1 4.0537 -2.3575 -2.1339 34 1 1.6995 -6.9187 1.7341 35 1 1.9480 -2.5853 2.1117 36 1 0.4718 -2.1136 1.2353 37 1 3.0267 -0.6431 1.2598 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000221060084.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:05:56 Heat of formation + Delta-G solvation = 29.915742 kcal Electronic energy + Delta-G solvation = -18668.497884 eV Core-core repulsion = 16024.115260 eV Total energy + Delta-G solvation = -2644.382625 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.32681 -39.18145 -35.62510 -34.93808 -32.77934 -31.74808 -30.35672 -29.17043 -26.60440 -25.59472 -23.55619 -23.28146 -22.00841 -20.10048 -18.92278 -18.53121 -17.33430 -16.48424 -16.26031 -15.87598 -15.83154 -15.53220 -15.17139 -14.77889 -14.30861 -14.15061 -14.08257 -13.66662 -13.18977 -13.11653 -12.69359 -12.63722 -12.35419 -12.20901 -12.04996 -12.01955 -11.76842 -11.40535 -11.37356 -10.82494 -9.75368 -9.49131 -9.37917 -9.13055 -8.31147 -6.33024 0.52045 0.59363 1.26372 1.28775 1.37282 2.25724 2.88109 3.02820 3.03454 3.34032 4.03606 4.10310 4.11614 4.17923 4.29969 4.31831 4.34548 4.48192 4.60331 4.63271 4.71427 4.74073 4.83897 4.89992 4.96906 5.20017 5.21035 5.28467 5.42648 5.54067 5.56744 5.66578 5.74946 5.91929 6.01591 6.07322 6.45413 6.53235 6.64568 6.78163 7.29322 8.85200 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.016777 B = 0.011900 C = 0.008229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1668.503035 B = 2352.358726 C = 3401.698169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.088 3.912 3 H 0.112 0.888 4 C 0.026 3.974 5 N -0.498 5.498 6 C 0.111 3.889 7 C -0.115 4.115 8 C -0.119 4.119 9 C -0.136 4.136 10 C -0.117 4.117 11 C -0.169 4.169 12 C 0.174 3.826 13 H -0.014 1.014 14 C -0.501 4.501 15 H 0.045 0.955 16 C 0.018 3.982 17 N -0.942 5.942 18 Si 0.940 3.060 19 H -0.263 1.263 20 H -0.297 1.297 21 H -0.255 1.255 22 C 0.062 3.938 23 N -0.684 5.684 24 H 0.042 0.958 25 H 0.059 0.941 26 H 0.069 0.931 27 H 0.086 0.914 28 H 0.029 0.971 29 H 0.111 0.889 30 H 0.142 0.858 31 H 0.149 0.851 32 H 0.141 0.859 33 H 0.108 0.892 34 H 0.266 0.734 35 H 0.051 0.949 36 H 0.073 0.927 37 H 0.338 0.662 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.250 11.508 -7.135 13.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.022 4.022 3 H 0.130 0.870 4 C -0.103 4.103 5 N -0.220 5.220 6 C 0.018 3.982 7 C -0.134 4.134 8 C -0.138 4.138 9 C -0.153 4.153 10 C -0.136 4.136 11 C -0.189 4.189 12 C 0.066 3.934 13 H 0.003 0.997 14 C -0.540 4.540 15 H 0.064 0.936 16 C -0.180 4.180 17 N -0.582 5.582 18 Si 0.768 3.232 19 H -0.189 1.189 20 H -0.225 1.225 21 H -0.179 1.179 22 C -0.068 4.068 23 N -0.313 5.313 24 H 0.061 0.939 25 H 0.078 0.922 26 H 0.088 0.912 27 H 0.104 0.896 28 H 0.048 0.952 29 H 0.129 0.871 30 H 0.160 0.840 31 H 0.167 0.833 32 H 0.159 0.841 33 H 0.126 0.874 34 H 0.075 0.925 35 H 0.069 0.931 36 H 0.092 0.908 37 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 2.201 11.622 -6.576 13.533 hybrid contribution 1.718 -0.977 0.215 1.987 sum 3.919 10.645 -6.361 13.005 Atomic orbital electron populations 1.21675 0.93765 1.01758 1.01715 1.21765 0.96995 0.97517 0.85882 0.87000 1.22988 0.97379 0.88680 1.01233 1.59650 1.60123 1.01710 1.00470 1.18853 0.91981 0.96121 0.91277 1.21119 0.99194 0.98117 0.94995 1.21343 0.97312 0.98705 0.96425 1.21394 0.92693 1.00289 1.00966 1.21256 1.00545 0.97370 0.94406 1.21650 0.95893 1.02592 0.98762 1.20141 0.91951 0.93086 0.88267 0.99687 1.21092 1.31016 0.94338 1.07568 0.93641 1.25672 0.97020 0.94783 1.00485 1.70015 1.47380 1.06844 1.33992 0.85995 0.79584 0.77414 0.80223 1.18851 1.22512 1.17930 1.22357 1.01188 0.87280 0.95981 1.60879 1.16176 1.14088 1.40108 0.93855 0.92154 0.91160 0.89581 0.95250 0.87116 0.83983 0.83290 0.84130 0.87426 0.92526 0.93075 0.90845 0.84502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.83 8.84 71.98 0.64 -3.19 16 2 C 0.09 2.56 3.69 44.92 0.17 2.73 16 3 H 0.11 2.54 8.14 -2.38 -0.02 2.52 16 4 C 0.03 0.82 4.68 86.31 0.40 1.23 16 5 N -0.50 -20.25 3.82 -675.10 -2.58 -22.83 16 6 C 0.11 4.52 3.70 38.21 0.14 4.66 16 7 C -0.12 -4.51 9.09 22.40 0.20 -4.30 16 8 C -0.12 -3.88 10.04 22.25 0.22 -3.66 16 9 C -0.14 -3.99 10.04 22.29 0.22 -3.77 16 10 C -0.12 -3.68 10.04 22.25 0.22 -3.46 16 11 C -0.17 -6.26 8.68 22.40 0.19 -6.06 16 12 C 0.17 8.07 1.34 44.17 0.06 8.13 16 13 H -0.01 -0.69 6.73 -2.39 -0.02 -0.71 16 14 C -0.50 -28.45 8.64 25.60 0.22 -28.22 16 15 H 0.05 2.89 6.82 -2.91 -0.02 2.87 16 16 C 0.02 1.06 5.45 84.65 0.46 1.52 16 17 N -0.94 -58.76 13.96 21.45 0.30 -58.46 16 18 Si 0.94 44.86 24.36 68.60 1.67 46.53 16 19 H -0.26 -11.98 6.88 99.48 0.68 -11.29 16 20 H -0.30 -14.22 7.11 99.48 0.71 -13.51 16 21 H -0.25 -11.35 6.53 99.48 0.65 -10.70 16 22 C 0.06 2.61 5.09 86.31 0.44 3.05 16 23 N -0.68 -23.13 6.70 -491.13 -3.29 -26.42 16 24 H 0.04 1.55 5.94 -2.39 -0.01 1.54 16 25 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 26 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 27 H 0.09 2.50 8.13 -2.39 -0.02 2.48 16 28 H 0.03 0.93 7.05 -2.39 -0.02 0.91 16 29 H 0.11 4.44 8.06 -2.91 -0.02 4.42 16 30 H 0.14 3.75 8.06 -2.91 -0.02 3.72 16 31 H 0.15 3.27 8.06 -2.91 -0.02 3.24 16 32 H 0.14 3.50 8.06 -2.91 -0.02 3.48 16 33 H 0.11 3.88 7.06 -2.91 -0.02 3.86 16 34 H 0.27 15.57 8.31 -92.71 -0.77 14.80 16 35 H 0.05 2.28 3.32 -2.39 -0.01 2.27 16 36 H 0.07 3.31 6.35 -2.39 -0.02 3.29 16 37 H 0.34 10.63 8.89 -89.69 -0.80 9.83 16 Total: -1.00 -66.07 283.93 -0.11 -66.18 By element: Atomic # 1 Polarization: 26.16 SS G_CDS: 0.19 Total: 26.35 kcal Atomic # 6 Polarization: -34.95 SS G_CDS: 3.60 Total: -31.35 kcal Atomic # 7 Polarization: -102.14 SS G_CDS: -5.57 Total: -107.71 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 1.67 Total: 46.53 kcal Total: -66.07 -0.11 -66.18 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000221060084.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.094 kcal (2) G-P(sol) polarization free energy of solvation -66.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.178 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds